© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2007.t1 |
| Gene name | |
| Location | scaffold_02:1407597..1408080 |
| Strand | + |
| Gene length (bp) | 483 |
| Transcript length (bp) | 483 |
| Coding sequence length (bp) | 483 |
| Protein length (aa) | 161 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 22 | 44 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.16 | 0.0 | 2.94 |
| 5d_25C | Five days - 25 degrees Celsius | 0.40 | 0.0 | 1.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.01 | 0.0 | 4.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.73 | 0.0 | 1.77 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.72 | 0.0 | 1.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.17 | 0.0 | 2.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.385694 | no |
| 3d_25C | 7d_25C | 0.575028 | no |
| 3d_25C | 7d_15C | 0.717430 | no |
| 3d_25C | 7d_30C | 0.977927 | no |
| 3d_25C | 10d_25C | 0.727062 | no |
| 5d_25C | 7d_25C | 0.201552 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.436602 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.389091 | no |
| 7d_25C | 7d_30C | 0.627916 | no |
| 7d_25C | 10d_25C | 0.396456 | no |
| 7d_15C | 7d_30C | 0.755913 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.764745 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2007.t1 MNAVEQGYNYLSCDLLHSTTKWFLPVTSLVSFSLLTLILLHRYIKYRRMRQAHIISTSGFKEKNQDVWLQSTAME KGNILSPGSHPSACDILQPLSRTSLLPSSGALAARAREQQSGSAASSMASSPDCEVQKHIESTQQMCDEDAGGVR TWKRLVVEYR* |
| Coding | >Pro_DTO377G3_2|g2007.t1 ATGAATGCTGTGGAACAAGGATACAACTACCTATCTTGTGACCTCCTACATTCGACCACAAAGTGGTTTCTACCA GTGACCAGCCTGGTCAGCTTTTCACTTCTCACTCTCATCCTCCTCCACCGATATATCAAATATCGTCGTATGAGA CAAGCACACATAATCTCTACCTCTGGATTCAAAGAAAAGAATCAAGACGTCTGGCTTCAATCTACTGCCATGGAA AAAGGAAACATCCTCTCACCGGGCTCGCACCCATCGGCATGCGATATCCTGCAACCTTTATCCCGTACAAGCCTC CTGCCAAGCAGTGGAGCCCTCGCTGCACGGGCCCGAGAGCAGCAAAGTGGAAGTGCTGCATCTTCGATGGCTTCC TCGCCTGACTGCGAGGTGCAAAAACACATTGAATCAACTCAGCAAATGTGCGACGAGGATGCCGGGGGTGTGCGC ACTTGGAAACGTCTTGTCGTTGAGTATCGATAG |
| Transcript | >Pro_DTO377G3_2|g2007.t1 ATGAATGCTGTGGAACAAGGATACAACTACCTATCTTGTGACCTCCTACATTCGACCACAAAGTGGTTTCTACCA GTGACCAGCCTGGTCAGCTTTTCACTTCTCACTCTCATCCTCCTCCACCGATATATCAAATATCGTCGTATGAGA CAAGCACACATAATCTCTACCTCTGGATTCAAAGAAAAGAATCAAGACGTCTGGCTTCAATCTACTGCCATGGAA AAAGGAAACATCCTCTCACCGGGCTCGCACCCATCGGCATGCGATATCCTGCAACCTTTATCCCGTACAAGCCTC CTGCCAAGCAGTGGAGCCCTCGCTGCACGGGCCCGAGAGCAGCAAAGTGGAAGTGCTGCATCTTCGATGGCTTCC TCGCCTGACTGCGAGGTGCAAAAACACATTGAATCAACTCAGCAAATGTGCGACGAGGATGCCGGGGGTGTGCGC ACTTGGAAACGTCTTGTCGTTGAGTATCGATAG |
| Gene | >Pro_DTO377G3_2|g2007.t1 ATGAATGCTGTGGAACAAGGATACAACTACCTATCTTGTGACCTCCTACATTCGACCACAAAGTGGTTTCTACCA GTGACCAGCCTGGTCAGCTTTTCACTTCTCACTCTCATCCTCCTCCACCGATATATCAAATATCGTCGTATGAGA CAAGCACACATAATCTCTACCTCTGGATTCAAAGAAAAGAATCAAGACGTCTGGCTTCAATCTACTGCCATGGAA AAAGGAAACATCCTCTCACCGGGCTCGCACCCATCGGCATGCGATATCCTGCAACCTTTATCCCGTACAAGCCTC CTGCCAAGCAGTGGAGCCCTCGCTGCACGGGCCCGAGAGCAGCAAAGTGGAAGTGCTGCATCTTCGATGGCTTCC TCGCCTGACTGCGAGGTGCAAAAACACATTGAATCAACTCAGCAAATGTGCGACGAGGATGCCGGGGGTGTGCGC ACTTGGAAACGTCTTGTCGTTGAGTATCGATAG |