Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2007.t1
Gene name
Locationscaffold_02:1407597..1408080
Strand+
Gene length (bp)483
Transcript length (bp)483
Coding sequence length (bp)483
Protein length (aa) 161

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 22 44 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 1.16 0.0 2.94
5d_25C Five days - 25 degrees Celsius 0.40 0.0 1.13
7d_25C Seven days - 25 degrees Celsius 2.01 0.0 4.75
10d_25C Ten days - 25 degrees Celsius 0.73 0.0 1.77
7d_15C Seven days - 15 degrees Celsius 0.72 0.0 1.76
7d_30C Seven days - 30 degrees Celsius 1.17 0.0 2.77

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.385694 no
3d_25C 7d_25C 0.575028 no
3d_25C 7d_15C 0.717430 no
3d_25C 7d_30C 0.977927 no
3d_25C 10d_25C 0.727062 no
5d_25C 7d_25C 0.201552 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 0.436602 no
5d_25C 10d_25C 1.000000 no
7d_25C 7d_15C 0.389091 no
7d_25C 7d_30C 0.627916 no
7d_25C 10d_25C 0.396456 no
7d_15C 7d_30C 0.755913 no
7d_15C 10d_25C 1.000000 no
7d_30C 10d_25C 0.764745 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2007.t1
MNAVEQGYNYLSCDLLHSTTKWFLPVTSLVSFSLLTLILLHRYIKYRRMRQAHIISTSGFKEKNQDVWLQSTAME
KGNILSPGSHPSACDILQPLSRTSLLPSSGALAARAREQQSGSAASSMASSPDCEVQKHIESTQQMCDEDAGGVR
TWKRLVVEYR*
Coding >Pro_DTO377G3_2|g2007.t1
ATGAATGCTGTGGAACAAGGATACAACTACCTATCTTGTGACCTCCTACATTCGACCACAAAGTGGTTTCTACCA
GTGACCAGCCTGGTCAGCTTTTCACTTCTCACTCTCATCCTCCTCCACCGATATATCAAATATCGTCGTATGAGA
CAAGCACACATAATCTCTACCTCTGGATTCAAAGAAAAGAATCAAGACGTCTGGCTTCAATCTACTGCCATGGAA
AAAGGAAACATCCTCTCACCGGGCTCGCACCCATCGGCATGCGATATCCTGCAACCTTTATCCCGTACAAGCCTC
CTGCCAAGCAGTGGAGCCCTCGCTGCACGGGCCCGAGAGCAGCAAAGTGGAAGTGCTGCATCTTCGATGGCTTCC
TCGCCTGACTGCGAGGTGCAAAAACACATTGAATCAACTCAGCAAATGTGCGACGAGGATGCCGGGGGTGTGCGC
ACTTGGAAACGTCTTGTCGTTGAGTATCGATAG
Transcript >Pro_DTO377G3_2|g2007.t1
ATGAATGCTGTGGAACAAGGATACAACTACCTATCTTGTGACCTCCTACATTCGACCACAAAGTGGTTTCTACCA
GTGACCAGCCTGGTCAGCTTTTCACTTCTCACTCTCATCCTCCTCCACCGATATATCAAATATCGTCGTATGAGA
CAAGCACACATAATCTCTACCTCTGGATTCAAAGAAAAGAATCAAGACGTCTGGCTTCAATCTACTGCCATGGAA
AAAGGAAACATCCTCTCACCGGGCTCGCACCCATCGGCATGCGATATCCTGCAACCTTTATCCCGTACAAGCCTC
CTGCCAAGCAGTGGAGCCCTCGCTGCACGGGCCCGAGAGCAGCAAAGTGGAAGTGCTGCATCTTCGATGGCTTCC
TCGCCTGACTGCGAGGTGCAAAAACACATTGAATCAACTCAGCAAATGTGCGACGAGGATGCCGGGGGTGTGCGC
ACTTGGAAACGTCTTGTCGTTGAGTATCGATAG
Gene >Pro_DTO377G3_2|g2007.t1
ATGAATGCTGTGGAACAAGGATACAACTACCTATCTTGTGACCTCCTACATTCGACCACAAAGTGGTTTCTACCA
GTGACCAGCCTGGTCAGCTTTTCACTTCTCACTCTCATCCTCCTCCACCGATATATCAAATATCGTCGTATGAGA
CAAGCACACATAATCTCTACCTCTGGATTCAAAGAAAAGAATCAAGACGTCTGGCTTCAATCTACTGCCATGGAA
AAAGGAAACATCCTCTCACCGGGCTCGCACCCATCGGCATGCGATATCCTGCAACCTTTATCCCGTACAAGCCTC
CTGCCAAGCAGTGGAGCCCTCGCTGCACGGGCCCGAGAGCAGCAAAGTGGAAGTGCTGCATCTTCGATGGCTTCC
TCGCCTGACTGCGAGGTGCAAAAACACATTGAATCAACTCAGCAAATGTGCGACGAGGATGCCGGGGGTGTGCGC
ACTTGGAAACGTCTTGTCGTTGAGTATCGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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