© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1998.t1 |
| Gene name | |
| Location | scaffold_02:1379838..1381194 |
| Strand | - |
| Gene length (bp) | 1356 |
| Transcript length (bp) | 1356 |
| Coding sequence length (bp) | 1356 |
| Protein length (aa) | 452 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11312 | Methyltransf_34 | Putative SAM-dependent methyltransferase | 1.6E-101 | 105 | 449 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.47 | 5.43 | 19.50 |
| 5d_25C | Five days - 25 degrees Celsius | 9.17 | 3.59 | 14.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.46 | 2.70 | 12.22 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.46 | 1.20 | 7.72 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.16 | 3.59 | 14.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.93 | 2.44 | 11.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.400307 | no |
| 3d_25C | 7d_25C | 0.134341 | no |
| 3d_25C | 7d_15C | 0.402439 | no |
| 3d_25C | 7d_30C | 0.075175 | no |
| 3d_25C | 10d_25C | 0.004450 | yes |
| 5d_25C | 7d_25C | 0.639886 | no |
| 5d_25C | 7d_15C | 0.998232 | no |
| 5d_25C | 7d_30C | 0.489793 | no |
| 5d_25C | 10d_25C | 0.056008 | no |
| 7d_25C | 7d_15C | 0.647867 | no |
| 7d_25C | 7d_30C | 0.891804 | no |
| 7d_25C | 10d_25C | 0.203510 | no |
| 7d_15C | 7d_30C | 0.495611 | no |
| 7d_15C | 10d_25C | 0.058634 | no |
| 7d_30C | 10d_25C | 0.292713 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1998.t1 MPHAPRQGNRRRSPGPKAKAQKQKQAPPANKQHANRKAEVEKAKAEAEQQEEEQSSGLNLVSTIPLTLQQLLLDV FKTALLGNPVAESEPASQDTNLTESQSDENKDEPLDIKSLIQTIKGLLYQRDFDSAFTEAGEDLLRAYALRWSAS RSLGYAGLLKGVLTWMKEEEENTRGRARSKNPCTRVVSIGGGAGAEIAALAAAWRDMGSQAQSLEEGIASVSLEN KDMESQDEKKTEEGDQGVSAPSLSVMAVDIGNWADVVDRLSRTITSSDVPFSQTTKYRPPLLSEKVASETFSVSF RRGDVLTLPEEDLKEILLGPSSSSPFTSVLVPIMFTLNELFSTSMPKTTGFLLKMTEILPAGAVLLVVDSPGSYS TLKLGKGPDGEPQERNYPMKFLLDHTLLSVAKGKWECVYTQDSRWWRRDAVRLRYEVGEGAGLEDMRFQMHVYRR L* |
| Coding | >Pro_DTO377G3_2|g1998.t1 ATGCCTCACGCCCCACGTCAGGGAAACCGCAGGAGATCTCCAGGTCCAAAAGCGAAAGCGCAAAAGCAAAAACAA GCGCCACCAGCGAACAAACAGCACGCCAATCGCAAAGCCGAAGTCGAAAAAGCCAAAGCCGAAGCCGAACAACAA GAGGAAGAACAGTCCTCTGGACTTAACCTTGTTAGCACAATTCCTCTTACCCTCCAGCAACTGCTCTTGGACGTA TTCAAAACAGCCCTCCTGGGCAACCCAGTTGCAGAATCGGAACCTGCAAGCCAGGATACCAACCTCACTGAATCG CAATCAGACGAAAATAAAGATGAACCATTAGATATTAAATCTCTCATCCAGACAATCAAGGGACTTCTATATCAG CGCGATTTCGACTCTGCCTTCACCGAGGCAGGCGAGGATCTACTGCGCGCATATGCCCTGCGCTGGAGTGCGTCC CGGTCACTGGGATATGCAGGCCTGTTGAAGGGAGTTTTGACTTGGATGAAAGAGGAGGAGGAAAACACGCGAGGC CGTGCTAGAAGCAAGAATCCCTGCACCCGTGTTGTGTCGATTGGTGGCGGAGCCGGTGCAGAGATCGCTGCTCTT GCAGCTGCGTGGAGAGACATGGGGTCCCAAGCCCAGTCGCTAGAGGAAGGTATTGCCAGCGTGTCTCTTGAAAAC AAAGATATGGAATCTCAAGATGAGAAGAAGACAGAAGAAGGAGATCAAGGAGTCAGCGCACCCAGTCTCTCTGTC ATGGCTGTCGATATCGGAAACTGGGCAGACGTTGTTGACAGGCTTTCACGAACCATCACTTCGTCCGATGTGCCA TTTTCGCAGACAACAAAATATCGTCCCCCCTTGCTCTCAGAGAAAGTGGCCAGTGAAACATTCTCCGTGTCTTTC CGCCGCGGAGATGTCCTGACTCTTCCCGAGGAGGACCTCAAAGAAATTCTCCTCGGCCCTTCCTCGTCTTCTCCT TTCACTTCCGTCCTCGTTCCTATCATGTTCACTTTGAATGAGCTCTTTTCTACCTCCATGCCAAAGACTACCGGT TTTTTGCTCAAAATGACGGAAATCCTTCCTGCTGGTGCGGTGCTTTTGGTTGTTGATAGTCCTGGCAGCTATTCA ACTTTGAAGTTAGGAAAAGGACCGGACGGTGAACCACAAGAGAGGAACTATCCGATGAAGTTCTTGCTTGACCAC ACGCTGCTGTCTGTGGCGAAGGGCAAGTGGGAGTGCGTATACACTCAGGACTCGAGGTGGTGGAGACGGGACGCA GTGCGTCTGCGGTATGAAGTTGGCGAAGGAGCAGGCTTGGAAGACATGCGCTTCCAAATGCACGTGTATCGACGT TTGTAG |
| Transcript | >Pro_DTO377G3_2|g1998.t1 ATGCCTCACGCCCCACGTCAGGGAAACCGCAGGAGATCTCCAGGTCCAAAAGCGAAAGCGCAAAAGCAAAAACAA GCGCCACCAGCGAACAAACAGCACGCCAATCGCAAAGCCGAAGTCGAAAAAGCCAAAGCCGAAGCCGAACAACAA GAGGAAGAACAGTCCTCTGGACTTAACCTTGTTAGCACAATTCCTCTTACCCTCCAGCAACTGCTCTTGGACGTA TTCAAAACAGCCCTCCTGGGCAACCCAGTTGCAGAATCGGAACCTGCAAGCCAGGATACCAACCTCACTGAATCG CAATCAGACGAAAATAAAGATGAACCATTAGATATTAAATCTCTCATCCAGACAATCAAGGGACTTCTATATCAG CGCGATTTCGACTCTGCCTTCACCGAGGCAGGCGAGGATCTACTGCGCGCATATGCCCTGCGCTGGAGTGCGTCC CGGTCACTGGGATATGCAGGCCTGTTGAAGGGAGTTTTGACTTGGATGAAAGAGGAGGAGGAAAACACGCGAGGC CGTGCTAGAAGCAAGAATCCCTGCACCCGTGTTGTGTCGATTGGTGGCGGAGCCGGTGCAGAGATCGCTGCTCTT GCAGCTGCGTGGAGAGACATGGGGTCCCAAGCCCAGTCGCTAGAGGAAGGTATTGCCAGCGTGTCTCTTGAAAAC AAAGATATGGAATCTCAAGATGAGAAGAAGACAGAAGAAGGAGATCAAGGAGTCAGCGCACCCAGTCTCTCTGTC ATGGCTGTCGATATCGGAAACTGGGCAGACGTTGTTGACAGGCTTTCACGAACCATCACTTCGTCCGATGTGCCA TTTTCGCAGACAACAAAATATCGTCCCCCCTTGCTCTCAGAGAAAGTGGCCAGTGAAACATTCTCCGTGTCTTTC CGCCGCGGAGATGTCCTGACTCTTCCCGAGGAGGACCTCAAAGAAATTCTCCTCGGCCCTTCCTCGTCTTCTCCT TTCACTTCCGTCCTCGTTCCTATCATGTTCACTTTGAATGAGCTCTTTTCTACCTCCATGCCAAAGACTACCGGT TTTTTGCTCAAAATGACGGAAATCCTTCCTGCTGGTGCGGTGCTTTTGGTTGTTGATAGTCCTGGCAGCTATTCA ACTTTGAAGTTAGGAAAAGGACCGGACGGTGAACCACAAGAGAGGAACTATCCGATGAAGTTCTTGCTTGACCAC ACGCTGCTGTCTGTGGCGAAGGGCAAGTGGGAGTGCGTATACACTCAGGACTCGAGGTGGTGGAGACGGGACGCA GTGCGTCTGCGGTATGAAGTTGGCGAAGGAGCAGGCTTGGAAGACATGCGCTTCCAAATGCACGTGTATCGACGT TTGTAG |
| Gene | >Pro_DTO377G3_2|g1998.t1 ATGCCTCACGCCCCACGTCAGGGAAACCGCAGGAGATCTCCAGGTCCAAAAGCGAAAGCGCAAAAGCAAAAACAA GCGCCACCAGCGAACAAACAGCACGCCAATCGCAAAGCCGAAGTCGAAAAAGCCAAAGCCGAAGCCGAACAACAA GAGGAAGAACAGTCCTCTGGACTTAACCTTGTTAGCACAATTCCTCTTACCCTCCAGCAACTGCTCTTGGACGTA TTCAAAACAGCCCTCCTGGGCAACCCAGTTGCAGAATCGGAACCTGCAAGCCAGGATACCAACCTCACTGAATCG CAATCAGACGAAAATAAAGATGAACCATTAGATATTAAATCTCTCATCCAGACAATCAAGGGACTTCTATATCAG CGCGATTTCGACTCTGCCTTCACCGAGGCAGGCGAGGATCTACTGCGCGCATATGCCCTGCGCTGGAGTGCGTCC CGGTCACTGGGATATGCAGGCCTGTTGAAGGGAGTTTTGACTTGGATGAAAGAGGAGGAGGAAAACACGCGAGGC CGTGCTAGAAGCAAGAATCCCTGCACCCGTGTTGTGTCGATTGGTGGCGGAGCCGGTGCAGAGATCGCTGCTCTT GCAGCTGCGTGGAGAGACATGGGGTCCCAAGCCCAGTCGCTAGAGGAAGGTATTGCCAGCGTGTCTCTTGAAAAC AAAGATATGGAATCTCAAGATGAGAAGAAGACAGAAGAAGGAGATCAAGGAGTCAGCGCACCCAGTCTCTCTGTC ATGGCTGTCGATATCGGAAACTGGGCAGACGTTGTTGACAGGCTTTCACGAACCATCACTTCGTCCGATGTGCCA TTTTCGCAGACAACAAAATATCGTCCCCCCTTGCTCTCAGAGAAAGTGGCCAGTGAAACATTCTCCGTGTCTTTC CGCCGCGGAGATGTCCTGACTCTTCCCGAGGAGGACCTCAAAGAAATTCTCCTCGGCCCTTCCTCGTCTTCTCCT TTCACTTCCGTCCTCGTTCCTATCATGTTCACTTTGAATGAGCTCTTTTCTACCTCCATGCCAAAGACTACCGGT TTTTTGCTCAAAATGACGGAAATCCTTCCTGCTGGTGCGGTGCTTTTGGTTGTTGATAGTCCTGGCAGCTATTCA ACTTTGAAGTTAGGAAAAGGACCGGACGGTGAACCACAAGAGAGGAACTATCCGATGAAGTTCTTGCTTGACCAC ACGCTGCTGTCTGTGGCGAAGGGCAAGTGGGAGTGCGTATACACTCAGGACTCGAGGTGGTGGAGACGGGACGCA GTGCGTCTGCGGTATGAAGTTGGCGAAGGAGCAGGCTTGGAAGACATGCGCTTCCAAATGCACGTGTATCGACGT TTGTAG |