Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2028.t1
Gene name
Locationscaffold_02:1465662..1466640
Strand+
Gene length (bp)978
Transcript length (bp)978
Coding sequence length (bp)978
Protein length (aa) 326

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 45 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 25.77 12.21 39.33
5d_25C Five days - 25 degrees Celsius 32.07 16.05 48.10
7d_25C Seven days - 25 degrees Celsius 39.34 20.60 58.07
10d_25C Ten days - 25 degrees Celsius 38.60 20.11 57.08
7d_15C Seven days - 15 degrees Celsius 87.49 44.20 130.77
7d_30C Seven days - 30 degrees Celsius 83.54 48.72 118.36

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.516058 no
3d_25C 7d_25C 0.122215 no
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.146998 no
5d_25C 7d_25C 0.529821 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.000700 yes
5d_25C 10d_25C 0.572797 no
7d_25C 7d_15C 0.001278 yes
7d_25C 7d_30C 0.001278 yes
7d_25C 10d_25C 0.964887 no
7d_15C 7d_30C 0.907560 no
7d_15C 10d_25C 0.001278 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2028.t1
MTTTASTQVQEEYKSLTADLPPPPRGDITTPVLFSHEFDQGTNGYMFIKNPPPAGVPYTNIRPAPSIVTVEDLRG
KEDSVTLDHDSLQILQGLTDMPRSPAVDWDSDTSIETTFYPAVEAAIKKAISRSHTVHIFRHGIRHSKNWPVPYN
PPAMIAHLDQTGPAAVNRVLRHMGPVDGPRLLQGRYRIVHFWTPLNGPVYTCPVAIASSATVKDEDIRIFISHLG
GVGGLGMPLGRPVAKPDPAEQYREDFGAPRYAEGQRWFYLSGISQDEAMLIQIFDSKALTKGSEVKGGRAVHSAF
RDPRTPQGAPDRWSIEVSCLVFSDE*
Coding >Pro_DTO377G3_2|g2028.t1
ATGACCACCACGGCCAGTACACAGGTGCAGGAGGAGTACAAGTCCCTCACCGCAGATCTCCCACCCCCGCCGAGG
GGCGACATCACCACGCCGGTCCTGTTTTCCCATGAATTTGACCAAGGCACCAATGGATACATGTTCATCAAGAAC
CCACCGCCAGCCGGTGTGCCGTACACCAACATCCGCCCTGCCCCCTCCATAGTGACGGTGGAAGACCTCCGTGGC
AAGGAAGACAGCGTCACCCTCGACCATGACTCGCTGCAGATCCTGCAGGGACTGACAGACATGCCACGCAGCCCA
GCGGTTGACTGGGACTCAGACACCAGCATCGAAACCACCTTCTACCCGGCGGTCGAGGCGGCCATCAAGAAAGCA
ATCTCGAGGTCACACACCGTGCACATCTTCCGCCACGGCATCCGGCACTCGAAGAACTGGCCTGTCCCGTACAAT
CCACCGGCCATGATCGCCCATCTAGACCAAACCGGTCCCGCGGCAGTCAACCGAGTGCTAAGGCACATGGGCCCG
GTCGACGGCCCGCGCTTGCTGCAAGGACGGTACCGGATCGTTCATTTCTGGACGCCCCTCAACGGCCCCGTCTAT
ACGTGCCCCGTGGCCATCGCCAGTTCGGCCACTGTCAAGGATGAGGATATTCGCATCTTTATTAGTCATCTCGGT
GGGGTCGGCGGCCTGGGCATGCCCTTGGGCCGGCCCGTGGCAAAGCCGGATCCTGCCGAGCAGTACCGCGAAGAT
TTTGGGGCTCCGCGGTACGCGGAAGGACAGCGATGGTTCTATTTAAGTGGGATCTCACAGGACGAGGCTATGTTA
ATCCAGATCTTTGATTCCAAGGCGTTGACGAAAGGAAGTGAAGTAAAGGGGGGTCGGGCAGTCCATTCGGCCTTC
CGTGACCCCAGGACACCACAGGGTGCTCCCGATCGTTGGAGCATTGAGGTCTCCTGTCTTGTTTTTAGTGACGAG
TGA
Transcript >Pro_DTO377G3_2|g2028.t1
ATGACCACCACGGCCAGTACACAGGTGCAGGAGGAGTACAAGTCCCTCACCGCAGATCTCCCACCCCCGCCGAGG
GGCGACATCACCACGCCGGTCCTGTTTTCCCATGAATTTGACCAAGGCACCAATGGATACATGTTCATCAAGAAC
CCACCGCCAGCCGGTGTGCCGTACACCAACATCCGCCCTGCCCCCTCCATAGTGACGGTGGAAGACCTCCGTGGC
AAGGAAGACAGCGTCACCCTCGACCATGACTCGCTGCAGATCCTGCAGGGACTGACAGACATGCCACGCAGCCCA
GCGGTTGACTGGGACTCAGACACCAGCATCGAAACCACCTTCTACCCGGCGGTCGAGGCGGCCATCAAGAAAGCA
ATCTCGAGGTCACACACCGTGCACATCTTCCGCCACGGCATCCGGCACTCGAAGAACTGGCCTGTCCCGTACAAT
CCACCGGCCATGATCGCCCATCTAGACCAAACCGGTCCCGCGGCAGTCAACCGAGTGCTAAGGCACATGGGCCCG
GTCGACGGCCCGCGCTTGCTGCAAGGACGGTACCGGATCGTTCATTTCTGGACGCCCCTCAACGGCCCCGTCTAT
ACGTGCCCCGTGGCCATCGCCAGTTCGGCCACTGTCAAGGATGAGGATATTCGCATCTTTATTAGTCATCTCGGT
GGGGTCGGCGGCCTGGGCATGCCCTTGGGCCGGCCCGTGGCAAAGCCGGATCCTGCCGAGCAGTACCGCGAAGAT
TTTGGGGCTCCGCGGTACGCGGAAGGACAGCGATGGTTCTATTTAAGTGGGATCTCACAGGACGAGGCTATGTTA
ATCCAGATCTTTGATTCCAAGGCGTTGACGAAAGGAAGTGAAGTAAAGGGGGGTCGGGCAGTCCATTCGGCCTTC
CGTGACCCCAGGACACCACAGGGTGCTCCCGATCGTTGGAGCATTGAGGTCTCCTGTCTTGTTTTTAGTGACGAG
TGA
Gene >Pro_DTO377G3_2|g2028.t1
ATGACCACCACGGCCAGTACACAGGTGCAGGAGGAGTACAAGTCCCTCACCGCAGATCTCCCACCCCCGCCGAGG
GGCGACATCACCACGCCGGTCCTGTTTTCCCATGAATTTGACCAAGGCACCAATGGATACATGTTCATCAAGAAC
CCACCGCCAGCCGGTGTGCCGTACACCAACATCCGCCCTGCCCCCTCCATAGTGACGGTGGAAGACCTCCGTGGC
AAGGAAGACAGCGTCACCCTCGACCATGACTCGCTGCAGATCCTGCAGGGACTGACAGACATGCCACGCAGCCCA
GCGGTTGACTGGGACTCAGACACCAGCATCGAAACCACCTTCTACCCGGCGGTCGAGGCGGCCATCAAGAAAGCA
ATCTCGAGGTCACACACCGTGCACATCTTCCGCCACGGCATCCGGCACTCGAAGAACTGGCCTGTCCCGTACAAT
CCACCGGCCATGATCGCCCATCTAGACCAAACCGGTCCCGCGGCAGTCAACCGAGTGCTAAGGCACATGGGCCCG
GTCGACGGCCCGCGCTTGCTGCAAGGACGGTACCGGATCGTTCATTTCTGGACGCCCCTCAACGGCCCCGTCTAT
ACGTGCCCCGTGGCCATCGCCAGTTCGGCCACTGTCAAGGATGAGGATATTCGCATCTTTATTAGTCATCTCGGT
GGGGTCGGCGGCCTGGGCATGCCCTTGGGCCGGCCCGTGGCAAAGCCGGATCCTGCCGAGCAGTACCGCGAAGAT
TTTGGGGCTCCGCGGTACGCGGAAGGACAGCGATGGTTCTATTTAAGTGGGATCTCACAGGACGAGGCTATGTTA
ATCCAGATCTTTGATTCCAAGGCGTTGACGAAAGGAAGTGAAGTAAAGGGGGGTCGGGCAGTCCATTCGGCCTTC
CGTGACCCCAGGACACCACAGGGTGCTCCCGATCGTTGGAGCATTGAGGTCTCCTGTCTTGTTTTTAGTGACGAG
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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