© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2083.t1 |
| Gene name | |
| Location | scaffold_02:1618478..1619312 |
| Strand | + |
| Gene length (bp) | 834 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 780 |
| Protein length (aa) | 260 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13419 | HAD_2 | Haloacid dehalogenase-like hydrolase | 1.3E-07 | 156 | 231 |
| PF13242 | Hydrolase_like | HAD-hyrolase-like | 2.0E-05 | 176 | 241 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.68 | 8.63 | 32.72 |
| 5d_25C | Five days - 25 degrees Celsius | 17.36 | 6.91 | 27.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.50 | 6.44 | 26.56 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.26 | 6.85 | 27.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.96 | 7.11 | 28.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.72 | 4.50 | 20.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.684931 | no |
| 3d_25C | 7d_25C | 0.571494 | no |
| 3d_25C | 7d_15C | 0.753599 | no |
| 3d_25C | 7d_30C | 0.165132 | no |
| 3d_25C | 10d_25C | 0.671546 | no |
| 5d_25C | 7d_25C | 0.921874 | no |
| 5d_25C | 7d_15C | 0.951749 | no |
| 5d_25C | 7d_30C | 0.433647 | no |
| 5d_25C | 10d_25C | 0.991168 | no |
| 7d_25C | 7d_15C | 0.864588 | no |
| 7d_25C | 7d_30C | 0.523559 | no |
| 7d_25C | 10d_25C | 0.931464 | no |
| 7d_15C | 7d_30C | 0.375225 | no |
| 7d_15C | 10d_25C | 0.941536 | no |
| 7d_30C | 10d_25C | 0.448703 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2083.t1 MAEIKRPVGLLFDVGGVCVASPLQAILDYEIIRNIPSGWINFSISRTAPNGSWHKLERGDIGVDTDFFAGFNADL ASPELWAQFQQQLQKKQGTNGSTIPPMPTVDAEWLFWEMMRVSRTTDPYIYPALKKLRESGQFLMGALSNTIIFP DGHEYNEASEVKKQFDFFISSAHTGLRKPDPKIYQVALQEMDNLAKRRGLAGANPDDVVFFDDIGENLKGAKNAG MRTVKVILGKTQDAVKELEKLTGLQLLEEDKARL* |
| Coding | >Pro_DTO377G3_2|g2083.t1 ATGGCAGAGATCAAGCGACCGGTGGGCTTACTGTTCGACGTTGGAGGAGTGTGTGTTGCATCCCCGCTACAAGCT ATTCTTGACTATGAGATTATCCGAAACATCCCATCAGGATGGATCAATTTCAGTATCTCGCGAACCGCGCCCAAC GGTAGCTGGCACAAGCTCGAGCGAGGCGACATCGGGGTGGACACGGACTTCTTTGCGGGGTTCAATGCGGACCTG GCAAGCCCGGAACTATGGGCGCAATTCCAACAGCAACTTCAAAAGAAACAAGGCACAAATGGTTCTACCATTCCT CCAATGCCGACGGTGGATGCAGAATGGCTATTCTGGGAGATGATGCGGGTATCTCGCACGACAGACCCCTATATT TACCCAGCTCTGAAGAAATTGAGAGAGTCAGGACAGTTCCTGATGGGCGCTCTATCCAACACCATTATATTCCCC GACGGACATGAATACAATGAAGCATCCGAAGTGAAGAAGCAATTCGATTTCTTCATCTCGTCTGCGCACACGGGC CTCCGCAAACCTGACCCCAAAATTTACCAGGTGGCGTTGCAGGAGATGGACAATTTAGCTAAGAGACGAGGACTA GCCGGAGCTAATCCCGACGATGTTGTGTTCTTCGATGACATTGGCGAGAACCTGAAGGGGGCGAAGAACGCTGGC ATGCGTACAGTCAAAGTCATACTTGGAAAGACCCAAGATGCGGTCAAGGAGCTGGAGAAGCTCACAGGCCTTCAG TTGCTGGAGGAGGACAAGGCACGATTGTGA |
| Transcript | >Pro_DTO377G3_2|g2083.t1 ATGGCAGAGATCAAGCGACCGGTGGGCTTACTGTTCGACGTTGGAGGAGTGTGTGTTGCATCCCCGCTACAAGCT ATTCTTGACTATGAGATTATCCGAAACATCCCATCAGGATGGATCAATTTCAGTATCTCGCGAACCGCGCCCAAC GGTAGCTGGCACAAGCTCGAGCGAGGCGACATCGGGGTGGACACGGACTTCTTTGCGGGGTTCAATGCGGACCTG GCAAGCCCGGAACTATGGGCGCAATTCCAACAGCAACTTCAAAAGAAACAAGGCACAAATGGTTCTACCATTCCT CCAATGCCGACGGTGGATGCAGAATGGCTATTCTGGGAGATGATGCGGGTATCTCGCACGACAGACCCCTATATT TACCCAGCTCTGAAGAAATTGAGAGAGTCAGGACAGTTCCTGATGGGCGCTCTATCCAACACCATTATATTCCCC GACGGACATGAATACAATGAAGCATCCGAAGTGAAGAAGCAATTCGATTTCTTCATCTCGTCTGCGCACACGGGC CTCCGCAAACCTGACCCCAAAATTTACCAGGTGGCGTTGCAGGAGATGGACAATTTAGCTAAGAGACGAGGACTA GCCGGAGCTAATCCCGACGATGTTGTGTTCTTCGATGACATTGGCGAGAACCTGAAGGGGGCGAAGAACGCTGGC ATGCGTACAGTCAAAGTCATACTTGGAAAGACCCAAGATGCGGTCAAGGAGCTGGAGAAGCTCACAGGCCTTCAG TTGCTGGAGGAGGACAAGGCACGATTGTGA |
| Gene | >Pro_DTO377G3_2|g2083.t1 ATGGCAGAGATCAAGCGACCGGTGGGCTTACTGTTCGACGTTGGAGGAGTGTGTGTAAGTCGGCCACTTGACCCA TAAATTAAAGATACATATCTGACGAATCTCTAGGTTGCATCCCCGCTACAAGCTATTCTTGACTATGAGATTATC CGAAACATCCCATCAGGATGGATCAATTTCAGTATCTCGCGAACCGCGCCCAACGGTAGCTGGCACAAGCTCGAG CGAGGCGACATCGGGGTGGACACGGACTTCTTTGCGGGGTTCAATGCGGACCTGGCAAGCCCGGAACTATGGGCG CAATTCCAACAGCAACTTCAAAAGAAACAAGGCACAAATGGTTCTACCATTCCTCCAATGCCGACGGTGGATGCA GAATGGCTATTCTGGGAGATGATGCGGGTATCTCGCACGACAGACCCCTATATTTACCCAGCTCTGAAGAAATTG AGAGAGTCAGGACAGTTCCTGATGGGCGCTCTATCCAACACCATTATATTCCCCGACGGACATGAATACAATGAA GCATCCGAAGTGAAGAAGCAATTCGATTTCTTCATCTCGTCTGCGCACACGGGCCTCCGCAAACCTGACCCCAAA ATTTACCAGGTGGCGTTGCAGGAGATGGACAATTTAGCTAAGAGACGAGGACTAGCCGGAGCTAATCCCGACGAT GTTGTGTTCTTCGATGACATTGGCGAGAACCTGAAGGGGGCGAAGAACGCTGGCATGCGTACAGTCAAAGTCATA CTTGGAAAGACCCAAGATGCGGTCAAGGAGCTGGAGAAGCTCACAGGCCTTCAGTTGCTGGAGGAGGACAAGGCA CGATTGTGA |