© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2048.t1 |
| Gene name | |
| Location | scaffold_02:1537964..1539563 |
| Strand | - |
| Gene length (bp) | 1599 |
| Transcript length (bp) | 1377 |
| Coding sequence length (bp) | 1377 |
| Protein length (aa) | 459 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20511 | PMI_typeI_cat | Phosphomannose isomerase type I, catalytic domain | 1.3E-61 | 5 | 151 |
| PF20512 | PMI_typeI_hel | Phosphomannose isomerase type I, helical insertion domain | 3.0E-22 | 167 | 272 |
| PF01238 | PMI_typeI_C | Phosphomannose isomerase type I C-terminal | 2.4E-14 | 362 | 408 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004476 | mannose-6-phosphate isomerase activity | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016853 | isomerase activity | No |
| GO:0043169 | cation binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0016860 | intramolecular oxidoreductase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 309.93 | 183.15 | 436.70 |
| 5d_25C | Five days - 25 degrees Celsius | 177.61 | 106.07 | 249.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 212.32 | 124.48 | 300.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 115.02 | 69.68 | 160.35 |
| 7d_15C | Seven days - 15 degrees Celsius | 258.50 | 146.51 | 370.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 94.62 | 58.00 | 131.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.008469 | yes |
| 3d_25C | 7d_25C | 0.093846 | no |
| 3d_25C | 7d_15C | 0.505578 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.499385 | no |
| 5d_25C | 7d_15C | 0.102709 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.038386 | yes |
| 7d_25C | 7d_15C | 0.468076 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.002297 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.420629 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2048.t1 MQIPLLRLQCGVNSYDWGKVGQESAAAKYAATTAAPDFTIESDKPYAELWMGTHPSLPSKDVETQRTLLDMVQDN QALLSTDVSERFGGKLPFLFKVLSIRKALSIQAHPNKKLAEQLHARDPKNYPDDNHKPEMTIAITPFEGMCGFRP LAEITHFLQAVEPLRTLVGNQAASEFEQIVKGNENSEEPAVIRKNKEALRSLFTTLMESSSEKIETACKNLISAA DNSPDSFATLAGDVETNPTNPAELAALAKRLNGQFPNDIGLFVFFFLNFVKLQPGEGMFLKADDIHAYISGDVIE CMASSDNVVRAGFTPKFKDVDTLTQMLTYSYAPIEEQKIQATDYPYAILNATAYSSASSVMLYDPPIDEFSVIKA DLNRTGAKATFDPIDGPSIFICTRGKGKITVSNKTEEVKEGYVFFVGATAECVIENTGSGEGDDDVFTTYKAFCE LTPTGEEN* |
| Coding | >Pro_DTO377G3_2|g2048.t1 ATGCAGATACCACTACTTCGGCTGCAATGCGGCGTCAATAGCTACGACTGGGGCAAGGTTGGCCAAGAGTCAGCA GCGGCCAAGTATGCCGCCACAACAGCCGCCCCGGACTTTACAATTGAGTCTGACAAGCCCTATGCAGAACTCTGG ATGGGCACACACCCCTCTCTTCCATCGAAAGATGTGGAGACACAGCGTACCCTCCTCGACATGGTTCAGGATAAC CAGGCCTTGCTGTCGACCGATGTGAGTGAACGATTTGGAGGCAAACTCCCGTTCCTGTTCAAGGTGCTTTCTATC CGTAAAGCGCTCAGCATCCAAGCCCATCCAAACAAGAAGCTCGCGGAGCAGCTCCATGCCCGGGACCCAAAGAAC TATCCCGATGACAATCACAAGCCCGAGATGACCATTGCCATCACTCCGTTCGAGGGTATGTGTGGCTTCCGCCCG CTCGCCGAGATCACACATTTCCTCCAAGCTGTAGAGCCTCTGCGCACCCTTGTTGGCAATCAGGCGGCGAGTGAG TTCGAGCAAATTGTCAAGGGCAACGAAAACTCAGAGGAACCTGCTGTCATCCGAAAGAACAAAGAAGCGCTACGC TCCCTCTTCACCACGCTGATGGAGTCTTCATCCGAAAAGATAGAGACAGCCTGCAAGAACCTTATCTCGGCTGCG GACAATAGCCCCGACAGTTTTGCAACCCTGGCAGGTGATGTGGAGACGAACCCTACCAACCCCGCTGAGCTGGCT GCGCTTGCCAAGCGCCTGAACGGACAGTTCCCGAACGACATCGGCCTGTTCGTATTCTTCTTCCTCAACTTTGTC AAGCTGCAGCCTGGCGAGGGTATGTTCCTGAAGGCAGATGATATCCACGCGTATATTTCCGGTGATGTCATCGAG TGCATGGCCTCCTCTGACAACGTGGTGCGAGCGGGCTTCACCCCGAAGTTCAAGGACGTTGACACCCTCACCCAG ATGCTGACCTACTCCTACGCACCAATCGAGGAGCAGAAGATCCAGGCCACAGACTACCCGTATGCCATTTTGAAC GCCACTGCTTACTCTAGCGCCTCGTCCGTGATGCTCTACGACCCTCCTATCGACGAGTTCAGTGTTATCAAGGCC GACTTGAACCGAACTGGCGCCAAGGCCACTTTTGACCCGATCGACGGCCCCAGTATCTTCATATGTACACGTGGC AAGGGCAAGATTACTGTTAGCAACAAGACCGAGGAGGTCAAGGAGGGCTATGTTTTCTTCGTCGGCGCTACCGCT GAGTGTGTGATTGAGAACACTGGCAGCGGTGAGGGCGATGATGATGTCTTTACGACCTACAAAGCATTCTGTGAA TTGACCCCGACCGGTGAGGAAAACTAG |
| Transcript | >Pro_DTO377G3_2|g2048.t1 ATGCAGATACCACTACTTCGGCTGCAATGCGGCGTCAATAGCTACGACTGGGGCAAGGTTGGCCAAGAGTCAGCA GCGGCCAAGTATGCCGCCACAACAGCCGCCCCGGACTTTACAATTGAGTCTGACAAGCCCTATGCAGAACTCTGG ATGGGCACACACCCCTCTCTTCCATCGAAAGATGTGGAGACACAGCGTACCCTCCTCGACATGGTTCAGGATAAC CAGGCCTTGCTGTCGACCGATGTGAGTGAACGATTTGGAGGCAAACTCCCGTTCCTGTTCAAGGTGCTTTCTATC CGTAAAGCGCTCAGCATCCAAGCCCATCCAAACAAGAAGCTCGCGGAGCAGCTCCATGCCCGGGACCCAAAGAAC TATCCCGATGACAATCACAAGCCCGAGATGACCATTGCCATCACTCCGTTCGAGGGTATGTGTGGCTTCCGCCCG CTCGCCGAGATCACACATTTCCTCCAAGCTGTAGAGCCTCTGCGCACCCTTGTTGGCAATCAGGCGGCGAGTGAG TTCGAGCAAATTGTCAAGGGCAACGAAAACTCAGAGGAACCTGCTGTCATCCGAAAGAACAAAGAAGCGCTACGC TCCCTCTTCACCACGCTGATGGAGTCTTCATCCGAAAAGATAGAGACAGCCTGCAAGAACCTTATCTCGGCTGCG GACAATAGCCCCGACAGTTTTGCAACCCTGGCAGGTGATGTGGAGACGAACCCTACCAACCCCGCTGAGCTGGCT GCGCTTGCCAAGCGCCTGAACGGACAGTTCCCGAACGACATCGGCCTGTTCGTATTCTTCTTCCTCAACTTTGTC AAGCTGCAGCCTGGCGAGGGTATGTTCCTGAAGGCAGATGATATCCACGCGTATATTTCCGGTGATGTCATCGAG TGCATGGCCTCCTCTGACAACGTGGTGCGAGCGGGCTTCACCCCGAAGTTCAAGGACGTTGACACCCTCACCCAG ATGCTGACCTACTCCTACGCACCAATCGAGGAGCAGAAGATCCAGGCCACAGACTACCCGTATGCCATTTTGAAC GCCACTGCTTACTCTAGCGCCTCGTCCGTGATGCTCTACGACCCTCCTATCGACGAGTTCAGTGTTATCAAGGCC GACTTGAACCGAACTGGCGCCAAGGCCACTTTTGACCCGATCGACGGCCCCAGTATCTTCATATGTACACGTGGC AAGGGCAAGATTACTGTTAGCAACAAGACCGAGGAGGTCAAGGAGGGCTATGTTTTCTTCGTCGGCGCTACCGCT GAGTGTGTGATTGAGAACACTGGCAGCGGTGAGGGCGATGATGATGTCTTTACGACCTACAAAGCATTCTGTGAA TTGACCCCGACCGGTGAGGAAAACTAG |
| Gene | >Pro_DTO377G3_2|g2048.t1 ATGCAGATACCACTACTTCGGCTGCAATGCGGTAAGTTTGGGGATGCTCAATAAGAGAGACATAGCTGACATACT TTCCTTTAGGCGTCAATAGCTACGACTGGGGTAAGCTAGTCCCGCTTGCGATTGTGTTCCCCGCACTAACATCCC GTCATAGGCAAGGTTGGCCAAGAGTCAGCAGCGGCCAAGTATGCCGCCACAACAGCCGCCCCGGACTTTACAATT GAGTCTGACAAGCCCTATGCAGAAGTAAGTGAGAGATCAATAGTAATATTCGACTTGATGGGCTCACAATTTATA GCTCTGGATGGGCACACACCCCTCTCTTCCATCGAAAGATGTGGAGACACAGCGTACCCTCCTCGACATGGTTCA GGATAACCAGGCCTTGCTGTCGACCGATGTGAGTGAACGATTTGGAGGCAAACTCCCGTTCCTGTTCAAGGTGCT TTCTATCCGTAAAGCGCTCAGCATCCAAGCCCATCCAAACAAGAAGCTCGCGGAGCAGCTCCATGCCCGGGACCC AAAGAACTATCCCGGTGAGTGGTACTTCGGATCACACTCGATACACGAGCACCCGGAAACATGGCTAACCGCTTG CAAGATGACAATCACAAGCCCGAGATGACCATTGCCATCACTCCGTTCGAGGGTATGTGTGGCTTCCGCCCGCTC GCCGAGATCACACATTTCCTCCAAGCTGTAGAGCCTCTGCGCACCCTTGTTGGCAATCAGGCGGCGAGTGAGTTC GAGCAAATTGTCAAGGGCAACGAAAACTCAGAGGAACCTGCTGTCATCCGAAAGAACAAAGAAGCGCTACGCTCC CTCTTCACCACGCTGATGGAGTCTTCATCCGAAAAGATAGAGACAGCCTGCAAGAACCTTATCTCGGCTGCGGAC AATAGCCCCGACAGTTTTGCAACCCTGGCAGGTGATGTGGAGACGAACCCTACCAACCCCGCTGAGCTGGCTGCG CTTGCCAAGCGCCTGAACGGACAGTTCCCGAACGACATCGGCCTGTTCGTATTCTTCTTCCTCAACTTTGTCAAG CTGCAGCCTGGCGAGGGTATGTTCCTGAAGGCAGATGATATCCACGCGTATATTTCCGGTGATGTCATCGAGTGC ATGGCCTCCTCTGACAACGTGGTGCGAGCGGGCTTCACCCCGAAGTTCAAGGACGTTGACACCCTCACCCAGATG CTGACCTACTCCTACGCACCAATCGAGGAGCAGAAGATCCAGGCCACAGACTACCCGTATGCCATTTTGAACGCC ACTGCTTACTCTAGCGCCTCGTCCGTGATGCTCTACGACCCTCCTATCGACGAGTTCAGTGTTATCAAGGCCGAC TTGAACCGAACTGGCGCCAAGGCCACTTTTGACCCGATCGACGGCCCCAGTATCTTCATATGTACACGTGGCAAG GGCAAGATTACTGTTAGCAACAAGACCGAGGAGGTCAAGGAGGGCTATGTTTTCTTCGTCGGCGCTACCGCTGAG TGTGTGATTGAGAACACTGGCAGCGGTGAGGGCGATGATGATGTCTTTACGACCTACAAAGCATTCTGTGAATTG ACCCCGACCGGTGAGGAAAACTAG |