© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2046.t1 |
| Gene name | |
| Location | scaffold_02:1530171..1531908 |
| Strand | + |
| Gene length (bp) | 1737 |
| Transcript length (bp) | 1587 |
| Coding sequence length (bp) | 1587 |
| Protein length (aa) | 529 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.6E-106 | 10 | 485 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.1E-25 | 62 | 426 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 63 | 85 | 22 |
| 3 | 92 | 114 | 22 |
| 4 | 118 | 140 | 22 |
| 5 | 147 | 169 | 22 |
| 6 | 184 | 203 | 19 |
| 7 | 274 | 296 | 22 |
| 8 | 306 | 328 | 22 |
| 9 | 341 | 363 | 22 |
| 10 | 378 | 400 | 22 |
| 11 | 421 | 443 | 22 |
| 12 | 447 | 469 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.30 | 2.76 | 11.85 |
| 5d_25C | Five days - 25 degrees Celsius | 1.74 | 0.23 | 3.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.28 | 0.17 | 2.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.15 | 0.09 | 2.20 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.57 | 2.98 | 12.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.66 | 0.29 | 3.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.001278 | yes |
| 3d_25C | 7d_15C | 0.947101 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.605737 | no |
| 5d_25C | 7d_15C | 0.001278 | yes |
| 5d_25C | 7d_30C | 0.946925 | no |
| 5d_25C | 10d_25C | 0.458917 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.668960 | no |
| 7d_25C | 10d_25C | 0.879740 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.504154 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2046.t1 MMITNIYVITVIAVIGGSLFGFDLSSMSAILSTKQYRCYFNEGPNGPPFNDESHCSGPGSNLQGGITASMSGGSF IGALISGFVTDIFGRKSAIQLGAIVWIIGSTLCCAAQNIPMLIVGRFVNGLCVGICSAQVPVYVGELAPPHLRGL VMGAQQWAITWGVLIMFYISYGSSFLTGPLAFRLPWGLQMIPAIFLFIGLLFTPESPRWLAKKDRWEECCHIISS IHANNNLDENFIQMEIQQLKDACELERDRTDNSYIDLFRPHMLWRTHIVVFVQIWCQLTGINAILYYITYIFGMT GLSGSSNLVASSISSVINVIMTIPALLFMDRVGRRPLLIGGSISLFIWWTLCAGLMGGYGVAAPPGGLDNIPEES WLITGAPAKVVIACSYLIVASFAPTWGPIEWVYPSELFPLRLRGKAAALSTASNWAFNFALSYFIPPAFVNITWK TYIIFAVFAFAMTLHVFFVFPETSGRTLEEVEDAFKGVKLAWNMGAEKFKDEEITLEYEPKQDESEKAVHVEDTI RST* |
| Coding | >Pro_DTO377G3_2|g2046.t1 ATGATGATTACCAATATTTATGTGATCACAGTCATCGCTGTGATCGGAGGCTCGCTCTTCGGCTTCGATCTGTCT TCGATGTCTGCCATCCTTTCTACCAAGCAATACCGATGCTATTTCAACGAGGGACCTAATGGGCCTCCATTCAAT GATGAGTCTCACTGTTCCGGCCCAGGTTCCAATCTGCAAGGTGGAATCACCGCCTCCATGTCCGGGGGTTCTTTC ATCGGGGCCTTGATCTCGGGCTTCGTGACTGATATCTTCGGCCGAAAGTCGGCGATTCAATTGGGAGCTATCGTA TGGATTATCGGAAGTACCCTCTGTTGCGCCGCTCAGAACATCCCTATGTTAATCGTGGGTCGATTCGTCAACGGT CTGTGTGTCGGAATATGCTCAGCCCAAGTTCCTGTGTATGTTGGAGAGCTCGCGCCTCCTCATCTCAGGGGCTTG GTAATGGGTGCTCAGCAATGGGCGATCACATGGGGTGTTTTGATCATGTTCTATATCTCGTACGGCTCATCTTTC CTCACAGGCCCTTTGGCTTTCCGGCTACCTTGGGGTCTTCAAATGATCCCCGCGATTTTCCTCTTCATAGGGTTA TTGTTCACCCCCGAGTCTCCACGATGGTTGGCAAAGAAAGATCGCTGGGAGGAATGTTGTCACATTATCTCTTCT ATCCATGCCAACAACAACCTCGACGAGAACTTTATCCAGATGGAGATCCAACAGCTCAAGGATGCTTGTGAATTA GAGCGCGACAGGACCGACAACAGTTACATCGATCTTTTCCGGCCGCATATGCTTTGGCGCACGCACATTGTCGTC TTTGTCCAGATCTGGTGTCAACTCACTGGAATCAACGCCATTCTCTACTACATTACATATATTTTCGGAATGACA GGCCTCAGTGGCAGCTCCAACTTGGTGGCGTCATCCATCAGCTCCGTGATCAACGTGATTATGACAATCCCCGCA CTCCTCTTCATGGATCGTGTCGGGCGTCGTCCATTACTCATCGGAGGCAGTATTTCTCTCTTCATCTGGTGGACC CTATGTGCTGGCCTAATGGGAGGCTACGGTGTCGCAGCCCCGCCAGGTGGCTTGGACAATATCCCCGAAGAGAGT TGGTTGATCACAGGAGCTCCCGCCAAGGTCGTGATTGCTTGCTCCTATCTCATCGTGGCCTCTTTCGCGCCAACA TGGGGCCCTATTGAGTGGGTGTATCCGTCGGAGCTCTTCCCCCTCCGTCTACGAGGCAAAGCCGCTGCCTTGTCC ACAGCCAGCAACTGGGCGTTCAATTTCGCTCTGAGCTATTTCATTCCGCCTGCTTTTGTCAACATCACTTGGAAG ACTTATATCATTTTTGCAGTCTTCGCCTTCGCTATGACCCTGCACGTCTTCTTCGTTTTCCCTGAGACATCGGGG AGGACACTGGAGGAAGTTGAAGATGCGTTCAAGGGGGTTAAGCTGGCTTGGAATATGGGTGCAGAGAAATTCAAG GATGAAGAGATAACGCTTGAATATGAGCCGAAGCAAGACGAAAGTGAAAAGGCTGTGCACGTTGAGGATACTATA AGATCGACGTGA |
| Transcript | >Pro_DTO377G3_2|g2046.t1 ATGATGATTACCAATATTTATGTGATCACAGTCATCGCTGTGATCGGAGGCTCGCTCTTCGGCTTCGATCTGTCT TCGATGTCTGCCATCCTTTCTACCAAGCAATACCGATGCTATTTCAACGAGGGACCTAATGGGCCTCCATTCAAT GATGAGTCTCACTGTTCCGGCCCAGGTTCCAATCTGCAAGGTGGAATCACCGCCTCCATGTCCGGGGGTTCTTTC ATCGGGGCCTTGATCTCGGGCTTCGTGACTGATATCTTCGGCCGAAAGTCGGCGATTCAATTGGGAGCTATCGTA TGGATTATCGGAAGTACCCTCTGTTGCGCCGCTCAGAACATCCCTATGTTAATCGTGGGTCGATTCGTCAACGGT CTGTGTGTCGGAATATGCTCAGCCCAAGTTCCTGTGTATGTTGGAGAGCTCGCGCCTCCTCATCTCAGGGGCTTG GTAATGGGTGCTCAGCAATGGGCGATCACATGGGGTGTTTTGATCATGTTCTATATCTCGTACGGCTCATCTTTC CTCACAGGCCCTTTGGCTTTCCGGCTACCTTGGGGTCTTCAAATGATCCCCGCGATTTTCCTCTTCATAGGGTTA TTGTTCACCCCCGAGTCTCCACGATGGTTGGCAAAGAAAGATCGCTGGGAGGAATGTTGTCACATTATCTCTTCT ATCCATGCCAACAACAACCTCGACGAGAACTTTATCCAGATGGAGATCCAACAGCTCAAGGATGCTTGTGAATTA GAGCGCGACAGGACCGACAACAGTTACATCGATCTTTTCCGGCCGCATATGCTTTGGCGCACGCACATTGTCGTC TTTGTCCAGATCTGGTGTCAACTCACTGGAATCAACGCCATTCTCTACTACATTACATATATTTTCGGAATGACA GGCCTCAGTGGCAGCTCCAACTTGGTGGCGTCATCCATCAGCTCCGTGATCAACGTGATTATGACAATCCCCGCA CTCCTCTTCATGGATCGTGTCGGGCGTCGTCCATTACTCATCGGAGGCAGTATTTCTCTCTTCATCTGGTGGACC CTATGTGCTGGCCTAATGGGAGGCTACGGTGTCGCAGCCCCGCCAGGTGGCTTGGACAATATCCCCGAAGAGAGT TGGTTGATCACAGGAGCTCCCGCCAAGGTCGTGATTGCTTGCTCCTATCTCATCGTGGCCTCTTTCGCGCCAACA TGGGGCCCTATTGAGTGGGTGTATCCGTCGGAGCTCTTCCCCCTCCGTCTACGAGGCAAAGCCGCTGCCTTGTCC ACAGCCAGCAACTGGGCGTTCAATTTCGCTCTGAGCTATTTCATTCCGCCTGCTTTTGTCAACATCACTTGGAAG ACTTATATCATTTTTGCAGTCTTCGCCTTCGCTATGACCCTGCACGTCTTCTTCGTTTTCCCTGAGACATCGGGG AGGACACTGGAGGAAGTTGAAGATGCGTTCAAGGGGGTTAAGCTGGCTTGGAATATGGGTGCAGAGAAATTCAAG GATGAAGAGATAACGCTTGAATATGAGCCGAAGCAAGACGAAAGTGAAAAGGCTGTGCACGTTGAGGATACTATA AGATCGACGTGA |
| Gene | >Pro_DTO377G3_2|g2046.t1 ATGATGATTACCAATATTTATGTGATCACAGTCATCGCTGTGATCGGAGGCTCGCTCTTCGGCTTCGATCTGTCT TCGATGTCTGCCATGTGAGAGTTATCTTCGGAGGAAACAAGCGCTTTCTAATCAATGCAGCCTTTCTACCAAGCA ATACCGATGCTATTTCAACGAGGGACCTAATGGGCCTCCATTCAATGATGAGTCTCACTGTTCCGGCCCAGGTTC CAATCTGCAAGGTGGAATCACCGCCTCCATGTCCGGGGGTTCTTTCATCGGGGCCTTGATCTCGGGCTTCGTGAC TGATATCTTCGGCCGAAAGTCGGCGATTCAATTGGGAGCTATCGTATGGTTAGTCATGTTTCAATGCGTTGAGCT GAAAGTAGCTGACGTGATCCACAACTAGGATTATCGGAAGTACCCTCTGTTGCGCCGCTCAGAACATCCCTATGT TAATCGTGGGTCGATTCGTCAACGGTCTGTGTGTCGGAATATGCTCAGCCCAAGTTCCTGTGTATGTTGGAGAGC TCGCGCCTCCTCATCTCAGGGGCTTGGTAATGGGTGCTCAGCAATGGGCGATCACATGGGGTGTTTTGATCATGT TCTATATCTCGTACGGCTCATCTTTCCTCACAGGCCCTTTGGCTTTCCGGCTACCTTGGGGTCTTCAAATGATCC CCGCGATTTTCCTCTTCATAGGGTTATTGTTCACCCCCGAGTCTCCACGATGGTTGGCAAAGAAAGATCGCTGGG AGGAATGTTGTCACATTATCTCTTCTATCCATGCCAACAACAACCTCGACGAGAACTTTATCCAGATGGAGATCC AACAGCTCAAGGATGCTTGTGAATTAGAGCGCGACAGGACCGACAACAGTTACATCGATCTTTTCCGGCCGCATA TGCTTTGGCGCACGCACATTGTCGTCTTTGTCCAGATCTGGTGTCAACTCACTGGAATCAACGCCATTCTCTACT GTGAGCTCCCTCCTGTCCAGTGTGGTGGAATTACCACTAACATCTCTAGACATTACATATATTTTCGGAATGACA GGCCTCAGTGGCAGCTCCAACTTGGTGGCGTCATCCATCAGCTCCGTGATCAACGTGATTATGACAATCCCCGCA CTCCTCTTCATGGATCGTGTCGGGCGTCGTCCATTACTCATCGGAGGCAGTATTTCTCTCTTCATCTGGTGGACC CTATGTGCTGGCCTAATGGGAGGCTACGGTGTCGCAGCCCCGCCAGGTGGCTTGGACAATATCCCCGAAGAGAGT TGGTTGATCACAGGAGCTCCCGCCAAGGTCGTGATTGCTTGCTCCTATCTCATCGTGGCCTCTTTCGCGCCAACA TGGGGCCCTATTGAGTGGGTGTATCCGTCGGAGCTCTTCCCCCTCCGTCTACGAGGCAAAGCCGCTGCCTTGTCC ACAGCCAGCAACTGGGCGTTCAATTTCGCTCTGAGCTATTTCATTCCGCCTGCTTTTGTCAACATCACTTGGAAG ACTTATATCATTTTTGCAGTCTTCGCCTTCGCTATGACCCTGCACGTCTTCTTCGTTTTCCCTGAGACATCGGGG AGGACACTGGAGGAAGTTGAAGATGCGTTCAAGGGGGTTAAGCTGGCTTGGAATATGGGTGCAGAGAAATTCAAG GATGAAGAGATAACGCTTGAATATGAGCCGAAGCAAGACGAAAGTGAAAAGGCTGTGCACGTTGAGGATACTATA AGATCGACGTGA |