© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2054.t1 |
| Gene name | |
| Location | scaffold_02:1549900..1550854 |
| Strand | - |
| Gene length (bp) | 954 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02656 | DUF202 | Domain of unknown function (DUF202) | 7.8E-22 | 142 | 251 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 152 | 174 | 22 |
| 2 | 227 | 249 | 22 |
| 3 | 264 | 286 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.09 | 16.01 | 50.16 |
| 5d_25C | Five days - 25 degrees Celsius | 33.67 | 16.46 | 50.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.22 | 10.87 | 37.57 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.83 | 13.92 | 45.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 36.85 | 18.26 | 55.43 |
| 7d_30C | Seven days - 30 degrees Celsius | 45.99 | 24.18 | 67.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.971142 | no |
| 3d_25C | 7d_25C | 0.341984 | no |
| 3d_25C | 7d_15C | 0.780998 | no |
| 3d_25C | 7d_30C | 0.259033 | no |
| 3d_25C | 10d_25C | 0.799066 | no |
| 5d_25C | 7d_25C | 0.313873 | no |
| 5d_25C | 7d_15C | 0.821446 | no |
| 5d_25C | 7d_30C | 0.297406 | no |
| 5d_25C | 10d_25C | 0.761147 | no |
| 7d_25C | 7d_15C | 0.167666 | no |
| 7d_25C | 7d_30C | 0.021417 | yes |
| 7d_25C | 10d_25C | 0.573251 | no |
| 7d_15C | 7d_30C | 0.480026 | no |
| 7d_15C | 10d_25C | 0.543637 | no |
| 7d_30C | 10d_25C | 0.131638 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2054.t1 MNTSDSLAPPLRGSSTSGGAKNSHSSSRSPTDSALSSSSSSTRSHSSSSTRNHERNQNQPQTSYQSTESTPINTA GPAGRNYQSTEQADASQLKDQLNNANPGNASQSTTQDSAPEPHQSWYSRFADRYGSLELENKGSVARDHLALERT FLAWMRTSLAFASIGIAVTQLFRLNSASTKTKTNFFDPASGLHAGILPPYLDSSGYDSADLHTSSATARLRSVGK PLGSTFIGVSILILMIGFHRYFQSQYWIIRGKFPASRGSVALTAFVAASLIIATLAVILAVSPGAIEN* |
| Coding | >Pro_DTO377G3_2|g2054.t1 ATGAATACATCCGACTCATTGGCGCCGCCTCTGAGAGGCTCCAGCACCTCTGGGGGAGCCAAAAACAGCCACTCA TCGTCACGCTCGCCCACAGATTCAGCTCTGTCATCCTCCTCCAGCAGCACCCGGTCCCACTCAAGCTCCTCGACC CGAAACCACGAGCGTAACCAGAACCAACCTCAGACATCATACCAATCCACCGAATCTACCCCAATCAACACAGCC GGTCCCGCGGGGCGCAATTATCAGTCTACAGAGCAAGCAGACGCCTCCCAGCTCAAAGACCAATTAAACAACGCG AACCCTGGCAATGCCAGCCAATCAACCACCCAAGACTCGGCCCCCGAGCCCCATCAGTCCTGGTATAGTCGATTC GCAGATCGATACGGCAGTCTCGAGCTAGAGAACAAAGGCAGTGTGGCCCGCGACCACCTCGCATTAGAACGAACC TTCCTAGCCTGGATGCGCACCTCCCTAGCCTTCGCCTCAATCGGCATCGCAGTAACGCAACTCTTCCGCCTGAAC AGCGCCTCCACAAAGACAAAAACCAACTTCTTCGACCCAGCATCCGGCTTACACGCAGGCATCCTTCCACCGTAC CTCGACTCGTCAGGCTACGATTCAGCCGACCTCCACACCTCCTCTGCAACCGCCCGTCTTCGTAGCGTGGGTAAA CCCCTCGGCTCCACTTTCATCGGCGTCTCGATCCTTATCCTTATGATTGGCTTCCACCGCTACTTCCAGAGTCAG TATTGGATTATTCGGGGGAAGTTCCCGGCTAGTCGGGGTAGTGTGGCACTTACGGCGTTTGTGGCTGCTTCGCTG ATTATTGCTACTCTTGCGGTTATCTTGGCGGTCTCGCCGGGAGCCATTGAGAATTAG |
| Transcript | >Pro_DTO377G3_2|g2054.t1 ATGAATACATCCGACTCATTGGCGCCGCCTCTGAGAGGCTCCAGCACCTCTGGGGGAGCCAAAAACAGCCACTCA TCGTCACGCTCGCCCACAGATTCAGCTCTGTCATCCTCCTCCAGCAGCACCCGGTCCCACTCAAGCTCCTCGACC CGAAACCACGAGCGTAACCAGAACCAACCTCAGACATCATACCAATCCACCGAATCTACCCCAATCAACACAGCC GGTCCCGCGGGGCGCAATTATCAGTCTACAGAGCAAGCAGACGCCTCCCAGCTCAAAGACCAATTAAACAACGCG AACCCTGGCAATGCCAGCCAATCAACCACCCAAGACTCGGCCCCCGAGCCCCATCAGTCCTGGTATAGTCGATTC GCAGATCGATACGGCAGTCTCGAGCTAGAGAACAAAGGCAGTGTGGCCCGCGACCACCTCGCATTAGAACGAACC TTCCTAGCCTGGATGCGCACCTCCCTAGCCTTCGCCTCAATCGGCATCGCAGTAACGCAACTCTTCCGCCTGAAC AGCGCCTCCACAAAGACAAAAACCAACTTCTTCGACCCAGCATCCGGCTTACACGCAGGCATCCTTCCACCGTAC CTCGACTCGTCAGGCTACGATTCAGCCGACCTCCACACCTCCTCTGCAACCGCCCGTCTTCGTAGCGTGGGTAAA CCCCTCGGCTCCACTTTCATCGGCGTCTCGATCCTTATCCTTATGATTGGCTTCCACCGCTACTTCCAGAGTCAG TATTGGATTATTCGGGGGAAGTTCCCGGCTAGTCGGGGTAGTGTGGCACTTACGGCGTTTGTGGCTGCTTCGCTG ATTATTGCTACTCTTGCGGTTATCTTGGCGGTCTCGCCGGGAGCCATTGAGAATTAG |
| Gene | >Pro_DTO377G3_2|g2054.t1 ATGAATACATCCGACTCATTGGCGCCGCCTCTGAGAGGCTCCAGCACCTCTGGGGGAGCCAAAAACAGCCACTCA TCGTCACGCTCGCCCACAGATTCAGCTCTGTCATCCTCCTCCAGCAGCACCCGGTCCCACTCAAGCTCCTCGACC CGAAACCACGAGCGTAACCAGAACCAACCTCAGACATCATACCAATCCACCGAATCTACCCCAATCAACACAGCC GGTCCCGCGGGGCGCAATTATCAGTCTACAGAGCAAGCAGACGCCTCCCAGCTCAAAGACCAATTAAACAACGCG AACCCTGGCAATGCCAGCCAATCAACCACCCAAGACTCGGCCCCCGAGCCCCATCAGTCCTGGTATAGTCGATTC GCAGATCGATACGGCAGTCTCGAGCTAGAGAACAAAGGCAGTGTGGCCCGCGACCACCTCGCATTAGGTACAATA TGCACACGCAGCCTATATTTAAAACATGCATAGACACCCCTGACACCCACCCCCTTTCCAACAGAACGAACCTTC CTAGCCTGGATGCGCACCTCCCTAGCCTTCGCCTCAATCGGCATCGCAGTAACGCAACTCTTCCGCCTGAACAGC GCCTCCACAAAGACAAAAACCAACTTCTTCGACCCAGCATCCGGCTTACACGCAGGCATCCTTCCACCGTACCTC GACTCGTCAGGCTACGATTCAGCCGACCTCCACACCTCCTCTGCAACCGCCCGTCTTCGTAGCGTGGGTAAACCC CTCGGCTCCACTTTCATCGGCGTCTCGATCCTTATCCTTATGATTGGCTTCCACCGCTACTTCCAGAGTCAGTAT TGGATTATTCGGGGGAAGTTCCCGGCTAGTCGGGGTAGTGTGGCACTTACGGCGTTTGTGGCTGCTTCGCTGATT ATTGCTACTCTTGCGGTTATCTTGGCGGTCTCGCCGGGAGCCATTGAGAATTAG |