© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2031.t1 |
| Gene name | |
| Location | scaffold_02:1478868..1480033 |
| Strand | + |
| Gene length (bp) | 1165 |
| Transcript length (bp) | 1077 |
| Coding sequence length (bp) | 1077 |
| Protein length (aa) | 359 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | 4.0E-03 | 22 | 53 |
| PF00400 | WD40 | WD domain, G-beta repeat | 4.5E-02 | 67 | 95 |
| PF00400 | WD40 | WD domain, G-beta repeat | 3.5E-02 | 114 | 147 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.2E-01 | 243 | 286 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 4 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.22 | 4.28 | 18.15 |
| 5d_25C | Five days - 25 degrees Celsius | 13.21 | 5.36 | 21.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.86 | 6.69 | 25.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.43 | 9.39 | 31.46 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.33 | 11.88 | 40.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.04 | 12.80 | 39.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.700094 | no |
| 3d_25C | 7d_25C | 0.346162 | no |
| 3d_25C | 7d_15C | 0.005626 | yes |
| 3d_25C | 7d_30C | 0.005626 | yes |
| 3d_25C | 10d_25C | 0.056162 | no |
| 5d_25C | 7d_25C | 0.656683 | no |
| 5d_25C | 7d_15C | 0.021921 | yes |
| 5d_25C | 7d_30C | 0.019886 | yes |
| 5d_25C | 10d_25C | 0.177209 | no |
| 7d_25C | 7d_15C | 0.108807 | no |
| 7d_25C | 7d_30C | 0.101883 | no |
| 7d_25C | 10d_25C | 0.489275 | no |
| 7d_15C | 7d_30C | 0.982373 | no |
| 7d_15C | 10d_25C | 0.471672 | no |
| 7d_30C | 10d_25C | 0.465254 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 1252 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2031.t1 MAFNAQNTTNQGDISQDAILDHPPEDSISELAWSPIANHLAVSSWDHNVRIYDVTRSVKGEGKAMFSFGGPVLSC AWSPDGSKVVGAGADGSARLVDLASGNPTTAQAQQVAQHDAPVRSVRMVQIPNSQVPIVVTGSWDRTVKYWDLRQ STPLGVLECSERVYAMEICQGQLLVALADRQISLVNLNQPTSVFKTLQSPLKHQTRTICWIPDGSGFAVGSIEGR CGVNYIDDAKKQSNFTFRCQRTPKDNDPKNQLVYSVNAVSFHPRYHTFSTAGSDGTYCFWDKDAHHRLKSFPAVG HSITSTAFNLDGSIFAYAIGYDWSKGYAYNTRDYPTKIALHPVSDAECKPKATMTTRR* |
| Coding | >Pro_DTO377G3_2|g2031.t1 ATGGCCTTCAACGCCCAGAATACCACTAACCAAGGCGATATCTCGCAAGATGCCATCCTCGACCACCCCCCCGAG GACAGTATCTCCGAACTGGCCTGGTCGCCTATCGCCAACCATCTCGCCGTATCGTCCTGGGACCATAATGTACGG ATTTACGATGTGACGCGCTCGGTTAAGGGCGAAGGCAAGGCGATGTTCTCCTTCGGCGGGCCCGTCCTGAGTTGT GCCTGGTCGCCCGACGGCTCCAAGGTTGTGGGCGCGGGGGCCGACGGGTCGGCGCGTCTCGTAGATCTAGCAAGC GGCAACCCCACTACAGCTCAGGCCCAGCAGGTGGCGCAACATGATGCCCCCGTGCGCAGCGTGCGCATGGTCCAA ATTCCCAACAGTCAGGTGCCGATCGTCGTCACCGGGTCGTGGGATCGCACCGTCAAGTACTGGGACCTACGCCAG TCCACCCCGCTTGGCGTCCTGGAATGTTCCGAGCGAGTGTATGCCATGGAGATCTGCCAGGGCCAATTGCTGGTC GCCTTGGCCGATCGCCAGATCAGCCTCGTCAATCTCAACCAGCCCACTTCCGTCTTCAAAACCCTACAGAGTCCG TTGAAGCATCAGACGAGGACCATCTGCTGGATCCCCGACGGGTCCGGCTTTGCGGTCGGCAGCATTGAAGGCCGA TGCGGCGTCAACTATATTGACGACGCCAAAAAGCAATCAAACTTTACCTTCCGATGTCAACGCACCCCCAAAGAC AACGACCCCAAGAACCAACTGGTTTATTCGGTCAATGCAGTATCCTTCCATCCGCGCTACCACACCTTCAGCACT GCCGGCTCCGATGGCACCTACTGTTTCTGGGACAAAGACGCCCACCATCGGCTCAAGTCGTTCCCTGCCGTCGGA CACAGCATCACCTCTACCGCCTTTAACCTCGACGGCAGTATCTTCGCCTATGCGATCGGCTATGACTGGAGTAAA GGCTACGCCTACAACACGCGCGATTATCCGACTAAGATCGCCTTGCACCCGGTGTCCGACGCCGAATGTAAGCCG AAGGCGACCATGACCACTCGGAGGTGA |
| Transcript | >Pro_DTO377G3_2|g2031.t1 ATGGCCTTCAACGCCCAGAATACCACTAACCAAGGCGATATCTCGCAAGATGCCATCCTCGACCACCCCCCCGAG GACAGTATCTCCGAACTGGCCTGGTCGCCTATCGCCAACCATCTCGCCGTATCGTCCTGGGACCATAATGTACGG ATTTACGATGTGACGCGCTCGGTTAAGGGCGAAGGCAAGGCGATGTTCTCCTTCGGCGGGCCCGTCCTGAGTTGT GCCTGGTCGCCCGACGGCTCCAAGGTTGTGGGCGCGGGGGCCGACGGGTCGGCGCGTCTCGTAGATCTAGCAAGC GGCAACCCCACTACAGCTCAGGCCCAGCAGGTGGCGCAACATGATGCCCCCGTGCGCAGCGTGCGCATGGTCCAA ATTCCCAACAGTCAGGTGCCGATCGTCGTCACCGGGTCGTGGGATCGCACCGTCAAGTACTGGGACCTACGCCAG TCCACCCCGCTTGGCGTCCTGGAATGTTCCGAGCGAGTGTATGCCATGGAGATCTGCCAGGGCCAATTGCTGGTC GCCTTGGCCGATCGCCAGATCAGCCTCGTCAATCTCAACCAGCCCACTTCCGTCTTCAAAACCCTACAGAGTCCG TTGAAGCATCAGACGAGGACCATCTGCTGGATCCCCGACGGGTCCGGCTTTGCGGTCGGCAGCATTGAAGGCCGA TGCGGCGTCAACTATATTGACGACGCCAAAAAGCAATCAAACTTTACCTTCCGATGTCAACGCACCCCCAAAGAC AACGACCCCAAGAACCAACTGGTTTATTCGGTCAATGCAGTATCCTTCCATCCGCGCTACCACACCTTCAGCACT GCCGGCTCCGATGGCACCTACTGTTTCTGGGACAAAGACGCCCACCATCGGCTCAAGTCGTTCCCTGCCGTCGGA CACAGCATCACCTCTACCGCCTTTAACCTCGACGGCAGTATCTTCGCCTATGCGATCGGCTATGACTGGAGTAAA GGCTACGCCTACAACACGCGCGATTATCCGACTAAGATCGCCTTGCACCCGGTGTCCGACGCCGAATGTAAGCCG AAGGCGACCATGACCACTCGGAGGTGA |
| Gene | >Pro_DTO377G3_2|g2031.t1 ATGGCCTTCAACGCCCAGAATACCACTAACCAAGGCGATATCTCGCAAGATGCCATCCTCGACCACCCCCCCGAG GACAGTATCTCCGAACTGGCCTGGTCGCCTATCGCCAACCATCTCGCCGTATCGTCCTGGGACCATAATGTACGG ATTTACGATGTGACGCGCTCGGTTAAGGGCGAAGGCAAGGCGATGTTCTCCTTCGGCGGGCCCGTCCTGAGTTGT GCCTGGTCGCCCGACGGCTCCAAGGTTGTGGGCGCGGGGGCCGACGGGTCGGCGCGTCTCGTAGATCTAGCAAGC GGCAACCCCACTACAGCTCAGGCCCAGCAGGTGGCGCAACATGATGCCCCCGTGCGCAGCGTGCGCATGGTCCAA ATTCCCAACAGTCAGGTGCCGATCGTCGTCACCGGGTCGTGGGATCGCACCGTCAAGTACTGGGACCTACGCCAG TCCACCCCGCTTGGCGTCCTGGAATGTTCCGAGCGAGTGTATGCCATGGAGATCTGCCAGGGCCAATTGCTGGTC GCCTTGGCCGATCGCCAGATCAGCCTCGTCAATCTCAACCAGCCCACTTCCGTCTTCAAAACCCTACAGAGTCCG TTGAAGCATCAGACGAGGACCATCTGCTGGATCCCCGACGGGTCCGGCTTTGCGGTCGGCAGCATTGAAGGCCGA TGCGGCGTCAACTATATTGACGACGCCAAAAAGCAGTGAGTAGCTAACCCGCACCCATATAGTATCCCCGATAGA TTAATTTCCAGGGAGAAAGAATTGCCCTGATGGAGATGTGACCCGCAGATCAAACTTTACCTTCCGATGTCAACG CACCCCCAAAGACAACGACCCCAAGAACCAACTGGTTTATTCGGTCAATGCAGTATCCTTCCATCCGCGCTACCA CACCTTCAGCACTGCCGGCTCCGATGGCACCTACTGTTTCTGGGACAAAGACGCCCACCATCGGCTCAAGTCGTT CCCTGCCGTCGGACACAGCATCACCTCTACCGCCTTTAACCTCGACGGCAGTATCTTCGCCTATGCGATCGGCTA TGACTGGAGTAAAGGCTACGCCTACAACACGCGCGATTATCCGACTAAGATCGCCTTGCACCCGGTGTCCGACGC CGAATGTAAGCCGAAGGCGACCATGACCACTCGGAGGTGA |