© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2069.t1 |
| Gene name | |
| Location | scaffold_02:1583683..1584618 |
| Strand | - |
| Gene length (bp) | 935 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10173 | Mit_KHE1 | Mitochondrial K+-H+ exchange-related | 1.4E-61 | 2 | 175 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 133 | 155 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 55.25 | 30.45 | 80.06 |
| 5d_25C | Five days - 25 degrees Celsius | 53.78 | 29.18 | 78.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 47.28 | 25.06 | 69.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 46.51 | 24.59 | 68.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 67.27 | 38.44 | 96.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 42.88 | 22.19 | 63.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.945497 | no |
| 3d_25C | 7d_25C | 0.625573 | no |
| 3d_25C | 7d_15C | 0.493093 | no |
| 3d_25C | 7d_30C | 0.387980 | no |
| 3d_25C | 10d_25C | 0.583605 | no |
| 5d_25C | 7d_25C | 0.705008 | no |
| 5d_25C | 7d_15C | 0.438647 | no |
| 5d_25C | 7d_30C | 0.468528 | no |
| 5d_25C | 10d_25C | 0.664488 | no |
| 7d_25C | 7d_15C | 0.175414 | no |
| 7d_25C | 7d_30C | 0.794886 | no |
| 7d_25C | 10d_25C | 0.970026 | no |
| 7d_15C | 7d_30C | 0.078320 | no |
| 7d_15C | 10d_25C | 0.148853 | no |
| 7d_30C | 10d_25C | 0.835836 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2069.t1 MRLFLIPISTKRVLVYARPLSKDLAKELSVLDRITTKAAEIWAKWEEADKGWKMHLVRWGNRVQQRIPYEEWALK SIPSFKTQQRVNGDHGKTKVDVLFPGNAVRLERVQDVLRTVATERQELHRKKMMWCLIAAPITAPLGLIPVVPNI PFFYLAYRGWSHWRALNGSKHLELLVGQNILNPISLPGLEQLYAKRVSGVLEGSATEPSYSEVADDIEQSEDRVL LKMSDAKKLATILEAPELVLEAERAIIQVGERLEAAEKTKQENKDEKKDS* |
| Coding | >Pro_DTO377G3_2|g2069.t1 ATGCGCCTGTTCCTAATTCCGATCTCCACAAAGCGAGTTCTCGTATATGCTCGGCCCCTTAGCAAGGACTTAGCG AAGGAGCTGTCGGTCCTTGATAGGATCACAACCAAGGCGGCTGAAATATGGGCCAAGTGGGAGGAAGCCGACAAA GGATGGAAGATGCACCTTGTTCGCTGGGGCAATCGAGTCCAGCAACGGATACCATACGAAGAATGGGCCCTCAAA AGCATTCCTTCATTCAAGACCCAACAGCGAGTGAATGGGGATCATGGGAAGACTAAGGTGGATGTGCTGTTCCCT GGTAACGCGGTGCGATTGGAGCGAGTTCAAGATGTACTGCGCACGGTCGCCACGGAGAGACAGGAGCTTCATCGG AAGAAGATGATGTGGTGCTTAATAGCTGCGCCGATTACCGCCCCACTTGGATTGATACCAGTGGTTCCGAATATT CCCTTTTTCTACTTGGCATATCGGGGCTGGTCCCACTGGCGCGCATTGAATGGTTCAAAACACCTGGAATTACTC GTCGGACAGAATATCCTCAACCCTATCTCATTACCGGGGCTAGAACAGCTATATGCCAAACGCGTATCTGGAGTA CTGGAAGGTTCCGCGACCGAGCCATCATATTCCGAGGTTGCCGACGACATAGAGCAGAGCGAGGATCGGGTCCTG TTGAAGATGTCTGATGCCAAGAAGTTGGCTACGATCCTGGAAGCGCCGGAGCTTGTTTTGGAAGCTGAACGAGCG ATTATTCAAGTCGGTGAGCGACTCGAGGCTGCAGAGAAGACTAAACAAGAGAACAAAGACGAGAAGAAGGATTCA TGA |
| Transcript | >Pro_DTO377G3_2|g2069.t1 ATGCGCCTGTTCCTAATTCCGATCTCCACAAAGCGAGTTCTCGTATATGCTCGGCCCCTTAGCAAGGACTTAGCG AAGGAGCTGTCGGTCCTTGATAGGATCACAACCAAGGCGGCTGAAATATGGGCCAAGTGGGAGGAAGCCGACAAA GGATGGAAGATGCACCTTGTTCGCTGGGGCAATCGAGTCCAGCAACGGATACCATACGAAGAATGGGCCCTCAAA AGCATTCCTTCATTCAAGACCCAACAGCGAGTGAATGGGGATCATGGGAAGACTAAGGTGGATGTGCTGTTCCCT GGTAACGCGGTGCGATTGGAGCGAGTTCAAGATGTACTGCGCACGGTCGCCACGGAGAGACAGGAGCTTCATCGG AAGAAGATGATGTGGTGCTTAATAGCTGCGCCGATTACCGCCCCACTTGGATTGATACCAGTGGTTCCGAATATT CCCTTTTTCTACTTGGCATATCGGGGCTGGTCCCACTGGCGCGCATTGAATGGTTCAAAACACCTGGAATTACTC GTCGGACAGAATATCCTCAACCCTATCTCATTACCGGGGCTAGAACAGCTATATGCCAAACGCGTATCTGGAGTA CTGGAAGGTTCCGCGACCGAGCCATCATATTCCGAGGTTGCCGACGACATAGAGCAGAGCGAGGATCGGGTCCTG TTGAAGATGTCTGATGCCAAGAAGTTGGCTACGATCCTGGAAGCGCCGGAGCTTGTTTTGGAAGCTGAACGAGCG ATTATTCAAGTCGGTGAGCGACTCGAGGCTGCAGAGAAGACTAAACAAGAGAACAAAGACGAGAAGAAGGATTCA TGA |
| Gene | >Pro_DTO377G3_2|g2069.t1 ATGCGCCTGTTCCTAATTCCGATCTCCACAAAGCGAGTTCTCGTATATGCTCGGCCCCTTAGCAAGGACTTAGCG AAGGAGCTGTCGGTCCTTGATAGGATCACAACCAAGGCGGCTGAAATATGGGCCAAGTGGGAGGAAGCCGACAAA GGATGGAAGATGCACCTTGTTCGCTGGGGCAATCGAGTCCAGCAACGGATACCATACGAAGAATGGGCCCTCAAA AGCATTCCTTCATTCAAGACCCAACAGCGAGTGAATGGGGATCATGGGAAGACTAAGGTGGATGTGCTGTTCCCT GGTAACGCGGTGCGATTGGAGCGAGTTCAAGATGTACTGCGCACGGTCGCCACGGAGAGACAGGAGCTTCATCGG AAGAAGATGATGTGGTGCTTAATAGCTGCGCCGATTACCGCCCCACTTGGATTGATACCAGTGTATGTGAAAGAC ATGAGCCTTCTCCGGTGATATGGTATACTAATAAAGAGCAGGGTTCCGAATATTCCCTTTTTCTACTTGGCATAT CGGGGCTGGTCCCACTGGCGCGGTTAGTTTTGATCGTCTACATTGCGATGGCTCATAAAACTGACGAGAATACAG CATTGAATGGTTCAAAACACCTGGAATTACTCGTCGGACAGAATATCCTCAACCCTATCTCATTACCGGGGCTAG AACAGCTATATGCCAAACGCGTATCTGGAGTACTGGAAGGTTCCGCGACCGAGCCATCATATTCCGAGGTTGCCG ACGACATAGAGCAGAGCGAGGATCGGGTCCTGTTGAAGATGTCTGATGCCAAGAAGTTGGCTACGATCCTGGAAG CGCCGGAGCTTGTTTTGGAAGCTGAACGAGCGATTATTCAAGTCGGTGAGCGACTCGAGGCTGCAGAGAAGACTA AACAAGAGAACAAAGACGAGAAGAAGGATTCATGA |