Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g199.t1
Gene name
Location	scaffold_01:521229..522912
Strand	-
Gene length (bp)	1683
Transcript length (bp)	1683
Coding sequence length (bp)	1683
Protein length (aa)	561

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00328	His_Phos_2	Histidine phosphatase superfamily (branch 2)	6.5E-06	34	326

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	427	449	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	355.99	202.96	509.02
5d_25C	Five days - 25 degrees Celsius	238.54	140.41	336.68
7d_25C	Seven days - 25 degrees Celsius	148.75	88.71	208.79
10d_25C	Ten days - 25 degrees Celsius	107.14	65.47	148.82
7d_15C	Seven days - 15 degrees Celsius	284.34	160.72	407.96
7d_30C	Seven days - 30 degrees Celsius	126.50	74.68	178.31

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.086979	no
3d_25C	7d_25C	0.000700	yes
3d_25C	7d_15C	0.407905	no
3d_25C	7d_30C	0.000700	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.029538	yes
5d_25C	7d_15C	0.530108	no
5d_25C	7d_30C	0.002761	yes
5d_25C	10d_25C	0.000700	yes
7d_25C	7d_15C	0.002761	yes
7d_25C	7d_30C	0.544260	no
7d_25C	10d_25C	0.148408	no
7d_15C	7d_30C	0.000700	yes
7d_15C	10d_25C	0.000700	yes
7d_30C	10d_25C	0.523769	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g199.t1 MVSAQDSQSIQKVWGVFAFTVYGDSKPSELTSSRTLTDYGANELATAASDFRYRYVSGGSNTIIQNISPIILDSN DVVVLSATDQNIVGSAQAFMQGLYPPLGSMNIPSSQIANGSFTQAPLNGYQYPRIVTVGNADPQSILIEGHAMCD MYNAAEGEYRGSNEAQDITRDTDAFYRKLWKLALSGAYDDTSATYTNAVAISEYLDYEVVHNDSLLESLNHADII RARSLADQYAWSTNSQQSSSSGSAIRVASPIAGQTLASSILEAFDLNIQASGTRQKMTLLFGGDEPAVALSSLLG LANQHQPNFFSRLVRGGSFVFELYSYENSSNLYPTYPGMDNLYVRFLLHNGTDNTTDFEMYSLFGHGPSRASIPY TEFHSELETFALASTEEWCLRCNAETVFCNGVLDQTVSQPKKNRGLAPAVAGVIGAVTTLAVIGLTAVIVFLICR ARKGRYPKKGSLGGFKGPSKLASDTDLSFSEPIWGNSKTDSTQASSGLAAGVGVAVQGHERTGSWEMRQGKKEIG NIEPDGMEVMSPSEENGEYWGVHSGLQPVKIRESV*
Coding	>Pro_DTO377G3_2\|g199.t1 ATGGTCTCTGCCCAAGACTCCCAATCCATCCAGAAAGTATGGGGAGTCTTTGCATTTACCGTCTACGGAGACAGC AAGCCCAGTGAGCTCACCAGCTCTCGAACATTGACCGACTACGGAGCCAACGAACTCGCCACGGCAGCATCGGAT TTCCGTTATCGTTATGTGTCTGGAGGCTCTAATACTATAATCCAGAACATATCCCCAATAATTTTGGACTCAAAC GATGTGGTTGTGCTCTCGGCAACGGATCAGAACATTGTTGGTTCCGCCCAAGCCTTCATGCAGGGTCTATACCCA CCATTGGGCTCAATGAACATACCGAGCAGCCAAATTGCGAACGGATCGTTTACACAGGCGCCATTGAACGGATAC CAATACCCTCGGATTGTTACAGTCGGTAATGCCGACCCTCAGTCTATTTTGATTGAAGGTCACGCGATGTGTGAC ATGTATAATGCCGCCGAAGGCGAATACCGTGGGAGTAACGAAGCCCAGGATATCACACGAGACACAGACGCCTTT TATAGAAAACTATGGAAACTGGCATTGTCTGGAGCCTACGATGATACTTCTGCAACTTACACAAATGCCGTTGCA ATCTCGGAATATTTGGATTATGAAGTTGTGCATAATGACAGCTTGTTGGAAAGTCTGAACCACGCCGACATCATC CGTGCTCGCTCGCTGGCGGACCAGTACGCATGGAGCACCAACAGCCAACAATCATCTTCCAGCGGGTCTGCGATC AGAGTAGCTAGCCCAATTGCCGGGCAGACATTGGCATCGAGCATTCTAGAAGCCTTCGATCTGAACATCCAGGCA AGTGGCACCCGGCAGAAGATGACTCTGTTGTTCGGCGGTGATGAGCCAGCTGTTGCCCTGTCGTCTCTGTTGGGA CTCGCAAACCAGCATCAACCCAACTTTTTCTCCCGCTTGGTACGAGGTGGCTCATTTGTTTTCGAGCTGTACAGC TACGAGAACAGCAGCAACTTGTACCCAACATACCCTGGGATGGACAATTTGTACGTGAGATTCTTGCTTCACAAT GGGACCGACAACACCACCGACTTCGAAATGTATTCCCTCTTTGGACACGGCCCTAGTCGTGCGTCAATCCCATAT ACTGAGTTTCATTCCGAGCTGGAGACATTTGCGCTGGCATCAACCGAAGAATGGTGCCTACGCTGCAACGCTGAA ACTGTGTTCTGCAATGGAGTGTTAGACCAGACCGTATCTCAGCCGAAGAAGAATAGAGGTTTGGCTCCCGCTGTA GCCGGAGTCATTGGTGCTGTTACAACGCTCGCTGTCATTGGACTTACAGCAGTCATTGTGTTCCTCATATGTCGT GCTCGCAAGGGAAGATACCCCAAGAAAGGAAGCTTGGGAGGGTTCAAAGGTCCTAGTAAACTTGCCAGTGATACC GATTTGTCGTTCAGTGAACCCATATGGGGAAACTCCAAGACTGATAGTACGCAAGCATCCAGTGGTCTCGCCGCT GGAGTTGGAGTGGCTGTACAGGGACATGAACGTACCGGAAGCTGGGAGATGAGGCAGGGAAAAAAAGAGATTGGG AATATTGAACCCGATGGCATGGAAGTGATGTCACCTTCTGAGGAAAATGGGGAGTATTGGGGTGTACACAGTGGC CTTCAACCTGTGAAAATCCGGGAGAGTGTATAG
Transcript	>Pro_DTO377G3_2\|g199.t1 ATGGTCTCTGCCCAAGACTCCCAATCCATCCAGAAAGTATGGGGAGTCTTTGCATTTACCGTCTACGGAGACAGC AAGCCCAGTGAGCTCACCAGCTCTCGAACATTGACCGACTACGGAGCCAACGAACTCGCCACGGCAGCATCGGAT TTCCGTTATCGTTATGTGTCTGGAGGCTCTAATACTATAATCCAGAACATATCCCCAATAATTTTGGACTCAAAC GATGTGGTTGTGCTCTCGGCAACGGATCAGAACATTGTTGGTTCCGCCCAAGCCTTCATGCAGGGTCTATACCCA CCATTGGGCTCAATGAACATACCGAGCAGCCAAATTGCGAACGGATCGTTTACACAGGCGCCATTGAACGGATAC CAATACCCTCGGATTGTTACAGTCGGTAATGCCGACCCTCAGTCTATTTTGATTGAAGGTCACGCGATGTGTGAC ATGTATAATGCCGCCGAAGGCGAATACCGTGGGAGTAACGAAGCCCAGGATATCACACGAGACACAGACGCCTTT TATAGAAAACTATGGAAACTGGCATTGTCTGGAGCCTACGATGATACTTCTGCAACTTACACAAATGCCGTTGCA ATCTCGGAATATTTGGATTATGAAGTTGTGCATAATGACAGCTTGTTGGAAAGTCTGAACCACGCCGACATCATC CGTGCTCGCTCGCTGGCGGACCAGTACGCATGGAGCACCAACAGCCAACAATCATCTTCCAGCGGGTCTGCGATC AGAGTAGCTAGCCCAATTGCCGGGCAGACATTGGCATCGAGCATTCTAGAAGCCTTCGATCTGAACATCCAGGCA AGTGGCACCCGGCAGAAGATGACTCTGTTGTTCGGCGGTGATGAGCCAGCTGTTGCCCTGTCGTCTCTGTTGGGA CTCGCAAACCAGCATCAACCCAACTTTTTCTCCCGCTTGGTACGAGGTGGCTCATTTGTTTTCGAGCTGTACAGC TACGAGAACAGCAGCAACTTGTACCCAACATACCCTGGGATGGACAATTTGTACGTGAGATTCTTGCTTCACAAT GGGACCGACAACACCACCGACTTCGAAATGTATTCCCTCTTTGGACACGGCCCTAGTCGTGCGTCAATCCCATAT ACTGAGTTTCATTCCGAGCTGGAGACATTTGCGCTGGCATCAACCGAAGAATGGTGCCTACGCTGCAACGCTGAA ACTGTGTTCTGCAATGGAGTGTTAGACCAGACCGTATCTCAGCCGAAGAAGAATAGAGGTTTGGCTCCCGCTGTA GCCGGAGTCATTGGTGCTGTTACAACGCTCGCTGTCATTGGACTTACAGCAGTCATTGTGTTCCTCATATGTCGT GCTCGCAAGGGAAGATACCCCAAGAAAGGAAGCTTGGGAGGGTTCAAAGGTCCTAGTAAACTTGCCAGTGATACC GATTTGTCGTTCAGTGAACCCATATGGGGAAACTCCAAGACTGATAGTACGCAAGCATCCAGTGGTCTCGCCGCT GGAGTTGGAGTGGCTGTACAGGGACATGAACGTACCGGAAGCTGGGAGATGAGGCAGGGAAAAAAAGAGATTGGG AATATTGAACCCGATGGCATGGAAGTGATGTCACCTTCTGAGGAAAATGGGGAGTATTGGGGTGTACACAGTGGC CTTCAACCTGTGAAAATCCGGGAGAGTGTATAG
Gene	>Pro_DTO377G3_2\|g199.t1 ATGGTCTCTGCCCAAGACTCCCAATCCATCCAGAAAGTATGGGGAGTCTTTGCATTTACCGTCTACGGAGACAGC AAGCCCAGTGAGCTCACCAGCTCTCGAACATTGACCGACTACGGAGCCAACGAACTCGCCACGGCAGCATCGGAT TTCCGTTATCGTTATGTGTCTGGAGGCTCTAATACTATAATCCAGAACATATCCCCAATAATTTTGGACTCAAAC GATGTGGTTGTGCTCTCGGCAACGGATCAGAACATTGTTGGTTCCGCCCAAGCCTTCATGCAGGGTCTATACCCA CCATTGGGCTCAATGAACATACCGAGCAGCCAAATTGCGAACGGATCGTTTACACAGGCGCCATTGAACGGATAC CAATACCCTCGGATTGTTACAGTCGGTAATGCCGACCCTCAGTCTATTTTGATTGAAGGTCACGCGATGTGTGAC ATGTATAATGCCGCCGAAGGCGAATACCGTGGGAGTAACGAAGCCCAGGATATCACACGAGACACAGACGCCTTT TATAGAAAACTATGGAAACTGGCATTGTCTGGAGCCTACGATGATACTTCTGCAACTTACACAAATGCCGTTGCA ATCTCGGAATATTTGGATTATGAAGTTGTGCATAATGACAGCTTGTTGGAAAGTCTGAACCACGCCGACATCATC CGTGCTCGCTCGCTGGCGGACCAGTACGCATGGAGCACCAACAGCCAACAATCATCTTCCAGCGGGTCTGCGATC AGAGTAGCTAGCCCAATTGCCGGGCAGACATTGGCATCGAGCATTCTAGAAGCCTTCGATCTGAACATCCAGGCA AGTGGCACCCGGCAGAAGATGACTCTGTTGTTCGGCGGTGATGAGCCAGCTGTTGCCCTGTCGTCTCTGTTGGGA CTCGCAAACCAGCATCAACCCAACTTTTTCTCCCGCTTGGTACGAGGTGGCTCATTTGTTTTCGAGCTGTACAGC TACGAGAACAGCAGCAACTTGTACCCAACATACCCTGGGATGGACAATTTGTACGTGAGATTCTTGCTTCACAAT GGGACCGACAACACCACCGACTTCGAAATGTATTCCCTCTTTGGACACGGCCCTAGTCGTGCGTCAATCCCATAT ACTGAGTTTCATTCCGAGCTGGAGACATTTGCGCTGGCATCAACCGAAGAATGGTGCCTACGCTGCAACGCTGAA ACTGTGTTCTGCAATGGAGTGTTAGACCAGACCGTATCTCAGCCGAAGAAGAATAGAGGTTTGGCTCCCGCTGTA GCCGGAGTCATTGGTGCTGTTACAACGCTCGCTGTCATTGGACTTACAGCAGTCATTGTGTTCCTCATATGTCGT GCTCGCAAGGGAAGATACCCCAAGAAAGGAAGCTTGGGAGGGTTCAAAGGTCCTAGTAAACTTGCCAGTGATACC GATTTGTCGTTCAGTGAACCCATATGGGGAAACTCCAAGACTGATAGTACGCAAGCATCCAGTGGTCTCGCCGCT GGAGTTGGAGTGGCTGTACAGGGACATGAACGTACCGGAAGCTGGGAGATGAGGCAGGGAAAAAAAGAGATTGGG AATATTGAACCCGATGGCATGGAAGTGATGTCACCTTCTGAGGAAAATGGGGAGTATTGGGGTGTACACAGTGGC CTTCAACCTGTGAAAATCCGGGAGAGTGTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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