© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1983.t1 |
| Gene name | |
| Location | scaffold_02:1344024..1345831 |
| Strand | + |
| Gene length (bp) | 1807 |
| Transcript length (bp) | 1245 |
| Coding sequence length (bp) | 1245 |
| Protein length (aa) | 415 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08438 | MMR_HSR1_C | GTPase of unknown function C-terminal | 5.7E-35 | 226 | 345 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 1.2E-19 | 7 | 124 |
| PF02421 | FeoB_N | Ferrous iron transport protein B | 1.8E-07 | 7 | 43 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 50.30 | 29.67 | 70.94 |
| 5d_25C | Five days - 25 degrees Celsius | 79.90 | 47.69 | 112.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 132.75 | 80.04 | 185.45 |
| 10d_25C | Ten days - 25 degrees Celsius | 388.25 | 221.32 | 555.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.60 | 28.49 | 68.70 |
| 7d_30C | Seven days - 30 degrees Celsius | 120.61 | 71.84 | 169.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.030233 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.922354 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.012303 | yes |
| 5d_25C | 7d_15C | 0.023673 | yes |
| 5d_25C | 7d_30C | 0.053316 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.746196 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 1305 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1983.t1 MGRDPLIGLVGKPSSGKSTTLNSLTDATSKVGNFPFTTIDPQRAIGYLQIDCPCQRYNVSDRCQPNYGACHEGRR SVPIELLDVAGLVPGAHQGRGLGNKFLDDLRHADALIHVVDVSGTTDAEGKATRGYDPSVDIEWLRSEIVRWVLG NLMERWGSIKRRHQALKANPVDTLQKQFAGYGSTHATVARFMDKLALKEPLEDWSNETVELVVNAFIDEKFPTVF ALNKIDHPDADKNISKIAKMQSPESIVLCSAISEVFLRKLAKQDYIKYVEGSEFIDTREDLIEMGDPDGGGLKEM DEKLKTRVENMKDMVLYRFGSTGVVQCLSRAAELLGLVPVFPVRNVATFNSGTGTAVFRDCVLVNKNSTVGDVAR KVMGDVPINYVEGVGGTRVSEDDIVAVGKHDILSFKVGR* |
| Coding | >Pro_DTO377G3_2|g1983.t1 ATGGGTCGAGATCCGCTGATCGGACTGGTGGGAAAGCCGTCTAGTGGAAAATCTACAACATTGAACAGCTTGACC GATGCGACTTCGAAAGTCGGAAACTTCCCCTTCACAACCATTGACCCCCAGCGAGCCATCGGATACCTTCAAATC GACTGCCCATGCCAGCGATACAATGTTTCAGATCGCTGCCAGCCCAATTACGGAGCCTGCCACGAAGGGCGACGT TCCGTGCCGATTGAGTTGCTGGATGTTGCAGGTCTTGTCCCAGGCGCGCATCAAGGACGCGGACTAGGTAACAAG TTCTTGGACGATCTGCGTCATGCCGATGCTCTAATTCACGTCGTGGATGTGAGCGGGACCACGGATGCTGAAGGA AAGGCTACTCGAGGTTACGATCCCTCAGTAGACATTGAGTGGTTGCGATCAGAGATAGTTCGATGGGTTCTAGGA AACTTGATGGAGAGGTGGGGTTCAATAAAGAGGAGACATCAGGCATTGAAGGCAAACCCTGTCGACACATTACAG AAACAGTTTGCTGGTTATGGAAGTACCCACGCCACTGTTGCGCGATTTATGGATAAACTCGCCTTAAAAGAACCA TTGGAAGACTGGTCAAATGAGACGGTGGAGCTTGTTGTGAACGCTTTTATCGACGAGAAATTCCCCACTGTGTTC GCGTTGAACAAGATCGACCACCCAGATGCAGACAAGAACATCAGCAAAATTGCGAAAATGCAATCTCCCGAAAGC ATTGTGCTTTGCTCCGCTATATCCGAGGTGTTCCTCCGAAAGCTGGCAAAGCAGGATTACATCAAGTACGTTGAA GGCAGTGAGTTCATCGACACGCGAGAAGATTTGATCGAGATGGGCGACCCAGACGGAGGAGGCCTCAAAGAGATG GACGAGAAATTGAAAACTCGGGTTGAGAACATGAAAGATATGGTGCTGTATCGATTTGGATCTACCGGGGTCGTC CAATGTCTTTCCCGAGCCGCAGAGCTTCTAGGACTCGTACCAGTGTTCCCCGTTCGAAACGTGGCGACATTCAAT TCTGGCACTGGAACTGCTGTATTCCGCGACTGTGTTTTGGTCAATAAAAACAGTACCGTCGGTGATGTTGCCCGG AAGGTGATGGGCGACGTACCTATCAACTATGTCGAGGGTGTGGGTGGAACTCGAGTCTCCGAGGATGACATTGTG GCAGTTGGGAAACACGACATATTATCGTTCAAGGTTGGTCGGTAG |
| Transcript | >Pro_DTO377G3_2|g1983.t1 ATGGGTCGAGATCCGCTGATCGGACTGGTGGGAAAGCCGTCTAGTGGAAAATCTACAACATTGAACAGCTTGACC GATGCGACTTCGAAAGTCGGAAACTTCCCCTTCACAACCATTGACCCCCAGCGAGCCATCGGATACCTTCAAATC GACTGCCCATGCCAGCGATACAATGTTTCAGATCGCTGCCAGCCCAATTACGGAGCCTGCCACGAAGGGCGACGT TCCGTGCCGATTGAGTTGCTGGATGTTGCAGGTCTTGTCCCAGGCGCGCATCAAGGACGCGGACTAGGTAACAAG TTCTTGGACGATCTGCGTCATGCCGATGCTCTAATTCACGTCGTGGATGTGAGCGGGACCACGGATGCTGAAGGA AAGGCTACTCGAGGTTACGATCCCTCAGTAGACATTGAGTGGTTGCGATCAGAGATAGTTCGATGGGTTCTAGGA AACTTGATGGAGAGGTGGGGTTCAATAAAGAGGAGACATCAGGCATTGAAGGCAAACCCTGTCGACACATTACAG AAACAGTTTGCTGGTTATGGAAGTACCCACGCCACTGTTGCGCGATTTATGGATAAACTCGCCTTAAAAGAACCA TTGGAAGACTGGTCAAATGAGACGGTGGAGCTTGTTGTGAACGCTTTTATCGACGAGAAATTCCCCACTGTGTTC GCGTTGAACAAGATCGACCACCCAGATGCAGACAAGAACATCAGCAAAATTGCGAAAATGCAATCTCCCGAAAGC ATTGTGCTTTGCTCCGCTATATCCGAGGTGTTCCTCCGAAAGCTGGCAAAGCAGGATTACATCAAGTACGTTGAA GGCAGTGAGTTCATCGACACGCGAGAAGATTTGATCGAGATGGGCGACCCAGACGGAGGAGGCCTCAAAGAGATG GACGAGAAATTGAAAACTCGGGTTGAGAACATGAAAGATATGGTGCTGTATCGATTTGGATCTACCGGGGTCGTC CAATGTCTTTCCCGAGCCGCAGAGCTTCTAGGACTCGTACCAGTGTTCCCCGTTCGAAACGTGGCGACATTCAAT TCTGGCACTGGAACTGCTGTATTCCGCGACTGTGTTTTGGTCAATAAAAACAGTACCGTCGGTGATGTTGCCCGG AAGGTGATGGGCGACGTACCTATCAACTATGTCGAGGGTGTGGGTGGAACTCGAGTCTCCGAGGATGACATTGTG GCAGTTGGGAAACACGACATATTATCGTTCAAGGTTGGTCGGTAG |
| Gene | >Pro_DTO377G3_2|g1983.t1 ATGGGTCGAGATCCGCTGATCGGACTGGTGGGAAAGGTATGTTGTTCCCCTCCATTGTTCTCACACCCCACTGAC GAGGGGCATAGCCGTCTAGTGGAAAATCTACAACATTGAACAGCTTGACCGATGCGACTTCGAAAGTCGGTAAGT GAACCGAGATGCGATTATGACCAACTGAAACCTAATAAATTATGTTCGGAACAGGAAACTTCCCGTATGTGCTCC CCGATTGTTCTACATGAGCATCTCCACCTTATCGCATTGATCGCGCAGACCGTGTTGACAACCAACAGCTTCACA ACCATTGACCCCCAGCGAGCCATCGGATACCTTCAAATCGACTGCCCATGCCAGCGATACAATGTTTCAGATCGC TGCCAGCCCAATTACGGAGCCTGCCACGAAGGGCGACGTTCCGTGCCGATTGAGTTGCTGGATGTTGCAGGTCTT GTCCCAGGCGCGCATCAAGGACGCGGACTAGGTAACAAGTTCTTGGACGATCTGCGTCATGCCGATGCTCTAATT CACGTCGTGGATGTGAGCGGGACCACGGATGCTGAAGGTTAGTTGGGTGTGCCGGATTGAATACAATGGCGGGAT CGGGTGTTGATAAATATCGCAGGAAAGGCTACTCGAGGTTACGATCCCTCAGTAGACATTGAGTGGTTGCGATCA GAGATAGTTCGATGGGTTCTAGGAAACTTGATGGAGAGGTGGTACGTTTGCAAGTGCCAACAAGGGAACGAGGGA CAAGTGCTGATCTCTCCTTAGGGGTTCAATAAAGAGGAGACATCAGGCATTGAGTCAGTGGACTTTTCCAATGCT ATTTGTTACACCGAACTGACTCTTAGCACAGAGGCAAACCCTGTCGACACATTACAGAAACAGTTTGCTGGTTAT GGAAGTACCCACGCCACTGTTGCGCGATTTATGGATAAACTCGCCTTAAAAGAACCATTGGAAGACTGGTCAAAT GAGACGGTGGAGCTTGTTGTGAACGCTTTTATCGACGAGAAATTCCCCACTGTGTTCGCGTTGAACAAGATCGAC CACCCAGATGCAGACAAGGTACGAATATTTAGCTTATGGCCCATATATTGTTCTGACAGGAATTGCAGAACATCA GCAAAATTGCGAAAATGCAATCTCCCGAAAGCATTGTGCTTTGCTCCGCTATATCCGAGGTGTTCCTCCGAAAGC TGGCAAAGCAGGATTACATCAAGTACGTTGAAGGCAGTGAGTTCATCGACACGCGAGAAGATTTGATCGAGATGG GCGACCCAGACGGAGGAGGCCTCAAAGAGATGGACGAGAAATTGAAAACGTATGTTCAGTGCTCATATAAATGTC GTACTTTTGCTGACTGACGTCGCTCTAGTCGGGTTGAGAACATGAAAGATATGGTGCTGTATCGATTTGGATCTA CCGGGGTCGTCCAATGTCTTTCCCGAGCCGCAGAGCTTCTAGGACTCGTACCAGTGTTCCCCGTTCGAAACGTGG CGACATTCAATTCTGGCACTGGAACTGCTGTATTCCGCGACTGTGTTTTGGTCAATAAGTAAGTACTCTCTATTA GAAGGCTGACGCCAGTCTAACATTTCACAGAAACAGTACCGTCGGTGATGTTGCCCGGAAGGTGATGGGCGACGT ACCTATCAACTATGTCGAGGGTGTGGGTGGAACTCGAGTCTCCGAGGATGACATTGTGGCAGTTGGGAAACACGA CGTGAGTGCCCCCACTAACTACATAATACGGTTGATTGACTGATTACCATGGCAGATATTATCGTTCAAGGTTGG TCGGTAG |