Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1996.t1
Gene name
Locationscaffold_02:1377780..1378455
Strand-
Gene length (bp)675
Transcript length (bp)294
Coding sequence length (bp)294
Protein length (aa) 98

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02939 UcrQ UcrQ family 2.8E-34 16 89

GO

GO Term Description Terminal node
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c Yes
GO:0005750 mitochondrial respiratory chain complex III Yes
GO:0070069 cytochrome complex No
GO:0098803 respiratory chain complex No
GO:1990351 transporter complex No
GO:1902495 transmembrane transporter complex No
GO:0098798 mitochondrial protein-containing complex No
GO:0008150 biological_process No
GO:1990204 oxidoreductase complex No
GO:0005575 cellular_component No
GO:0045333 cellular respiration No
GO:0009060 aerobic respiration No
GO:0008152 metabolic process No
GO:0032991 protein-containing complex No
GO:1902494 catalytic complex No
GO:0006091 generation of precursor metabolites and energy No
GO:0019646 aerobic electron transport chain No
GO:0022904 respiratory electron transport chain No
GO:0045275 respiratory chain complex III No
GO:0022900 electron transport chain No
GO:0098796 membrane protein complex No
GO:0098800 inner mitochondrial membrane protein complex No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No
GO:0015980 energy derivation by oxidation of organic compounds No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

Domain # Start End Length
1 59 77 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 2061.30 1258.14 2864.46
5d_25C Five days - 25 degrees Celsius 1624.39 992.36 2256.42
7d_25C Seven days - 25 degrees Celsius 1415.22 869.09 1961.36
10d_25C Ten days - 25 degrees Celsius 1245.06 764.96 1725.15
7d_15C Seven days - 15 degrees Celsius 1937.19 1183.44 2690.94
7d_30C Seven days - 30 degrees Celsius 1059.59 643.83 1475.35

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.313002 no
3d_25C 7d_25C 0.071362 no
3d_25C 7d_15C 0.839759 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.009124 yes
5d_25C 7d_25C 0.605476 no
5d_25C 7d_15C 0.487538 no
5d_25C 7d_30C 0.040599 yes
5d_25C 10d_25C 0.233629 no
7d_25C 7d_15C 0.148176 no
7d_25C 7d_30C 0.195053 no
7d_25C 10d_25C 0.625714 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.027737 yes
7d_30C 10d_25C 0.526965 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1996.t1
MGHSVDPKNGHYIGNWGEFGCPTPQRIATYSLSPNRQRPMAGAAHAAIFNVFRRFRHQVLYVAPPFIIAYVAMNW
AIERNEFLNSKPGRLLEGDNEE*
Coding >Pro_DTO377G3_2|g1996.t1
ATGGGTCACTCCGTAGATCCCAAGAACGGCCACTACATCGGCAACTGGGGAGAGTTCGGTTGCCCGACTCCCCAG
CGCATCGCCACCTACTCGCTGTCCCCTAACCGTCAGCGTCCCATGGCCGGTGCCGCCCACGCTGCTATCTTCAAC
GTCTTCCGTCGTTTCCGCCACCAGGTTCTTTACGTTGCTCCCCCCTTCATTATCGCATACGTCGCCATGAACTGG
GCCATTGAGCGCAACGAGTTCCTGAACTCCAAGCCCGGCCGTCTTCTCGAGGGTGACAATGAAGAGTAA
Transcript >Pro_DTO377G3_2|g1996.t1
ATGGGTCACTCCGTAGATCCCAAGAACGGCCACTACATCGGCAACTGGGGAGAGTTCGGTTGCCCGACTCCCCAG
CGCATCGCCACCTACTCGCTGTCCCCTAACCGTCAGCGTCCCATGGCCGGTGCCGCCCACGCTGCTATCTTCAAC
GTCTTCCGTCGTTTCCGCCACCAGGTTCTTTACGTTGCTCCCCCCTTCATTATCGCATACGTCGCCATGAACTGG
GCCATTGAGCGCAACGAGTTCCTGAACTCCAAGCCCGGCCGTCTTCTCGAGGGTGACAATGAAGAGTAA
Gene >Pro_DTO377G3_2|g1996.t1
ATGGGTCACTCCGTAGATCCCAAGAACGGCCAGTAAGTCGTTTTGCCCATGCTCCTGGCGTCGTGGATTGAGTAC
CGGCCTCCCGGATGCGTTGGCCGCCCGGCTACACAATTCAAATTCCTAAAGATGCCAATTGGGTCGGGCTTTAAC
AGTCTCTGCGTATTCTGCGTCTCTCATTCAGTTAACTGACAATTTTTACTTCTTATAGCTACATCGGCAACTGGG
GAGAGTTCGGTACGTTCGACAATAACCCTTGAACCTCTATGGACCGGATGCATACGCAGGAGGCCGACCCCTTAT
GCGATATGAAGATCGGATCGATCTAGACATATTCAGAGAAATAAAGGAGATTGCAATTCGAGCGGATCGCTAATA
TCCATGTTACAGGTTGCCCGACTCCCCAGCGCATCGCCACCTACTCGCTGTCCCCTAACCGTCAGCGTCCCATGG
CCGGTGCCGCCCACGCTGCTATCTTCAACGTCTTCCGTCGTTTCCGCCACCAGGTTCTTTACGTTGCTCCCCCCT
TCATTATCGCATACGTCGCCATGAACTGGGCCATTGAGCGGTAAGAATGCCCTTAGGAGCCGCTTCGACTGTGCG
CTAATTTGGTGCTTTAGCAACGAGTTCCTGAACTCCAAGCCCGGCCGTCTTCTCGAGGGTGACAATGAAGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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