© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2028.t1 |
| Gene name | |
| Location | scaffold_02:1465662..1466640 |
| Strand | + |
| Gene length (bp) | 978 |
| Transcript length (bp) | 978 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 25.77 | 12.21 | 39.33 |
| 5d_25C | Five days - 25 degrees Celsius | 32.07 | 16.05 | 48.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 39.34 | 20.60 | 58.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 38.60 | 20.11 | 57.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 87.49 | 44.20 | 130.77 |
| 7d_30C | Seven days - 30 degrees Celsius | 83.54 | 48.72 | 118.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.516058 | no |
| 3d_25C | 7d_25C | 0.122215 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.146998 | no |
| 5d_25C | 7d_25C | 0.529821 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.572797 | no |
| 7d_25C | 7d_15C | 0.001278 | yes |
| 7d_25C | 7d_30C | 0.001278 | yes |
| 7d_25C | 10d_25C | 0.964887 | no |
| 7d_15C | 7d_30C | 0.907560 | no |
| 7d_15C | 10d_25C | 0.001278 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2028.t1 MTTTASTQVQEEYKSLTADLPPPPRGDITTPVLFSHEFDQGTNGYMFIKNPPPAGVPYTNIRPAPSIVTVEDLRG KEDSVTLDHDSLQILQGLTDMPRSPAVDWDSDTSIETTFYPAVEAAIKKAISRSHTVHIFRHGIRHSKNWPVPYN PPAMIAHLDQTGPAAVNRVLRHMGPVDGPRLLQGRYRIVHFWTPLNGPVYTCPVAIASSATVKDEDIRIFISHLG GVGGLGMPLGRPVAKPDPAEQYREDFGAPRYAEGQRWFYLSGISQDEAMLIQIFDSKALTKGSEVKGGRAVHSAF RDPRTPQGAPDRWSIEVSCLVFSDE* |
| Coding | >Pro_DTO377G3_2|g2028.t1 ATGACCACCACGGCCAGTACACAGGTGCAGGAGGAGTACAAGTCCCTCACCGCAGATCTCCCACCCCCGCCGAGG GGCGACATCACCACGCCGGTCCTGTTTTCCCATGAATTTGACCAAGGCACCAATGGATACATGTTCATCAAGAAC CCACCGCCAGCCGGTGTGCCGTACACCAACATCCGCCCTGCCCCCTCCATAGTGACGGTGGAAGACCTCCGTGGC AAGGAAGACAGCGTCACCCTCGACCATGACTCGCTGCAGATCCTGCAGGGACTGACAGACATGCCACGCAGCCCA GCGGTTGACTGGGACTCAGACACCAGCATCGAAACCACCTTCTACCCGGCGGTCGAGGCGGCCATCAAGAAAGCA ATCTCGAGGTCACACACCGTGCACATCTTCCGCCACGGCATCCGGCACTCGAAGAACTGGCCTGTCCCGTACAAT CCACCGGCCATGATCGCCCATCTAGACCAAACCGGTCCCGCGGCAGTCAACCGAGTGCTAAGGCACATGGGCCCG GTCGACGGCCCGCGCTTGCTGCAAGGACGGTACCGGATCGTTCATTTCTGGACGCCCCTCAACGGCCCCGTCTAT ACGTGCCCCGTGGCCATCGCCAGTTCGGCCACTGTCAAGGATGAGGATATTCGCATCTTTATTAGTCATCTCGGT GGGGTCGGCGGCCTGGGCATGCCCTTGGGCCGGCCCGTGGCAAAGCCGGATCCTGCCGAGCAGTACCGCGAAGAT TTTGGGGCTCCGCGGTACGCGGAAGGACAGCGATGGTTCTATTTAAGTGGGATCTCACAGGACGAGGCTATGTTA ATCCAGATCTTTGATTCCAAGGCGTTGACGAAAGGAAGTGAAGTAAAGGGGGGTCGGGCAGTCCATTCGGCCTTC CGTGACCCCAGGACACCACAGGGTGCTCCCGATCGTTGGAGCATTGAGGTCTCCTGTCTTGTTTTTAGTGACGAG TGA |
| Transcript | >Pro_DTO377G3_2|g2028.t1 ATGACCACCACGGCCAGTACACAGGTGCAGGAGGAGTACAAGTCCCTCACCGCAGATCTCCCACCCCCGCCGAGG GGCGACATCACCACGCCGGTCCTGTTTTCCCATGAATTTGACCAAGGCACCAATGGATACATGTTCATCAAGAAC CCACCGCCAGCCGGTGTGCCGTACACCAACATCCGCCCTGCCCCCTCCATAGTGACGGTGGAAGACCTCCGTGGC AAGGAAGACAGCGTCACCCTCGACCATGACTCGCTGCAGATCCTGCAGGGACTGACAGACATGCCACGCAGCCCA GCGGTTGACTGGGACTCAGACACCAGCATCGAAACCACCTTCTACCCGGCGGTCGAGGCGGCCATCAAGAAAGCA ATCTCGAGGTCACACACCGTGCACATCTTCCGCCACGGCATCCGGCACTCGAAGAACTGGCCTGTCCCGTACAAT CCACCGGCCATGATCGCCCATCTAGACCAAACCGGTCCCGCGGCAGTCAACCGAGTGCTAAGGCACATGGGCCCG GTCGACGGCCCGCGCTTGCTGCAAGGACGGTACCGGATCGTTCATTTCTGGACGCCCCTCAACGGCCCCGTCTAT ACGTGCCCCGTGGCCATCGCCAGTTCGGCCACTGTCAAGGATGAGGATATTCGCATCTTTATTAGTCATCTCGGT GGGGTCGGCGGCCTGGGCATGCCCTTGGGCCGGCCCGTGGCAAAGCCGGATCCTGCCGAGCAGTACCGCGAAGAT TTTGGGGCTCCGCGGTACGCGGAAGGACAGCGATGGTTCTATTTAAGTGGGATCTCACAGGACGAGGCTATGTTA ATCCAGATCTTTGATTCCAAGGCGTTGACGAAAGGAAGTGAAGTAAAGGGGGGTCGGGCAGTCCATTCGGCCTTC CGTGACCCCAGGACACCACAGGGTGCTCCCGATCGTTGGAGCATTGAGGTCTCCTGTCTTGTTTTTAGTGACGAG TGA |
| Gene | >Pro_DTO377G3_2|g2028.t1 ATGACCACCACGGCCAGTACACAGGTGCAGGAGGAGTACAAGTCCCTCACCGCAGATCTCCCACCCCCGCCGAGG GGCGACATCACCACGCCGGTCCTGTTTTCCCATGAATTTGACCAAGGCACCAATGGATACATGTTCATCAAGAAC CCACCGCCAGCCGGTGTGCCGTACACCAACATCCGCCCTGCCCCCTCCATAGTGACGGTGGAAGACCTCCGTGGC AAGGAAGACAGCGTCACCCTCGACCATGACTCGCTGCAGATCCTGCAGGGACTGACAGACATGCCACGCAGCCCA GCGGTTGACTGGGACTCAGACACCAGCATCGAAACCACCTTCTACCCGGCGGTCGAGGCGGCCATCAAGAAAGCA ATCTCGAGGTCACACACCGTGCACATCTTCCGCCACGGCATCCGGCACTCGAAGAACTGGCCTGTCCCGTACAAT CCACCGGCCATGATCGCCCATCTAGACCAAACCGGTCCCGCGGCAGTCAACCGAGTGCTAAGGCACATGGGCCCG GTCGACGGCCCGCGCTTGCTGCAAGGACGGTACCGGATCGTTCATTTCTGGACGCCCCTCAACGGCCCCGTCTAT ACGTGCCCCGTGGCCATCGCCAGTTCGGCCACTGTCAAGGATGAGGATATTCGCATCTTTATTAGTCATCTCGGT GGGGTCGGCGGCCTGGGCATGCCCTTGGGCCGGCCCGTGGCAAAGCCGGATCCTGCCGAGCAGTACCGCGAAGAT TTTGGGGCTCCGCGGTACGCGGAAGGACAGCGATGGTTCTATTTAAGTGGGATCTCACAGGACGAGGCTATGTTA ATCCAGATCTTTGATTCCAAGGCGTTGACGAAAGGAAGTGAAGTAAAGGGGGGTCGGGCAGTCCATTCGGCCTTC CGTGACCCCAGGACACCACAGGGTGCTCCCGATCGTTGGAGCATTGAGGTCTCCTGTCTTGTTTTTAGTGACGAG TGA |