© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1996.t1 |
| Gene name | |
| Location | scaffold_02:1377780..1378455 |
| Strand | - |
| Gene length (bp) | 675 |
| Transcript length (bp) | 294 |
| Coding sequence length (bp) | 294 |
| Protein length (aa) | 98 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02939 | UcrQ | UcrQ family | 2.8E-34 | 16 | 89 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | Yes |
| GO:0005750 | mitochondrial respiratory chain complex III | Yes |
| GO:0070069 | cytochrome complex | No |
| GO:0098803 | respiratory chain complex | No |
| GO:1990351 | transporter complex | No |
| GO:1902495 | transmembrane transporter complex | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0008150 | biological_process | No |
| GO:1990204 | oxidoreductase complex | No |
| GO:0005575 | cellular_component | No |
| GO:0045333 | cellular respiration | No |
| GO:0009060 | aerobic respiration | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:1902494 | catalytic complex | No |
| GO:0006091 | generation of precursor metabolites and energy | No |
| GO:0019646 | aerobic electron transport chain | No |
| GO:0022904 | respiratory electron transport chain | No |
| GO:0045275 | respiratory chain complex III | No |
| GO:0022900 | electron transport chain | No |
| GO:0098796 | membrane protein complex | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0015980 | energy derivation by oxidation of organic compounds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 59 | 77 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2061.30 | 1258.14 | 2864.46 |
| 5d_25C | Five days - 25 degrees Celsius | 1624.39 | 992.36 | 2256.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 1415.22 | 869.09 | 1961.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 1245.06 | 764.96 | 1725.15 |
| 7d_15C | Seven days - 15 degrees Celsius | 1937.19 | 1183.44 | 2690.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 1059.59 | 643.83 | 1475.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.313002 | no |
| 3d_25C | 7d_25C | 0.071362 | no |
| 3d_25C | 7d_15C | 0.839759 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.009124 | yes |
| 5d_25C | 7d_25C | 0.605476 | no |
| 5d_25C | 7d_15C | 0.487538 | no |
| 5d_25C | 7d_30C | 0.040599 | yes |
| 5d_25C | 10d_25C | 0.233629 | no |
| 7d_25C | 7d_15C | 0.148176 | no |
| 7d_25C | 7d_30C | 0.195053 | no |
| 7d_25C | 10d_25C | 0.625714 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.027737 | yes |
| 7d_30C | 10d_25C | 0.526965 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1996.t1 MGHSVDPKNGHYIGNWGEFGCPTPQRIATYSLSPNRQRPMAGAAHAAIFNVFRRFRHQVLYVAPPFIIAYVAMNW AIERNEFLNSKPGRLLEGDNEE* |
| Coding | >Pro_DTO377G3_2|g1996.t1 ATGGGTCACTCCGTAGATCCCAAGAACGGCCACTACATCGGCAACTGGGGAGAGTTCGGTTGCCCGACTCCCCAG CGCATCGCCACCTACTCGCTGTCCCCTAACCGTCAGCGTCCCATGGCCGGTGCCGCCCACGCTGCTATCTTCAAC GTCTTCCGTCGTTTCCGCCACCAGGTTCTTTACGTTGCTCCCCCCTTCATTATCGCATACGTCGCCATGAACTGG GCCATTGAGCGCAACGAGTTCCTGAACTCCAAGCCCGGCCGTCTTCTCGAGGGTGACAATGAAGAGTAA |
| Transcript | >Pro_DTO377G3_2|g1996.t1 ATGGGTCACTCCGTAGATCCCAAGAACGGCCACTACATCGGCAACTGGGGAGAGTTCGGTTGCCCGACTCCCCAG CGCATCGCCACCTACTCGCTGTCCCCTAACCGTCAGCGTCCCATGGCCGGTGCCGCCCACGCTGCTATCTTCAAC GTCTTCCGTCGTTTCCGCCACCAGGTTCTTTACGTTGCTCCCCCCTTCATTATCGCATACGTCGCCATGAACTGG GCCATTGAGCGCAACGAGTTCCTGAACTCCAAGCCCGGCCGTCTTCTCGAGGGTGACAATGAAGAGTAA |
| Gene | >Pro_DTO377G3_2|g1996.t1 ATGGGTCACTCCGTAGATCCCAAGAACGGCCAGTAAGTCGTTTTGCCCATGCTCCTGGCGTCGTGGATTGAGTAC CGGCCTCCCGGATGCGTTGGCCGCCCGGCTACACAATTCAAATTCCTAAAGATGCCAATTGGGTCGGGCTTTAAC AGTCTCTGCGTATTCTGCGTCTCTCATTCAGTTAACTGACAATTTTTACTTCTTATAGCTACATCGGCAACTGGG GAGAGTTCGGTACGTTCGACAATAACCCTTGAACCTCTATGGACCGGATGCATACGCAGGAGGCCGACCCCTTAT GCGATATGAAGATCGGATCGATCTAGACATATTCAGAGAAATAAAGGAGATTGCAATTCGAGCGGATCGCTAATA TCCATGTTACAGGTTGCCCGACTCCCCAGCGCATCGCCACCTACTCGCTGTCCCCTAACCGTCAGCGTCCCATGG CCGGTGCCGCCCACGCTGCTATCTTCAACGTCTTCCGTCGTTTCCGCCACCAGGTTCTTTACGTTGCTCCCCCCT TCATTATCGCATACGTCGCCATGAACTGGGCCATTGAGCGGTAAGAATGCCCTTAGGAGCCGCTTCGACTGTGCG CTAATTTGGTGCTTTAGCAACGAGTTCCTGAACTCCAAGCCCGGCCGTCTTCTCGAGGGTGACAATGAAGAGTAA |