© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2126.t1 |
| Gene name | |
| Location | scaffold_02:1723293..1724395 |
| Strand | - |
| Gene length (bp) | 1102 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00010 | HLH | Helix-loop-helix DNA-binding domain | 8.8E-13 | 131 | 182 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0005488 | binding | No |
| GO:0005515 | protein binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Helix-loop-helix |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 51.31 | 29.35 | 73.26 |
| 5d_25C | Five days - 25 degrees Celsius | 42.02 | 23.17 | 60.86 |
| 7d_25C | Seven days - 25 degrees Celsius | 52.74 | 30.29 | 75.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 43.47 | 24.00 | 62.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 44.48 | 24.85 | 64.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 25.33 | 12.37 | 38.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.480768 | no |
| 3d_25C | 7d_25C | 0.939983 | no |
| 3d_25C | 7d_15C | 0.636126 | no |
| 3d_25C | 7d_30C | 0.003625 | yes |
| 3d_25C | 10d_25C | 0.576367 | no |
| 5d_25C | 7d_25C | 0.415079 | no |
| 5d_25C | 7d_15C | 0.875830 | no |
| 5d_25C | 7d_30C | 0.054049 | no |
| 5d_25C | 10d_25C | 0.930384 | no |
| 7d_25C | 7d_15C | 0.558501 | no |
| 7d_25C | 7d_30C | 0.001804 | yes |
| 7d_25C | 10d_25C | 0.498675 | no |
| 7d_15C | 7d_30C | 0.027737 | yes |
| 7d_15C | 10d_25C | 0.951929 | no |
| 7d_30C | 10d_25C | 0.038966 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2126.t1 MSGGFIIKDKPDGDAFTLPPAALSNASRRSSRSDPSYAPASPTSPELSGRRSSHTARSGTSIKRPLEDFDLPPPP TRTRKIIQMKPKSPSKTRTRENVKGSQSSEDAMPPTSNSKRKQPSATSAAGRKIARKTAHSLIERRRRSKMNEEF GTLKDMIPACTGQEMHKLAILQASIDYVNYLEKCIRDMKTGGFTHTPAAPPSPTSPEFIAETGEPPMRRDSSSAY SYSTSASPELRAAPTEFPDTSPSFSPRTQVPSANIPQDASSILPSPALGPIWASNEKMQEFQGVDHEASAALLML TQDRRGTADSISENFPGSTALALSAEETPAAPADIPRRKGMSVRDLLIS* |
| Coding | >Pro_DTO377G3_2|g2126.t1 ATGTCGGGCGGCTTCATCATCAAAGATAAGCCCGACGGGGATGCATTCACATTACCTCCTGCTGCATTGAGTAAC GCCAGTCGGAGATCTTCTCGCTCAGATCCTTCATATGCCCCGGCATCGCCAACCTCCCCAGAACTCTCTGGCCGT CGTTCAAGCCACACTGCACGGTCGGGTACATCGATCAAACGCCCGCTCGAGGATTTTGATTTGCCTCCGCCACCA ACCAGAACTCGCAAGATCATCCAGATGAAGCCAAAGTCACCTTCAAAAACCAGGACGAGGGAAAATGTCAAGGGT TCACAGAGTTCAGAAGACGCAATGCCCCCCACATCGAACTCTAAAAGGAAACAGCCCAGTGCGACTAGTGCTGCA GGCCGCAAGATCGCCCGCAAGACCGCACATAGTCTAATTGAGCGGCGACGACGGTCCAAGATGAACGAGGAGTTC GGGACGTTGAAAGACATGATCCCAGCATGCACCGGGCAGGAAATGCATAAGCTGGCCATTCTTCAGGCAAGCATT GACTATGTCAATTACCTAGAGAAATGTATCCGCGACATGAAGACTGGAGGATTCACACATACCCCGGCCGCACCC CCCTCTCCAACATCCCCTGAGTTCATCGCAGAAACAGGCGAGCCGCCTATGCGAAGGGATAGTTCTTCTGCTTAT TCATACTCCACCTCTGCATCACCGGAGTTGCGCGCTGCTCCCACAGAATTCCCCGATACATCCCCGTCCTTCTCT CCGCGCACCCAAGTCCCCTCAGCCAATATCCCGCAGGATGCGTCATCTATCCTTCCTAGCCCGGCACTGGGCCCG ATATGGGCGTCGAACGAGAAGATGCAGGAGTTTCAGGGGGTTGATCATGAGGCTTCGGCAGCTTTGCTCATGCTG ACTCAGGATCGGAGAGGGACTGCTGATTCGATCAGTGAGAATTTCCCTGGGAGTACGGCATTGGCGCTGTCTGCG GAGGAGACCCCAGCTGCGCCTGCTGATATTCCAAGGAGAAAGGGCATGAGTGTCCGCGATCTTCTTATTTCATAA |
| Transcript | >Pro_DTO377G3_2|g2126.t1 ATGTCGGGCGGCTTCATCATCAAAGATAAGCCCGACGGGGATGCATTCACATTACCTCCTGCTGCATTGAGTAAC GCCAGTCGGAGATCTTCTCGCTCAGATCCTTCATATGCCCCGGCATCGCCAACCTCCCCAGAACTCTCTGGCCGT CGTTCAAGCCACACTGCACGGTCGGGTACATCGATCAAACGCCCGCTCGAGGATTTTGATTTGCCTCCGCCACCA ACCAGAACTCGCAAGATCATCCAGATGAAGCCAAAGTCACCTTCAAAAACCAGGACGAGGGAAAATGTCAAGGGT TCACAGAGTTCAGAAGACGCAATGCCCCCCACATCGAACTCTAAAAGGAAACAGCCCAGTGCGACTAGTGCTGCA GGCCGCAAGATCGCCCGCAAGACCGCACATAGTCTAATTGAGCGGCGACGACGGTCCAAGATGAACGAGGAGTTC GGGACGTTGAAAGACATGATCCCAGCATGCACCGGGCAGGAAATGCATAAGCTGGCCATTCTTCAGGCAAGCATT GACTATGTCAATTACCTAGAGAAATGTATCCGCGACATGAAGACTGGAGGATTCACACATACCCCGGCCGCACCC CCCTCTCCAACATCCCCTGAGTTCATCGCAGAAACAGGCGAGCCGCCTATGCGAAGGGATAGTTCTTCTGCTTAT TCATACTCCACCTCTGCATCACCGGAGTTGCGCGCTGCTCCCACAGAATTCCCCGATACATCCCCGTCCTTCTCT CCGCGCACCCAAGTCCCCTCAGCCAATATCCCGCAGGATGCGTCATCTATCCTTCCTAGCCCGGCACTGGGCCCG ATATGGGCGTCGAACGAGAAGATGCAGGAGTTTCAGGGGGTTGATCATGAGGCTTCGGCAGCTTTGCTCATGCTG ACTCAGGATCGGAGAGGGACTGCTGATTCGATCAGTGAGAATTTCCCTGGGAGTACGGCATTGGCGCTGTCTGCG GAGGAGACCCCAGCTGCGCCTGCTGATATTCCAAGGAGAAAGGGCATGAGTGTCCGCGATCTTCTTATTTCATAA |
| Gene | >Pro_DTO377G3_2|g2126.t1 ATGTCGGGCGGCTTCATCATCAAAGATAAGCCCGACGGGGATGCATTCACATTACCTCCTGCTGCATTGAGTAAC GCCAGTCGGAGATCTTCTCGCTCAGATCCTTCATATGCCCCGGCATCGCCAACCTCCCCAGAACTCTCTGGCCGT CGTTCAAGCCACACTGCACGGTCGGGTACATCGATCAAACGCCCGCTCGAGGATTTTGATTTGCCTCCGCCACCA ACCAGAACTCGCAAGATCATCCAGATGAAGCCAAAGTCACCTTCAAAAACCAGGACGAGGGAAAATGTCAAGGGT TCACAGAGTTCAGAAGACGCAATGCCCCCCACATCGAACTCTAAAAGGAAACAGCCCAGTGCGACTAGTGCTGCA GGCCGCAAGATCGCCCGCAAGACCGCACATAGTCTAATTGAGCGGCGACGACGGTCCAAGATGAACGAGGAGTTC GGGACGTTGAAAGACATGATCCCAGCATGCACCGGGCAGGAAATGCATAAGCTGGCCATTCTTCAGGTACAGCCA CATTTCTTCCGAAATTTGACAACATGCTAACTCTCCCAACAAGGCAAGCATTGACTATGTCAATTACCTAGAGAA ATGTATCCGCGACATGAAGACTGGAGGATTCACACATACCCCGGCCGCACCCCCCTCTCCAACATCCCCTGAGTT CATCGCAGAAACAGGCGAGCCGCCTATGCGAAGGGATAGTTCTTCTGCTTATTCATACTCCACCTCTGCATCACC GGAGTTGCGCGCTGCTCCCACAGAATTCCCCGATACATCCCCGTCCTTCTCTCCGCGCACCCAAGTCCCCTCAGC CAATATCCCGCAGGATGCGTCATCTATCCTTCCTAGCCCGGCACTGGGCCCGATATGGGCGTCGAACGAGAAGAT GCAGGAGTTTCAGGGGGTTGATCATGAGGCTTCGGCAGCTTTGCTCATGCTGACTCAGGATCGGAGAGGGACTGC TGATTCGATCAGTGAGAATTTCCCTGGGAGTACGGCATTGGCGCTGTCTGCGGAGGAGACCCCAGCTGCGCCTGC TGATATTCCAAGGAGAAAGGGCATGAGTGTCCGCGATCTTCTTATTTCATAA |