© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2018.t1 |
| Gene name | |
| Location | scaffold_02:1434529..1435173 |
| Strand | + |
| Gene length (bp) | 644 |
| Transcript length (bp) | 276 |
| Coding sequence length (bp) | 276 |
| Protein length (aa) | 92 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04418 | DUF543 | Domain of unknown function (DUF543) | 3.1E-28 | 11 | 79 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0061617 | MICOS complex | Yes |
| GO:0005743 | mitochondrial inner membrane | Yes |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0016020 | membrane | No |
| GO:0031966 | mitochondrial membrane | No |
| GO:0032991 | protein-containing complex | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0098796 | membrane protein complex | No |
| GO:0019866 | organelle inner membrane | No |
| GO:0031090 | organelle membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 838.03 | 501.86 | 1174.21 |
| 5d_25C | Five days - 25 degrees Celsius | 596.69 | 340.61 | 852.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 467.81 | 255.36 | 680.27 |
| 10d_25C | Ten days - 25 degrees Celsius | 401.25 | 213.19 | 589.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 726.64 | 427.28 | 1025.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 418.48 | 224.68 | 612.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.155898 | no |
| 3d_25C | 7d_25C | 0.007091 | yes |
| 3d_25C | 7d_15C | 0.608056 | no |
| 3d_25C | 7d_30C | 0.002297 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.373506 | no |
| 5d_25C | 7d_15C | 0.465099 | no |
| 5d_25C | 7d_30C | 0.159310 | no |
| 5d_25C | 10d_25C | 0.110283 | no |
| 7d_25C | 7d_15C | 0.061799 | no |
| 7d_25C | 7d_30C | 0.743083 | no |
| 7d_25C | 10d_25C | 0.624463 | no |
| 7d_15C | 7d_30C | 0.018034 | yes |
| 7d_15C | 10d_25C | 0.008133 | yes |
| 7d_30C | 10d_25C | 0.914366 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2018.t1 MAESSESGPIARATKPVSEALLNEKWDRAISSVIIKSSLGLSFGVVFSVLLFKRKAWPAWIGLGFGAGRAWEEAD ASFRRGDSPIRDALRR* |
| Coding | >Pro_DTO377G3_2|g2018.t1 ATGGCTGAATCCAGTGAATCCGGGCCGATCGCGCGAGCCACCAAGCCCGTCAGCGAAGCTTTGCTTAACGAGAAG TGGGACCGCGCCATCTCCTCTGTGATCATCAAGTCCTCCCTCGGTCTGTCTTTCGGTGTTGTCTTCTCGGTGCTG CTCTTCAAGCGGAAGGCTTGGCCCGCGTGGATTGGTCTCGGCTTCGGTGCCGGACGTGCTTGGGAAGAGGCTGAT GCCTCCTTCCGCCGTGGTGACTCCCCTATCAGAGATGCCCTCCGCCGTTAA |
| Transcript | >Pro_DTO377G3_2|g2018.t1 ATGGCTGAATCCAGTGAATCCGGGCCGATCGCGCGAGCCACCAAGCCCGTCAGCGAAGCTTTGCTTAACGAGAAG TGGGACCGCGCCATCTCCTCTGTGATCATCAAGTCCTCCCTCGGTCTGTCTTTCGGTGTTGTCTTCTCGGTGCTG CTCTTCAAGCGGAAGGCTTGGCCCGCGTGGATTGGTCTCGGCTTCGGTGCCGGACGTGCTTGGGAAGAGGCTGAT GCCTCCTTCCGCCGTGGTGACTCCCCTATCAGAGATGCCCTCCGCCGTTAA |
| Gene | >Pro_DTO377G3_2|g2018.t1 ATGGCTGAATCCAGTGAATCCGGGCCGATCGCGCGAGCCACCAAGCCCGTCAGCGAAGCTTTGCTTAACGAGAAG GTATGAGCTAGCTGGGATCTTCAAATGGGGAAGTTGCAATATAGAATCATACCATTGATATATATGACAATTGTC TCGGTCTGGAAGGAAACATGGGAGAACCCGTTGGCTAACCTTTTAACGTCATATAATTAGTGGGACCGCGCCATC TCCTCTGTGATCATCAAGTCCTCCCTCGGTCTGTCTTTCGGTGTTGTCTTCTCGGTGCTGCTCTTCAAGCGGAAG GCTTGGCCCGCGTGGATTGGTCTCGGCTTCGGTGCCGGACGTGCTTGGGAAGAGGCTGATGGTACGTTCATCTCT CTAATTCATTCGGTTCACGGGCATTTAGAGGGGCATTTAGTGAAGTTGGAGCTTCGGGTCACTATAAGATAAGCA CACTTGAGCTTGGGCAGAGGCTGTATGCTGTAATTTTTTCAGCATCGAGCTTCGTAGGCCCTTCAACAGTGACCC GACTATCCGCTTTTCTCCGAGCCTACCTATCTCCAAGATCTAAGAATGACTGAGCTAACTTGTACTTAGCCTCCT TCCGCCGTGGTGACTCCCCTATCAGAGATGCCCTCCGCCGTTAA |