© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g207.t1 |
| Gene name | |
| Location | scaffold_01:540726..542440 |
| Strand | - |
| Gene length (bp) | 1714 |
| Transcript length (bp) | 1662 |
| Coding sequence length (bp) | 1662 |
| Protein length (aa) | 554 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16573 | CLP1_N | N-terminal beta-sandwich domain of polyadenylation factor | 6.9E-33 | 27 | 136 |
| PF16575 | CLP1_P | mRNA cleavage and polyadenylation factor CLP1 P-loop | 2.8E-27 | 150 | 363 |
| PF06807 | Clp1 | Pre-mRNA cleavage complex II protein Clp1 | 5.8E-24 | 378 | 545 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031124 | mRNA 3'-end processing | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006396 | RNA processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0031123 | RNA 3'-end processing | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006397 | mRNA processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| Orthofinder run ID | 2 |
| Orthogroup | 8838 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g207.t1 MSLPGLELTQPSEERSQAPAPPSQINLTPGSEWRFEVAFGHIIKVKLLNGTAELFGTELAESQTYTFTGTKAAIF TWHGCALEVTAVETTSTTSDGVTPTVGHGAGGCQSEYTAEETPMVEYANVHFALETMREEAQSIGKDGPRVLLLG SENTGKTSLAKILTAYATKIGRQPLVVNLDPTEGMLGVPGTLTATAFRTILDVEDGWGSSPMSGPSPVPVKLPLV YSYPMQSPLDGEGAVYRPVVSRLALSVTGRMAEDEDARETGIIVDTPGILGTDKPGTMELINHIVTEFSITTILV LGSERLYSTVARQYDNKPTSSATAAVFDEHISVVKLSKSGGCVDRDDAFRKATRESQIRSYFFGNPIPSSSPSSA ITLSPHAQQLDFASLPVYNYIVSSADDEDEDEYDPSQLGTGDSFLPGGGGMDDYASQETKQDPDRAAPLPGVVGS FSEHADNVNANANANSSSSVPLKKVLPPAPSALANTLLAITHAPTTASPAEVRDASIMGFLYVADVDVDKGKIRV LAPVGGRMPPRAIIWAKRWPGELVGLVG* |
| Coding | >Pro_DTO377G3_2|g207.t1 ATGTCACTTCCAGGCCTCGAGCTAACCCAGCCATCGGAGGAAAGATCGCAGGCACCCGCGCCACCATCGCAAATC AACCTGACCCCAGGTTCGGAATGGCGGTTCGAGGTTGCCTTTGGACATATCATCAAAGTAAAGCTTCTCAACGGA ACGGCTGAACTCTTCGGTACAGAGCTTGCCGAATCGCAAACCTACACATTCACCGGCACAAAGGCGGCAATTTTC ACATGGCATGGCTGTGCACTTGAAGTCACCGCGGTCGAAACAACATCAACTACCTCCGATGGAGTCACACCGACA GTGGGTCACGGCGCAGGAGGATGTCAAAGCGAATACACGGCCGAGGAAACGCCAATGGTAGAATATGCAAACGTC CACTTTGCGCTAGAGACAATGCGCGAAGAAGCCCAATCAATAGGCAAGGATGGCCCGCGCGTCCTACTTCTTGGC TCTGAAAACACCGGAAAGACTAGTTTGGCTAAGATCTTGACTGCATATGCGACCAAGATCGGTCGTCAGCCGTTG GTTGTGAACCTCGACCCTACGGAGGGTATGCTTGGCGTCCCTGGCACACTGACCGCGACTGCCTTCCGCACCATC TTGGACGTAGAAGACGGCTGGGGAAGCAGTCCCATGTCTGGGCCCAGCCCCGTACCTGTCAAGCTGCCGCTTGTG TATAGCTACCCGATGCAAAGCCCGCTAGATGGCGAAGGCGCCGTGTACCGACCAGTCGTCTCGCGTCTGGCATTG TCTGTCACGGGCCGGATGGCCGAAGACGAGGATGCGCGCGAAACGGGAATCATCGTCGATACGCCCGGGATCCTT GGCACAGACAAGCCTGGCACCATGGAGCTCATTAATCATATTGTCACAGAGTTCTCGATTACAACGATCCTAGTA CTGGGTTCGGAGCGCCTATACAGCACCGTTGCTAGACAATATGATAACAAGCCCACCTCCAGCGCAACAGCCGCT GTCTTCGACGAGCACATCTCCGTCGTCAAGCTTTCCAAATCCGGTGGCTGTGTCGACCGTGACGATGCCTTCCGC AAGGCAACACGGGAGTCCCAAATCCGCTCCTACTTCTTCGGCAACCCTATCCCTTCCTCTTCACCCTCTTCCGCT ATTACTCTCTCCCCCCACGCACAGCAACTTGACTTCGCCTCCCTCCCCGTATACAACTACATCGTCTCCTCGGCA GACGATGAAGACGAAGACGAATACGACCCTTCCCAACTGGGAACAGGCGACTCCTTCCTCCCCGGCGGGGGTGGC ATGGATGACTACGCCTCACAAGAAACAAAGCAAGACCCGGACCGGGCCGCCCCGCTCCCTGGTGTTGTGGGCTCA TTTTCAGAGCACGCTGACAACGTGAATGCCAATGCCAATGCCAACAGCAGCAGCAGCGTCCCGCTGAAAAAGGTC CTTCCACCCGCTCCCTCCGCTCTGGCAAATACCCTCCTTGCTATCACTCATGCGCCTACCACGGCATCCCCCGCT GAAGTCCGCGACGCGAGTATCATGGGCTTCTTGTATGTTGCCGACGTTGACGTGGACAAGGGTAAAATCCGTGTG CTTGCGCCTGTTGGTGGGAGAATGCCTCCACGCGCTATTATATGGGCAAAGCGTTGGCCTGGGGAGTTGGTGGGG TTGGTGGGCTAG |
| Transcript | >Pro_DTO377G3_2|g207.t1 ATGTCACTTCCAGGCCTCGAGCTAACCCAGCCATCGGAGGAAAGATCGCAGGCACCCGCGCCACCATCGCAAATC AACCTGACCCCAGGTTCGGAATGGCGGTTCGAGGTTGCCTTTGGACATATCATCAAAGTAAAGCTTCTCAACGGA ACGGCTGAACTCTTCGGTACAGAGCTTGCCGAATCGCAAACCTACACATTCACCGGCACAAAGGCGGCAATTTTC ACATGGCATGGCTGTGCACTTGAAGTCACCGCGGTCGAAACAACATCAACTACCTCCGATGGAGTCACACCGACA GTGGGTCACGGCGCAGGAGGATGTCAAAGCGAATACACGGCCGAGGAAACGCCAATGGTAGAATATGCAAACGTC CACTTTGCGCTAGAGACAATGCGCGAAGAAGCCCAATCAATAGGCAAGGATGGCCCGCGCGTCCTACTTCTTGGC TCTGAAAACACCGGAAAGACTAGTTTGGCTAAGATCTTGACTGCATATGCGACCAAGATCGGTCGTCAGCCGTTG GTTGTGAACCTCGACCCTACGGAGGGTATGCTTGGCGTCCCTGGCACACTGACCGCGACTGCCTTCCGCACCATC TTGGACGTAGAAGACGGCTGGGGAAGCAGTCCCATGTCTGGGCCCAGCCCCGTACCTGTCAAGCTGCCGCTTGTG TATAGCTACCCGATGCAAAGCCCGCTAGATGGCGAAGGCGCCGTGTACCGACCAGTCGTCTCGCGTCTGGCATTG TCTGTCACGGGCCGGATGGCCGAAGACGAGGATGCGCGCGAAACGGGAATCATCGTCGATACGCCCGGGATCCTT GGCACAGACAAGCCTGGCACCATGGAGCTCATTAATCATATTGTCACAGAGTTCTCGATTACAACGATCCTAGTA CTGGGTTCGGAGCGCCTATACAGCACCGTTGCTAGACAATATGATAACAAGCCCACCTCCAGCGCAACAGCCGCT GTCTTCGACGAGCACATCTCCGTCGTCAAGCTTTCCAAATCCGGTGGCTGTGTCGACCGTGACGATGCCTTCCGC AAGGCAACACGGGAGTCCCAAATCCGCTCCTACTTCTTCGGCAACCCTATCCCTTCCTCTTCACCCTCTTCCGCT ATTACTCTCTCCCCCCACGCACAGCAACTTGACTTCGCCTCCCTCCCCGTATACAACTACATCGTCTCCTCGGCA GACGATGAAGACGAAGACGAATACGACCCTTCCCAACTGGGAACAGGCGACTCCTTCCTCCCCGGCGGGGGTGGC ATGGATGACTACGCCTCACAAGAAACAAAGCAAGACCCGGACCGGGCCGCCCCGCTCCCTGGTGTTGTGGGCTCA TTTTCAGAGCACGCTGACAACGTGAATGCCAATGCCAATGCCAACAGCAGCAGCAGCGTCCCGCTGAAAAAGGTC CTTCCACCCGCTCCCTCCGCTCTGGCAAATACCCTCCTTGCTATCACTCATGCGCCTACCACGGCATCCCCCGCT GAAGTCCGCGACGCGAGTATCATGGGCTTCTTGTATGTTGCCGACGTTGACGTGGACAAGGGTAAAATCCGTGTG CTTGCGCCTGTTGGTGGGAGAATGCCTCCACGCGCTATTATATGGGCAAAGCGTTGGCCTGGGGAGTTGGTGGGG TTGGTGGGCTAG |
| Gene | >Pro_DTO377G3_2|g207.t1 ATGTCACTTCCAGGCCTCGAGCTAACCCAGCCATCGGAGGAAAGATCGCAGGCACCCGCGCCACCATCGCAAATC AACCTGACCCCAGGTTCGGAATGGCGGTTCGAGGTTGCCTTTGGACATATCATCAAAGTAAAGGTATGTTATCTC ATCTAATCTGATTGTGATCCTTCTGACTCAAGCTGTGCAGCTTCTCAACGGAACGGCTGAACTCTTCGGTACAGA GCTTGCCGAATCGCAAACCTACACATTCACCGGCACAAAGGCGGCAATTTTCACATGGCATGGCTGTGCACTTGA AGTCACCGCGGTCGAAACAACATCAACTACCTCCGATGGAGTCACACCGACAGTGGGTCACGGCGCAGGAGGATG TCAAAGCGAATACACGGCCGAGGAAACGCCAATGGTAGAATATGCAAACGTCCACTTTGCGCTAGAGACAATGCG CGAAGAAGCCCAATCAATAGGCAAGGATGGCCCGCGCGTCCTACTTCTTGGCTCTGAAAACACCGGAAAGACTAG TTTGGCTAAGATCTTGACTGCATATGCGACCAAGATCGGTCGTCAGCCGTTGGTTGTGAACCTCGACCCTACGGA GGGTATGCTTGGCGTCCCTGGCACACTGACCGCGACTGCCTTCCGCACCATCTTGGACGTAGAAGACGGCTGGGG AAGCAGTCCCATGTCTGGGCCCAGCCCCGTACCTGTCAAGCTGCCGCTTGTGTATAGCTACCCGATGCAAAGCCC GCTAGATGGCGAAGGCGCCGTGTACCGACCAGTCGTCTCGCGTCTGGCATTGTCTGTCACGGGCCGGATGGCCGA AGACGAGGATGCGCGCGAAACGGGAATCATCGTCGATACGCCCGGGATCCTTGGCACAGACAAGCCTGGCACCAT GGAGCTCATTAATCATATTGTCACAGAGTTCTCGATTACAACGATCCTAGTACTGGGTTCGGAGCGCCTATACAG CACCGTTGCTAGACAATATGATAACAAGCCCACCTCCAGCGCAACAGCCGCTGTCTTCGACGAGCACATCTCCGT CGTCAAGCTTTCCAAATCCGGTGGCTGTGTCGACCGTGACGATGCCTTCCGCAAGGCAACACGGGAGTCCCAAAT CCGCTCCTACTTCTTCGGCAACCCTATCCCTTCCTCTTCACCCTCTTCCGCTATTACTCTCTCCCCCCACGCACA GCAACTTGACTTCGCCTCCCTCCCCGTATACAACTACATCGTCTCCTCGGCAGACGATGAAGACGAAGACGAATA CGACCCTTCCCAACTGGGAACAGGCGACTCCTTCCTCCCCGGCGGGGGTGGCATGGATGACTACGCCTCACAAGA AACAAAGCAAGACCCGGACCGGGCCGCCCCGCTCCCTGGTGTTGTGGGCTCATTTTCAGAGCACGCTGACAACGT GAATGCCAATGCCAATGCCAACAGCAGCAGCAGCGTCCCGCTGAAAAAGGTCCTTCCACCCGCTCCCTCCGCTCT GGCAAATACCCTCCTTGCTATCACTCATGCGCCTACCACGGCATCCCCCGCTGAAGTCCGCGACGCGAGTATCAT GGGCTTCTTGTATGTTGCCGACGTTGACGTGGACAAGGGTAAAATCCGTGTGCTTGCGCCTGTTGGTGGGAGAAT GCCTCCACGCGCTATTATATGGGCAAAGCGTTGGCCTGGGGAGTTGGTGGGGTTGGTGGGCTAG |