© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2063.t1 |
| Gene name | |
| Location | scaffold_02:1566467..1567932 |
| Strand | + |
| Gene length (bp) | 1465 |
| Transcript length (bp) | 1326 |
| Coding sequence length (bp) | 1326 |
| Protein length (aa) | 442 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 70 | 88 | 18 |
| 2 | 103 | 125 | 22 |
| 3 | 171 | 193 | 22 |
| 4 | 203 | 221 | 18 |
| 5 | 230 | 247 | 17 |
| 6 | 267 | 286 | 19 |
| 7 | 306 | 328 | 22 |
| 8 | 343 | 365 | 22 |
| 9 | 370 | 387 | 17 |
| 10 | 397 | 419 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 120.02 | 73.55 | 166.48 |
| 5d_25C | Five days - 25 degrees Celsius | 152.17 | 92.91 | 211.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 165.52 | 100.82 | 230.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 212.96 | 128.35 | 297.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 171.92 | 104.27 | 239.57 |
| 7d_30C | Seven days - 30 degrees Celsius | 157.06 | 94.70 | 219.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.301305 | no |
| 3d_25C | 7d_25C | 0.139282 | no |
| 3d_25C | 7d_15C | 0.090048 | no |
| 3d_25C | 7d_30C | 0.236071 | no |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.777043 | no |
| 5d_25C | 7d_15C | 0.657812 | no |
| 5d_25C | 7d_30C | 0.925139 | no |
| 5d_25C | 10d_25C | 0.123322 | no |
| 7d_25C | 7d_15C | 0.908394 | no |
| 7d_25C | 7d_30C | 0.872366 | no |
| 7d_25C | 10d_25C | 0.278993 | no |
| 7d_15C | 7d_30C | 0.758806 | no |
| 7d_15C | 10d_25C | 0.371928 | no |
| 7d_30C | 10d_25C | 0.180490 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2063.t1 MVVNRPPLHRPTDGRSQQPLLKDDRPRSRPRSSFGNYDTEGQPMLHESRRPTIRSKSPERDAALATRKKYMVASG FLVLSLISFVVQTETASYIQNELHWKKPYCMLYMTHGSWSLLWLVQLGILRIQKRKLTWDVFWRRHVFFLRTTAQ MVESQEVHLSTRASNQSPVRYMLKTTAFVTTALTVAGGSWYVAVNMTTPSDLTAIYNCSAFFAYAFSIPLLKEKL RIDKVFSVAVATIGVMVVAYGDGPHKKVPKGGTDGNGGQNRLVGNIVIGVGSILYGLYEVLYKRFACPPEGTSSG RGTIFANTFGSLIGAFTLLVLWIPLPFLHWTGWETFEWPTGEAAWMLLISVGANATFSGSFLVLISLTSPVLSSV AALLTIFLVALVDWFRTGNSLSLASIIGGVLITVAFFMLSISTYREMNEERKKHLENDEIESDSDA* |
| Coding | >Pro_DTO377G3_2|g2063.t1 ATGGTTGTCAATCGCCCCCCATTACACCGTCCAACCGACGGCCGCTCGCAACAGCCCCTCCTCAAAGATGACCGT CCTCGCTCCCGCCCGCGCTCGAGCTTCGGTAATTATGACACAGAAGGCCAGCCCATGCTGCATGAATCACGAAGG CCGACAATTCGGAGTAAAAGTCCGGAACGCGACGCTGCCCTGGCAACCCGCAAGAAATATATGGTTGCATCGGGG TTCCTGGTGCTGAGTCTGATTAGCTTCGTGGTCCAAACGGAGACCGCTTCATACATTCAAAATGAGTTGCATTGG AAGAAGCCGTATTGCATGCTCTATATGACCCACGGATCGTGGTCCTTGCTCTGGCTGGTCCAGCTGGGTATCCTT CGGATACAGAAACGGAAGCTCACGTGGGATGTTTTCTGGCGGCGCCATGTCTTTTTCCTTCGTACCACTGCGCAG ATGGTAGAATCGCAGGAAGTACATCTGAGTACTCGCGCGTCCAATCAATCGCCGGTCCGCTATATGCTGAAGACC ACCGCCTTTGTGACTACTGCTCTCACCGTCGCTGGAGGATCATGGTACGTGGCAGTCAACATGACCACTCCCAGC GACCTTACGGCGATCTATAACTGCTCGGCGTTCTTCGCATATGCCTTTTCGATTCCGCTATTGAAGGAGAAACTC CGAATTGACAAGGTCTTTTCCGTGGCCGTGGCTACCATCGGCGTCATGGTCGTTGCCTATGGGGATGGGCCTCAT AAGAAGGTCCCGAAAGGAGGCACAGATGGCAACGGGGGACAGAACCGATTGGTCGGAAACATTGTTATCGGCGTT GGAAGTATTCTCTATGGCCTTTACGAGGTTCTCTATAAACGCTTTGCCTGTCCTCCGGAAGGTACCAGCTCTGGC CGGGGTACGATCTTTGCCAATACTTTTGGCAGTCTAATAGGGGCTTTCACCCTGTTGGTACTATGGATCCCATTA CCATTTCTGCACTGGACAGGATGGGAGACATTTGAATGGCCGACTGGCGAAGCAGCATGGATGCTGCTCATTTCC GTGGGTGCCAATGCTACGTTCTCGGGCTCTTTCCTTGTGCTCATCTCCCTCACATCGCCCGTCCTATCCTCAGTC GCCGCGCTCCTTACTATTTTCCTCGTCGCTCTGGTGGACTGGTTCCGAACTGGGAACTCACTTTCTCTAGCCTCG ATTATTGGAGGCGTCTTGATTACGGTGGCATTTTTCATGCTGAGCATCAGCACGTATAGAGAGATGAATGAGGAG CGGAAGAAGCATCTAGAGAACGATGAGATCGAGTCTGACAGTGATGCATAG |
| Transcript | >Pro_DTO377G3_2|g2063.t1 ATGGTTGTCAATCGCCCCCCATTACACCGTCCAACCGACGGCCGCTCGCAACAGCCCCTCCTCAAAGATGACCGT CCTCGCTCCCGCCCGCGCTCGAGCTTCGGTAATTATGACACAGAAGGCCAGCCCATGCTGCATGAATCACGAAGG CCGACAATTCGGAGTAAAAGTCCGGAACGCGACGCTGCCCTGGCAACCCGCAAGAAATATATGGTTGCATCGGGG TTCCTGGTGCTGAGTCTGATTAGCTTCGTGGTCCAAACGGAGACCGCTTCATACATTCAAAATGAGTTGCATTGG AAGAAGCCGTATTGCATGCTCTATATGACCCACGGATCGTGGTCCTTGCTCTGGCTGGTCCAGCTGGGTATCCTT CGGATACAGAAACGGAAGCTCACGTGGGATGTTTTCTGGCGGCGCCATGTCTTTTTCCTTCGTACCACTGCGCAG ATGGTAGAATCGCAGGAAGTACATCTGAGTACTCGCGCGTCCAATCAATCGCCGGTCCGCTATATGCTGAAGACC ACCGCCTTTGTGACTACTGCTCTCACCGTCGCTGGAGGATCATGGTACGTGGCAGTCAACATGACCACTCCCAGC GACCTTACGGCGATCTATAACTGCTCGGCGTTCTTCGCATATGCCTTTTCGATTCCGCTATTGAAGGAGAAACTC CGAATTGACAAGGTCTTTTCCGTGGCCGTGGCTACCATCGGCGTCATGGTCGTTGCCTATGGGGATGGGCCTCAT AAGAAGGTCCCGAAAGGAGGCACAGATGGCAACGGGGGACAGAACCGATTGGTCGGAAACATTGTTATCGGCGTT GGAAGTATTCTCTATGGCCTTTACGAGGTTCTCTATAAACGCTTTGCCTGTCCTCCGGAAGGTACCAGCTCTGGC CGGGGTACGATCTTTGCCAATACTTTTGGCAGTCTAATAGGGGCTTTCACCCTGTTGGTACTATGGATCCCATTA CCATTTCTGCACTGGACAGGATGGGAGACATTTGAATGGCCGACTGGCGAAGCAGCATGGATGCTGCTCATTTCC GTGGGTGCCAATGCTACGTTCTCGGGCTCTTTCCTTGTGCTCATCTCCCTCACATCGCCCGTCCTATCCTCAGTC GCCGCGCTCCTTACTATTTTCCTCGTCGCTCTGGTGGACTGGTTCCGAACTGGGAACTCACTTTCTCTAGCCTCG ATTATTGGAGGCGTCTTGATTACGGTGGCATTTTTCATGCTGAGCATCAGCACGTATAGAGAGATGAATGAGGAG CGGAAGAAGCATCTAGAGAACGATGAGATCGAGTCTGACAGTGATGCATAG |
| Gene | >Pro_DTO377G3_2|g2063.t1 ATGGTTGTCAATCGCCCCCCATTACACCGTCCAACCGACGGCCGCTCGCAACAGCCCCTCCTCAAAGATGACCGT CCTCGCTCCCGCCCGCGCTCGAGCTTCGGTAATTATGACACAGAAGGCCAGCCCATGCTGCATGAATCACGAAGG CCGACAATTCGGAGTAAAAGTCCGGAACGCGACGCTGCCCTGGCAACCCGCAAGAAATATATGGTTGCATCGGGG TTCCTGGTGCTGAGTCTGATTAGCTTCGTGGTCCAAACGGAGACCGCTTCATACATTCAAAATGAGTTGCATTGG AAGAAGCCGTATTGCATGCTGTAAGTCCGAGCGCAAAGATAGCGACAAGCCCATGCGGAACCTCTTTCCCGGAAT GTAATCGCTTACCATTTCCTTTCCCTATGCAGCTATATGACCCACGGATCGTGGTCCTTGCTCTGGCTGGTCCAG CTGGGTATCCTTCGGATACAGAAACGGAAGCTCACGTGGGATGTTTTCTGGCGGCGCCATGTCTTTTTCCTTCGT ACCACTGCGCAGATGGTAGAATCGCAGGAAGTACATCTGAGTACTCGCGCGTCCAATCAATCGCCGGTCCGCTAT ATGCTGAAGACCACCGCCTTTGTGACTACTGCTCTCACCGTCGCTGGAGGATCATGGTACGTGGCAGTCAACATG ACCACTCCCAGCGACCTTACGGCGATCTATAACTGCTCGGCGTTCTTCGCATATGCCTTTTCGATTCCGCTATTG AAGGAGAAACTCCGAATTGACAAGGTCTTTTCCGTGGCCGTGGCTACCATCGGCGTCATGGTCGTTGCCTATGGG GATGGGCCTCATAAGAAGGTCCCGAAAGGAGGCACAGATGGCAACGGGGGACAGAACCGATTGGTCGGAAACATT GTTATCGGCGTTGGAAGTATTCTCTATGGCCTTTACGAGGTTCTCTATAAACGCTTTGCCTGTCCTCCGGAAGGT ACCAGCTCTGGCCGGGGTACGATCTTTGCCAATACTTTTGGCAGTCTAATAGGGGCTTTCACCCTGTTGGTACTA TGGATCCCATTACCATTTCTGCACTGGACAGGATGGGAGACATTTGAATGGCCGACTGGCGAAGCAGCATGGATG CTGCTCATTTCCGTGGGTGCCAATGCTAGTAAGTACCACACCAGCGTTCAAAGCAGACACAGAAGCTAACACTAA GATAGCGTTCTCGGGCTCTTTCCTTGTGCTCATCTCCCTCACATCGCCCGTCCTATCCTCAGTCGCCGCGCTCCT TACTATTTTCCTCGTCGCTCTGGTGGACTGGTTCCGAACTGGGAACTCACTTTCTCTAGCCTCGATTATTGGAGG CGTCTTGATTACGGTGGCATTTTTCATGCTGAGCATCAGCACGTATAGAGAGATGAATGAGGAGCGGAAGAAGCA TCTAGAGAACGATGAGATCGAGTCTGACAGTGATGCATAG |