© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2055.t1 |
| Gene name | |
| Location | scaffold_02:1551439..1552693 |
| Strand | + |
| Gene length (bp) | 1254 |
| Transcript length (bp) | 1254 |
| Coding sequence length (bp) | 1254 |
| Protein length (aa) | 418 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03095 | PTPA | Phosphotyrosyl phosphate activator (PTPA) protein | 9.8E-109 | 58 | 352 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019211 | phosphatase activator activity | Yes |
| GO:0030234 | enzyme regulator activity | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0019208 | phosphatase regulator activity | No |
| GO:0008047 | enzyme activator activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 70.32 | 42.26 | 98.38 |
| 5d_25C | Five days - 25 degrees Celsius | 83.73 | 50.82 | 116.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 81.81 | 49.75 | 113.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 107.43 | 65.85 | 149.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 122.39 | 74.46 | 170.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 69.90 | 41.91 | 97.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.504981 | no |
| 3d_25C | 7d_25C | 0.578654 | no |
| 3d_25C | 7d_15C | 0.005626 | yes |
| 3d_25C | 7d_30C | 0.987112 | no |
| 3d_25C | 10d_25C | 0.047134 | yes |
| 5d_25C | 7d_25C | 0.948586 | no |
| 5d_25C | 7d_15C | 0.078462 | no |
| 5d_25C | 7d_30C | 0.491467 | no |
| 5d_25C | 10d_25C | 0.283136 | no |
| 7d_25C | 7d_15C | 0.060029 | no |
| 7d_25C | 7d_30C | 0.557995 | no |
| 7d_25C | 10d_25C | 0.224884 | no |
| 7d_15C | 7d_30C | 0.007779 | yes |
| 7d_15C | 10d_25C | 0.625912 | no |
| 7d_30C | 10d_25C | 0.041603 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2055.t1 MASQAPLPSPTGKVDLSKKLSELRSNSRRGNPSSRDLTPATPPLPSPPDLSGHQYQQPIRRILSSKDHELFLASP TYKLVLAFIFGLTDSVRGHSIPDLQKKPQSESISKVLSVITQIRALLAKNPPIDQGGSRFGNPAFRALCDDVSAQ SASWHTNILGLKDSGAIEEASTYLIHCLGSRERIDYGSGHELNFMMWLLCLYQLGLLPASDFPAVVIKVYVEYMH LMREIQSAYYLEPAGSHGVWGLDDYHFLPFLFGASQLVGHPYITPLGIHNTATLDEEGDNYLYLDQVRWVESVKL VKGLRWHSPMLDDISGSKNWAKVESGMKKMFVKEVLGKLPIMQHFLFGSLIPAAEGMTDSSERDAEHEHAHGHDH PHESSDWFGDCCGIKVPSTVAAGAEMRKRMGGGSDLRPIPFD* |
| Coding | >Pro_DTO377G3_2|g2055.t1 ATGGCGTCACAGGCACCTTTACCATCTCCTACGGGGAAGGTCGATCTCTCGAAAAAGCTCTCTGAGTTACGGTCA AATAGCCGAAGGGGAAACCCCAGTTCCCGAGATCTGACTCCAGCAACCCCTCCTCTCCCTTCGCCGCCCGACCTC TCCGGCCACCAGTACCAGCAACCAATCCGCCGCATCCTATCTTCTAAAGACCATGAGCTCTTCCTCGCATCGCCG ACCTATAAACTTGTCCTCGCCTTTATATTCGGGCTAACTGATTCTGTGCGGGGGCATTCTATCCCGGACCTCCAG AAAAAGCCTCAATCCGAATCCATCTCCAAGGTCCTCTCAGTCATCACTCAAATACGCGCCCTCCTAGCCAAAAAC CCGCCAATTGACCAGGGTGGATCCCGATTCGGCAACCCCGCCTTCCGAGCATTGTGCGACGATGTAAGCGCCCAG AGCGCATCATGGCACACCAACATTCTGGGGTTGAAAGACTCTGGCGCAATCGAAGAAGCGTCGACATATTTAATC CACTGCCTGGGCTCACGGGAGCGGATTGACTACGGCTCCGGCCATGAACTCAACTTCATGATGTGGCTGCTATGC CTGTACCAGCTAGGTCTTCTCCCCGCCAGCGACTTCCCCGCTGTCGTGATCAAGGTCTATGTCGAGTACATGCAT CTCATGCGCGAGATCCAGTCAGCTTACTACCTCGAGCCTGCTGGATCGCACGGTGTCTGGGGTCTGGATGACTAC CATTTCCTGCCGTTCTTGTTCGGAGCTAGCCAGCTTGTCGGGCACCCGTATATTACTCCGCTGGGTATTCATAAC ACAGCTACTTTAGATGAAGAGGGTGATAACTATCTCTATCTGGATCAGGTCCGATGGGTTGAGAGTGTCAAATTG GTGAAGGGACTGCGTTGGCATAGCCCAATGCTGGACGATATCTCTGGTTCTAAGAATTGGGCCAAGGTTGAGAGC GGCATGAAGAAGATGTTCGTTAAGGAAGTGCTGGGAAAACTTCCTATTATGCAACATTTCTTGTTCGGAAGTCTT ATACCTGCTGCCGAAGGCATGACCGATTCTTCTGAGAGAGATGCTGAGCATGAGCATGCCCATGGCCACGACCAT CCTCACGAGAGTTCAGACTGGTTCGGTGACTGCTGCGGCATCAAGGTACCCAGTACCGTGGCTGCGGGCGCTGAG ATGCGTAAGCGTATGGGCGGCGGATCGGACCTGCGCCCAATTCCTTTCGATTAA |
| Transcript | >Pro_DTO377G3_2|g2055.t1 ATGGCGTCACAGGCACCTTTACCATCTCCTACGGGGAAGGTCGATCTCTCGAAAAAGCTCTCTGAGTTACGGTCA AATAGCCGAAGGGGAAACCCCAGTTCCCGAGATCTGACTCCAGCAACCCCTCCTCTCCCTTCGCCGCCCGACCTC TCCGGCCACCAGTACCAGCAACCAATCCGCCGCATCCTATCTTCTAAAGACCATGAGCTCTTCCTCGCATCGCCG ACCTATAAACTTGTCCTCGCCTTTATATTCGGGCTAACTGATTCTGTGCGGGGGCATTCTATCCCGGACCTCCAG AAAAAGCCTCAATCCGAATCCATCTCCAAGGTCCTCTCAGTCATCACTCAAATACGCGCCCTCCTAGCCAAAAAC CCGCCAATTGACCAGGGTGGATCCCGATTCGGCAACCCCGCCTTCCGAGCATTGTGCGACGATGTAAGCGCCCAG AGCGCATCATGGCACACCAACATTCTGGGGTTGAAAGACTCTGGCGCAATCGAAGAAGCGTCGACATATTTAATC CACTGCCTGGGCTCACGGGAGCGGATTGACTACGGCTCCGGCCATGAACTCAACTTCATGATGTGGCTGCTATGC CTGTACCAGCTAGGTCTTCTCCCCGCCAGCGACTTCCCCGCTGTCGTGATCAAGGTCTATGTCGAGTACATGCAT CTCATGCGCGAGATCCAGTCAGCTTACTACCTCGAGCCTGCTGGATCGCACGGTGTCTGGGGTCTGGATGACTAC CATTTCCTGCCGTTCTTGTTCGGAGCTAGCCAGCTTGTCGGGCACCCGTATATTACTCCGCTGGGTATTCATAAC ACAGCTACTTTAGATGAAGAGGGTGATAACTATCTCTATCTGGATCAGGTCCGATGGGTTGAGAGTGTCAAATTG GTGAAGGGACTGCGTTGGCATAGCCCAATGCTGGACGATATCTCTGGTTCTAAGAATTGGGCCAAGGTTGAGAGC GGCATGAAGAAGATGTTCGTTAAGGAAGTGCTGGGAAAACTTCCTATTATGCAACATTTCTTGTTCGGAAGTCTT ATACCTGCTGCCGAAGGCATGACCGATTCTTCTGAGAGAGATGCTGAGCATGAGCATGCCCATGGCCACGACCAT CCTCACGAGAGTTCAGACTGGTTCGGTGACTGCTGCGGCATCAAGGTACCCAGTACCGTGGCTGCGGGCGCTGAG ATGCGTAAGCGTATGGGCGGCGGATCGGACCTGCGCCCAATTCCTTTCGATTAA |
| Gene | >Pro_DTO377G3_2|g2055.t1 ATGGCGTCACAGGCACCTTTACCATCTCCTACGGGGAAGGTCGATCTCTCGAAAAAGCTCTCTGAGTTACGGTCA AATAGCCGAAGGGGAAACCCCAGTTCCCGAGATCTGACTCCAGCAACCCCTCCTCTCCCTTCGCCGCCCGACCTC TCCGGCCACCAGTACCAGCAACCAATCCGCCGCATCCTATCTTCTAAAGACCATGAGCTCTTCCTCGCATCGCCG ACCTATAAACTTGTCCTCGCCTTTATATTCGGGCTAACTGATTCTGTGCGGGGGCATTCTATCCCGGACCTCCAG AAAAAGCCTCAATCCGAATCCATCTCCAAGGTCCTCTCAGTCATCACTCAAATACGCGCCCTCCTAGCCAAAAAC CCGCCAATTGACCAGGGTGGATCCCGATTCGGCAACCCCGCCTTCCGAGCATTGTGCGACGATGTAAGCGCCCAG AGCGCATCATGGCACACCAACATTCTGGGGTTGAAAGACTCTGGCGCAATCGAAGAAGCGTCGACATATTTAATC CACTGCCTGGGCTCACGGGAGCGGATTGACTACGGCTCCGGCCATGAACTCAACTTCATGATGTGGCTGCTATGC CTGTACCAGCTAGGTCTTCTCCCCGCCAGCGACTTCCCCGCTGTCGTGATCAAGGTCTATGTCGAGTACATGCAT CTCATGCGCGAGATCCAGTCAGCTTACTACCTCGAGCCTGCTGGATCGCACGGTGTCTGGGGTCTGGATGACTAC CATTTCCTGCCGTTCTTGTTCGGAGCTAGCCAGCTTGTCGGGCACCCGTATATTACTCCGCTGGGTATTCATAAC ACAGCTACTTTAGATGAAGAGGGTGATAACTATCTCTATCTGGATCAGGTCCGATGGGTTGAGAGTGTCAAATTG GTGAAGGGACTGCGTTGGCATAGCCCAATGCTGGACGATATCTCTGGTTCTAAGAATTGGGCCAAGGTTGAGAGC GGCATGAAGAAGATGTTCGTTAAGGAAGTGCTGGGAAAACTTCCTATTATGCAACATTTCTTGTTCGGAAGTCTT ATACCTGCTGCCGAAGGCATGACCGATTCTTCTGAGAGAGATGCTGAGCATGAGCATGCCCATGGCCACGACCAT CCTCACGAGAGTTCAGACTGGTTCGGTGACTGCTGCGGCATCAAGGTACCCAGTACCGTGGCTGCGGGCGCTGAG ATGCGTAAGCGTATGGGCGGCGGATCGGACCTGCGCCCAATTCCTTTCGATTAA |