Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g207.t1
Gene name
Locationscaffold_01:540726..542440
Strand-
Gene length (bp)1714
Transcript length (bp)1662
Coding sequence length (bp)1662
Protein length (aa) 554

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16573 CLP1_N N-terminal beta-sandwich domain of polyadenylation factor 6.4E-33 27 136
PF16575 CLP1_P mRNA cleavage and polyadenylation factor CLP1 P-loop 8.3E-29 150 363
PF06807 Clp1 Pre-mRNA cleavage complex II protein Clp1 2.5E-23 378 545

GO

GO Term Description Terminal node
GO:0031124 mRNA 3'-end processing Yes
GO:0009987 cellular process No
GO:0006807 nitrogen compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0016071 mRNA metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0044238 primary metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0043170 macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0044237 cellular metabolic process No
GO:0006397 mRNA processing No
GO:0031123 RNA 3'-end processing No
GO:0006396 RNA processing No
GO:0006139 nucleobase-containing compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 63 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g207.t1
MSLPGLELTQPSEERSQAPAPPSQINLTPGSEWRFEVAFGHIIKVKLLNGTAELFGTELAESQTYTFTGTKAAIF
TWHGCALEVTAVETTSTTSDGVTPTVGHGAGGCQSEYTAEETPMVEYANVHFALETMREEAQSIGKDGPRVLLLG
SENTGKTSLAKILTAYATKIGRQPLVVNLDPTEGMLGVPGTLTATAFRTILDVEDGWGSSPMSGPSPVPVKLPLV
YSYPMQSPLDGEGAVYRPVVSRLALSVTGRMAEDEDARETGIIVDTPGILGTDKPGTMELINHIVTEFSITTILV
LGSERLYSTVARQYDNKPTSSATAAVFDEHISVVKLSKSGGCVDRDDAFRKATRESQIRSYFFGNPIPSSSPSSA
ITLSPHAQQLDFASLPVYNYIVSSADDEDEDEYDPSQLGTGDSFLPGGGGMDDYASQETKQDPDRAAPLPGVVGS
FSEHADNVNANANANSSSSVPLKKVLPPAPSALANTLLAITHAPTTASPAEVRDASIMGFLYVADVDVDKGKIRV
LAPVGGRMPPRAIIWAKRWPGELVGLVG*
Coding >Pro_DTO377G3_2|g207.t1
ATGTCACTTCCAGGCCTCGAGCTAACCCAGCCATCGGAGGAAAGATCGCAGGCACCCGCGCCACCATCGCAAATC
AACCTGACCCCAGGTTCGGAATGGCGGTTCGAGGTTGCCTTTGGACATATCATCAAAGTAAAGCTTCTCAACGGA
ACGGCTGAACTCTTCGGTACAGAGCTTGCCGAATCGCAAACCTACACATTCACCGGCACAAAGGCGGCAATTTTC
ACATGGCATGGCTGTGCACTTGAAGTCACCGCGGTCGAAACAACATCAACTACCTCCGATGGAGTCACACCGACA
GTGGGTCACGGCGCAGGAGGATGTCAAAGCGAATACACGGCCGAGGAAACGCCAATGGTAGAATATGCAAACGTC
CACTTTGCGCTAGAGACAATGCGCGAAGAAGCCCAATCAATAGGCAAGGATGGCCCGCGCGTCCTACTTCTTGGC
TCTGAAAACACCGGAAAGACTAGTTTGGCTAAGATCTTGACTGCATATGCGACCAAGATCGGTCGTCAGCCGTTG
GTTGTGAACCTCGACCCTACGGAGGGTATGCTTGGCGTCCCTGGCACACTGACCGCGACTGCCTTCCGCACCATC
TTGGACGTAGAAGACGGCTGGGGAAGCAGTCCCATGTCTGGGCCCAGCCCCGTACCTGTCAAGCTGCCGCTTGTG
TATAGCTACCCGATGCAAAGCCCGCTAGATGGCGAAGGCGCCGTGTACCGACCAGTCGTCTCGCGTCTGGCATTG
TCTGTCACGGGCCGGATGGCCGAAGACGAGGATGCGCGCGAAACGGGAATCATCGTCGATACGCCCGGGATCCTT
GGCACAGACAAGCCTGGCACCATGGAGCTCATTAATCATATTGTCACAGAGTTCTCGATTACAACGATCCTAGTA
CTGGGTTCGGAGCGCCTATACAGCACCGTTGCTAGACAATATGATAACAAGCCCACCTCCAGCGCAACAGCCGCT
GTCTTCGACGAGCACATCTCCGTCGTCAAGCTTTCCAAATCCGGTGGCTGTGTCGACCGTGACGATGCCTTCCGC
AAGGCAACACGGGAGTCCCAAATCCGCTCCTACTTCTTCGGCAACCCTATCCCTTCCTCTTCACCCTCTTCCGCT
ATTACTCTCTCCCCCCACGCACAGCAACTTGACTTCGCCTCCCTCCCCGTATACAACTACATCGTCTCCTCGGCA
GACGATGAAGACGAAGACGAATACGACCCTTCCCAACTGGGAACAGGCGACTCCTTCCTCCCCGGCGGGGGTGGC
ATGGATGACTACGCCTCACAAGAAACAAAGCAAGACCCGGACCGGGCCGCCCCGCTCCCTGGTGTTGTGGGCTCA
TTTTCAGAGCACGCTGACAACGTGAATGCCAATGCCAATGCCAACAGCAGCAGCAGCGTCCCGCTGAAAAAGGTC
CTTCCACCCGCTCCCTCCGCTCTGGCAAATACCCTCCTTGCTATCACTCATGCGCCTACCACGGCATCCCCCGCT
GAAGTCCGCGACGCGAGTATCATGGGCTTCTTGTATGTTGCCGACGTTGACGTGGACAAGGGTAAAATCCGTGTG
CTTGCGCCTGTTGGTGGGAGAATGCCTCCACGCGCTATTATATGGGCAAAGCGTTGGCCTGGGGAGTTGGTGGGG
TTGGTGGGCTAG
Transcript >Pro_DTO377G3_2|g207.t1
ATGTCACTTCCAGGCCTCGAGCTAACCCAGCCATCGGAGGAAAGATCGCAGGCACCCGCGCCACCATCGCAAATC
AACCTGACCCCAGGTTCGGAATGGCGGTTCGAGGTTGCCTTTGGACATATCATCAAAGTAAAGCTTCTCAACGGA
ACGGCTGAACTCTTCGGTACAGAGCTTGCCGAATCGCAAACCTACACATTCACCGGCACAAAGGCGGCAATTTTC
ACATGGCATGGCTGTGCACTTGAAGTCACCGCGGTCGAAACAACATCAACTACCTCCGATGGAGTCACACCGACA
GTGGGTCACGGCGCAGGAGGATGTCAAAGCGAATACACGGCCGAGGAAACGCCAATGGTAGAATATGCAAACGTC
CACTTTGCGCTAGAGACAATGCGCGAAGAAGCCCAATCAATAGGCAAGGATGGCCCGCGCGTCCTACTTCTTGGC
TCTGAAAACACCGGAAAGACTAGTTTGGCTAAGATCTTGACTGCATATGCGACCAAGATCGGTCGTCAGCCGTTG
GTTGTGAACCTCGACCCTACGGAGGGTATGCTTGGCGTCCCTGGCACACTGACCGCGACTGCCTTCCGCACCATC
TTGGACGTAGAAGACGGCTGGGGAAGCAGTCCCATGTCTGGGCCCAGCCCCGTACCTGTCAAGCTGCCGCTTGTG
TATAGCTACCCGATGCAAAGCCCGCTAGATGGCGAAGGCGCCGTGTACCGACCAGTCGTCTCGCGTCTGGCATTG
TCTGTCACGGGCCGGATGGCCGAAGACGAGGATGCGCGCGAAACGGGAATCATCGTCGATACGCCCGGGATCCTT
GGCACAGACAAGCCTGGCACCATGGAGCTCATTAATCATATTGTCACAGAGTTCTCGATTACAACGATCCTAGTA
CTGGGTTCGGAGCGCCTATACAGCACCGTTGCTAGACAATATGATAACAAGCCCACCTCCAGCGCAACAGCCGCT
GTCTTCGACGAGCACATCTCCGTCGTCAAGCTTTCCAAATCCGGTGGCTGTGTCGACCGTGACGATGCCTTCCGC
AAGGCAACACGGGAGTCCCAAATCCGCTCCTACTTCTTCGGCAACCCTATCCCTTCCTCTTCACCCTCTTCCGCT
ATTACTCTCTCCCCCCACGCACAGCAACTTGACTTCGCCTCCCTCCCCGTATACAACTACATCGTCTCCTCGGCA
GACGATGAAGACGAAGACGAATACGACCCTTCCCAACTGGGAACAGGCGACTCCTTCCTCCCCGGCGGGGGTGGC
ATGGATGACTACGCCTCACAAGAAACAAAGCAAGACCCGGACCGGGCCGCCCCGCTCCCTGGTGTTGTGGGCTCA
TTTTCAGAGCACGCTGACAACGTGAATGCCAATGCCAATGCCAACAGCAGCAGCAGCGTCCCGCTGAAAAAGGTC
CTTCCACCCGCTCCCTCCGCTCTGGCAAATACCCTCCTTGCTATCACTCATGCGCCTACCACGGCATCCCCCGCT
GAAGTCCGCGACGCGAGTATCATGGGCTTCTTGTATGTTGCCGACGTTGACGTGGACAAGGGTAAAATCCGTGTG
CTTGCGCCTGTTGGTGGGAGAATGCCTCCACGCGCTATTATATGGGCAAAGCGTTGGCCTGGGGAGTTGGTGGGG
TTGGTGGGCTAG
Gene >Pro_DTO377G3_2|g207.t1
ATGTCACTTCCAGGCCTCGAGCTAACCCAGCCATCGGAGGAAAGATCGCAGGCACCCGCGCCACCATCGCAAATC
AACCTGACCCCAGGTTCGGAATGGCGGTTCGAGGTTGCCTTTGGACATATCATCAAAGTAAAGGTATGTTATCTC
ATCTAATCTGATTGTGATCCTTCTGACTCAAGCTGTGCAGCTTCTCAACGGAACGGCTGAACTCTTCGGTACAGA
GCTTGCCGAATCGCAAACCTACACATTCACCGGCACAAAGGCGGCAATTTTCACATGGCATGGCTGTGCACTTGA
AGTCACCGCGGTCGAAACAACATCAACTACCTCCGATGGAGTCACACCGACAGTGGGTCACGGCGCAGGAGGATG
TCAAAGCGAATACACGGCCGAGGAAACGCCAATGGTAGAATATGCAAACGTCCACTTTGCGCTAGAGACAATGCG
CGAAGAAGCCCAATCAATAGGCAAGGATGGCCCGCGCGTCCTACTTCTTGGCTCTGAAAACACCGGAAAGACTAG
TTTGGCTAAGATCTTGACTGCATATGCGACCAAGATCGGTCGTCAGCCGTTGGTTGTGAACCTCGACCCTACGGA
GGGTATGCTTGGCGTCCCTGGCACACTGACCGCGACTGCCTTCCGCACCATCTTGGACGTAGAAGACGGCTGGGG
AAGCAGTCCCATGTCTGGGCCCAGCCCCGTACCTGTCAAGCTGCCGCTTGTGTATAGCTACCCGATGCAAAGCCC
GCTAGATGGCGAAGGCGCCGTGTACCGACCAGTCGTCTCGCGTCTGGCATTGTCTGTCACGGGCCGGATGGCCGA
AGACGAGGATGCGCGCGAAACGGGAATCATCGTCGATACGCCCGGGATCCTTGGCACAGACAAGCCTGGCACCAT
GGAGCTCATTAATCATATTGTCACAGAGTTCTCGATTACAACGATCCTAGTACTGGGTTCGGAGCGCCTATACAG
CACCGTTGCTAGACAATATGATAACAAGCCCACCTCCAGCGCAACAGCCGCTGTCTTCGACGAGCACATCTCCGT
CGTCAAGCTTTCCAAATCCGGTGGCTGTGTCGACCGTGACGATGCCTTCCGCAAGGCAACACGGGAGTCCCAAAT
CCGCTCCTACTTCTTCGGCAACCCTATCCCTTCCTCTTCACCCTCTTCCGCTATTACTCTCTCCCCCCACGCACA
GCAACTTGACTTCGCCTCCCTCCCCGTATACAACTACATCGTCTCCTCGGCAGACGATGAAGACGAAGACGAATA
CGACCCTTCCCAACTGGGAACAGGCGACTCCTTCCTCCCCGGCGGGGGTGGCATGGATGACTACGCCTCACAAGA
AACAAAGCAAGACCCGGACCGGGCCGCCCCGCTCCCTGGTGTTGTGGGCTCATTTTCAGAGCACGCTGACAACGT
GAATGCCAATGCCAATGCCAACAGCAGCAGCAGCGTCCCGCTGAAAAAGGTCCTTCCACCCGCTCCCTCCGCTCT
GGCAAATACCCTCCTTGCTATCACTCATGCGCCTACCACGGCATCCCCCGCTGAAGTCCGCGACGCGAGTATCAT
GGGCTTCTTGTATGTTGCCGACGTTGACGTGGACAAGGGTAAAATCCGTGTGCTTGCGCCTGTTGGTGGGAGAAT
GCCTCCACGCGCTATTATATGGGCAAAGCGTTGGCCTGGGGAGTTGGTGGGGTTGGTGGGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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