© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2044.t1 |
| Gene name | |
| Location | scaffold_02:1524452..1525604 |
| Strand | + |
| Gene length (bp) | 1152 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04733 | Coatomer_E | Coatomer epsilon subunit | 4.5E-58 | 9 | 289 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 100.07 | 59.89 | 140.25 |
| 5d_25C | Five days - 25 degrees Celsius | 69.32 | 39.13 | 99.51 |
| 7d_25C | Seven days - 25 degrees Celsius | 56.74 | 30.87 | 82.61 |
| 10d_25C | Ten days - 25 degrees Celsius | 38.94 | 19.54 | 58.33 |
| 7d_15C | Seven days - 15 degrees Celsius | 76.98 | 42.40 | 111.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 65.52 | 36.37 | 94.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.106607 | no |
| 3d_25C | 7d_25C | 0.011688 | yes |
| 3d_25C | 7d_15C | 0.310548 | no |
| 3d_25C | 7d_30C | 0.059704 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.487538 | no |
| 5d_25C | 7d_15C | 0.746641 | no |
| 5d_25C | 7d_30C | 0.876879 | no |
| 5d_25C | 10d_25C | 0.015268 | yes |
| 7d_25C | 7d_15C | 0.258414 | no |
| 7d_25C | 7d_30C | 0.652739 | no |
| 7d_25C | 10d_25C | 0.154640 | no |
| 7d_15C | 7d_30C | 0.595104 | no |
| 7d_15C | 10d_25C | 0.004045 | yes |
| 7d_30C | 10d_25C | 0.032181 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2044.t1 MDPFSAEGELLNIHSAFHSGQYQNVIDFETAALSPENQLPAQVLRLRAQIALGQFEESLAEPSIEEDSPDLSAVR ALALQSSGKTDAALQLAQELAENYPENNTVQVLAATVLQAQGHSEEALALLSKHQGNLEAVSLIVQIHLVQNRTD LALKEVQAAKRWGQDSLLVNVAESWVGLRVGGDKYQSAFYVFEELASAPGTSAPLSIVGQAIAEIHLGRLPEAEA ALTAALETYPTDVELIANSIVLNVLAGKQTEDLESRLQQVQPAHPLLTDIQEKSEFFDTAAAKFSAKVSS* |
| Coding | >Pro_DTO377G3_2|g2044.t1 ATGGATCCCTTTTCTGCAGAGGGCGAGCTCCTCAACATCCACAGCGCCTTCCACTCAGGCCAATACCAGAATGTG ATTGACTTCGAGACCGCCGCGCTCTCCCCCGAGAACCAGCTCCCCGCTCAAGTCCTCCGACTCCGCGCCCAGATT GCCCTTGGCCAATTCGAAGAAAGCCTCGCCGAGCCCTCCATCGAAGAGGACAGCCCTGACCTCTCCGCCGTCAGG GCCCTGGCACTGCAGTCCTCCGGCAAAACAGACGCTGCCCTGCAGCTCGCACAAGAGCTCGCAGAGAACTACCCC GAAAACAACACGGTGCAGGTTCTTGCTGCTACTGTGCTCCAGGCCCAGGGACACAGCGAGGAGGCGCTGGCGCTG CTGTCCAAGCACCAGGGTAACCTCGAGGCCGTCTCCCTCATTGTCCAGATCCATCTCGTACAAAACCGGACCGAT CTCGCGCTCAAGGAGGTTCAGGCTGCCAAGCGCTGGGGTCAGGATTCGCTGCTGGTCAACGTTGCCGAGTCGTGG GTTGGCTTGAGAGTTGGCGGCGACAAGTACCAGTCTGCTTTCTACGTCTTCGAGGAGCTCGCATCCGCACCCGGT ACCTCCGCACCGCTATCTATCGTTGGTCAGGCCATCGCTGAGATCCACCTGGGTCGTCTTCCTGAGGCTGAGGCT GCCCTCACCGCTGCCCTTGAGACATACCCTACCGACGTGGAGTTGATTGCCAATAGCATTGTTTTGAATGTGTTG GCTGGCAAGCAGACCGAGGACCTGGAGTCCCGGCTACAGCAGGTCCAGCCCGCGCACCCCCTTCTCACCGATATC CAGGAGAAGAGCGAGTTTTTCGATACTGCGGCGGCAAAGTTCTCTGCTAAGGTCTCATCGTAG |
| Transcript | >Pro_DTO377G3_2|g2044.t1 ATGGATCCCTTTTCTGCAGAGGGCGAGCTCCTCAACATCCACAGCGCCTTCCACTCAGGCCAATACCAGAATGTG ATTGACTTCGAGACCGCCGCGCTCTCCCCCGAGAACCAGCTCCCCGCTCAAGTCCTCCGACTCCGCGCCCAGATT GCCCTTGGCCAATTCGAAGAAAGCCTCGCCGAGCCCTCCATCGAAGAGGACAGCCCTGACCTCTCCGCCGTCAGG GCCCTGGCACTGCAGTCCTCCGGCAAAACAGACGCTGCCCTGCAGCTCGCACAAGAGCTCGCAGAGAACTACCCC GAAAACAACACGGTGCAGGTTCTTGCTGCTACTGTGCTCCAGGCCCAGGGACACAGCGAGGAGGCGCTGGCGCTG CTGTCCAAGCACCAGGGTAACCTCGAGGCCGTCTCCCTCATTGTCCAGATCCATCTCGTACAAAACCGGACCGAT CTCGCGCTCAAGGAGGTTCAGGCTGCCAAGCGCTGGGGTCAGGATTCGCTGCTGGTCAACGTTGCCGAGTCGTGG GTTGGCTTGAGAGTTGGCGGCGACAAGTACCAGTCTGCTTTCTACGTCTTCGAGGAGCTCGCATCCGCACCCGGT ACCTCCGCACCGCTATCTATCGTTGGTCAGGCCATCGCTGAGATCCACCTGGGTCGTCTTCCTGAGGCTGAGGCT GCCCTCACCGCTGCCCTTGAGACATACCCTACCGACGTGGAGTTGATTGCCAATAGCATTGTTTTGAATGTGTTG GCTGGCAAGCAGACCGAGGACCTGGAGTCCCGGCTACAGCAGGTCCAGCCCGCGCACCCCCTTCTCACCGATATC CAGGAGAAGAGCGAGTTTTTCGATACTGCGGCGGCAAAGTTCTCTGCTAAGGTCTCATCGTAG |
| Gene | >Pro_DTO377G3_2|g2044.t1 ATGGATCCCTTTTCTGCAGAGGGCGGTACGCATTCCAGTTCTTTCTACAGCTCCGATCAACGCTAACCCAGCTTC CCCGCAGAGCTCCTCAACATCCACAGCGCCTTCCACTCAGGCCAATACCAGAATGTGATTGACTTCGAGACCGCC GCGCTCTCCCCCGAGAACCAGCTCCCCGCTCAAGTCCTCCGACTCCGCGCCCAGATTGCCCTTGGCCAATTCGAA GAAAGCCTCGCCGAGCCCTCCATCGAAGAGGACAGCCCTGACCTCTCCGCCGTCAGGGCCCTGGCACTGCAGTCC TCCGGCAAAACAGACGCTGCCCTGCAGCTCGCACAAGAGCTCGCAGAGAACTACCCCGAAAACAACACGGTGCAG GTTCTTGCTGCTACTGTGCTCCAGGCCCAGGGACACAGCGAGGAGGCGCTGGCGCTGCTGTCCAAGCACCAGGGT AACCTCGAGGCGTGAGTTACCCCGTCGCAAGTAGGCCGCAAATATAACGGAGCATGTTGGTCTGACATTCTATCT CTCCTAGCGTCTCCCTCATTGTCCAGATCCATCTCGTACAAAACCGGACCGATCTCGCGCTCAAGGAGGTTCAGG CTGCCAAGCGCTGGGGTCAGGATTCGCTGCTGGTCAACGTTGCCGAGTCGTGGGTTGGCTTGAGAGTTGTATGTT GATGATAAACCCATAATCTTCTGGTTGATGGTTGATGGTCTATGAGTGCTGATTTGTGTTTCTGTACAGGGCGGC GACAAGTACCAGTCTGCTTTCTACGTCTTCGAGGAGCTCGCATCCGCACCCGGTACCTCCGCACCGCTATCTATC GTTGGTCAGGCCATCGCTGAGATCCACCTGGGTCGTCTTCCTGAGGCTGAGGCTGCCCTCACCGCTGCCCTTGAG ACATACCCTACCGACGTGGAGTTGATTGCCAATAGCATTGTTTTGAATGTGTTGGCTGGCAAGCAGACCGAGGAC CTGGAGTCGTATGTCATCCTATCGGAGAAGAAGATAGTGAACTCGATGCTAACTTTTATCTTGTCTAGCCGGCTA CAGCAGGTCCAGCCCGCGCACCCCCTTCTCACCGATATCCAGGAGAAGAGCGAGTTTTTCGATACTGCGGCGGCA AAGTTCTCTGCTAAGGTCTCATCGTAG |