© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1979.t1 |
| Gene name | |
| Location | scaffold_02:1338035..1338855 |
| Strand | + |
| Gene length (bp) | 820 |
| Transcript length (bp) | 660 |
| Coding sequence length (bp) | 660 |
| Protein length (aa) | 220 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01248 | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 5.9E-19 | 90 | 188 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 172.60 | 104.36 | 240.84 |
| 5d_25C | Five days - 25 degrees Celsius | 130.37 | 77.14 | 183.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 110.65 | 64.15 | 157.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 81.36 | 44.70 | 118.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 159.98 | 95.83 | 224.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 141.94 | 84.55 | 199.34 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.233549 | no |
| 3d_25C | 7d_25C | 0.038966 | yes |
| 3d_25C | 7d_15C | 0.806227 | no |
| 3d_25C | 7d_30C | 0.440026 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.555050 | no |
| 5d_25C | 7d_15C | 0.432028 | no |
| 5d_25C | 7d_30C | 0.778988 | no |
| 5d_25C | 10d_25C | 0.042821 | yes |
| 7d_25C | 7d_15C | 0.107998 | no |
| 7d_25C | 7d_30C | 0.310305 | no |
| 7d_25C | 10d_25C | 0.222537 | no |
| 7d_15C | 7d_30C | 0.676117 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.013513 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1979.t1 MGKDKVEKKDRAEKKEKRADKDGVHKVKKEKKEKKDKTTLVDAVEKEIVSEPMEGLEQTAVVKSEVDAVVPIGAL VPFAHPLVEDKQAKKVLKSVKKAAVNKSLKRGVKEVVKALRKSPIPAANAAIGVPSGVVVLAADISPMDVISHIP VLCEDHGIPYVFVTSRAELGASAATKRPTSVVMVTPKAAKGKKEDDEEFTKVFEELAGLAQKEIKKLTV* |
| Coding | >Pro_DTO377G3_2|g1979.t1 ATGGGCAAGGACAAGGTCGAGAAGAAGGACCGTGCTGAGAAGAAGGAGAAGCGCGCGGACAAGGACGGTGTGCAC AAGGTCAAGAAGGAGAAGAAAGAGAAGAAGGATAAGACTACTCTTGTCGATGCAGTAGAGAAGGAGATTGTCTCC GAGCCCATGGAGGGTCTCGAGCAGACCGCTGTTGTCAAGAGTGAGGTCGACGCCGTTGTCCCCATTGGCGCCCTC GTGCCGTTCGCCCACCCATTGGTTGAGGACAAGCAGGCCAAGAAGGTTTTGAAGAGTGTCAAGAAGGCTGCCGTC AACAAGTCTCTCAAGCGTGGTGTCAAGGAAGTCGTCAAGGCTCTCCGCAAGTCTCCCATCCCCGCTGCCAATGCT GCCATCGGTGTCCCTAGCGGTGTCGTCGTTCTCGCTGCCGATATCTCCCCCATGGATGTTATCTCCCACATTCCC GTTCTGTGCGAGGACCACGGAATTCCCTACGTCTTTGTCACCTCCCGTGCTGAGCTTGGTGCTTCCGCTGCCACC AAGCGCCCTACCAGTGTGGTCATGGTTACCCCCAAGGCTGCCAAGGGCAAGAAGGAGGATGATGAGGAGTTCACC AAGGTCTTCGAGGAGCTTGCTGGCTTGGCCCAGAAGGAGATCAAGAAGCTGACAGTCTAA |
| Transcript | >Pro_DTO377G3_2|g1979.t1 ATGGGCAAGGACAAGGTCGAGAAGAAGGACCGTGCTGAGAAGAAGGAGAAGCGCGCGGACAAGGACGGTGTGCAC AAGGTCAAGAAGGAGAAGAAAGAGAAGAAGGATAAGACTACTCTTGTCGATGCAGTAGAGAAGGAGATTGTCTCC GAGCCCATGGAGGGTCTCGAGCAGACCGCTGTTGTCAAGAGTGAGGTCGACGCCGTTGTCCCCATTGGCGCCCTC GTGCCGTTCGCCCACCCATTGGTTGAGGACAAGCAGGCCAAGAAGGTTTTGAAGAGTGTCAAGAAGGCTGCCGTC AACAAGTCTCTCAAGCGTGGTGTCAAGGAAGTCGTCAAGGCTCTCCGCAAGTCTCCCATCCCCGCTGCCAATGCT GCCATCGGTGTCCCTAGCGGTGTCGTCGTTCTCGCTGCCGATATCTCCCCCATGGATGTTATCTCCCACATTCCC GTTCTGTGCGAGGACCACGGAATTCCCTACGTCTTTGTCACCTCCCGTGCTGAGCTTGGTGCTTCCGCTGCCACC AAGCGCCCTACCAGTGTGGTCATGGTTACCCCCAAGGCTGCCAAGGGCAAGAAGGAGGATGATGAGGAGTTCACC AAGGTCTTCGAGGAGCTTGCTGGCTTGGCCCAGAAGGAGATCAAGAAGCTGACAGTCTAA |
| Gene | >Pro_DTO377G3_2|g1979.t1 ATGGGCAAGGACAAGGTCGAGAAGAAGGACCGTGCTGAGAAGAAGGAGAAGCGCGCGGACAAGGACGGTGTGCAC AAGGTCAAGAAGGAGAAGAAAGAGAAGAAGGATAAGACTACTCTTGTCGATGCAGTAGAGAAGGAGATTGTCTCC GAGCCCATGGAGGGTCTCGAGCAGACCGCTGTTGTCAAGAGTGAGGTCGACGCCGTTGTCCCCATTGGCGCCCTC GTGCCGTTCGCCCACCCATTGGTTGAGGACAAGCAGGCCAAGAAGGTTTTGAAGAGTGTCAAGAAGGGTACGTGG ATTGTCTTTTTAAGTTTTTACTTGCCTCTTTTACTATCTGTGCGCATGGTCGATTTTCATCGGATTTGGATCGCC CATATTCACTGATCGCATGATTGCGCGACTTTTTTTTCTTATCTCCAGATTCTCCATGCTAACCTTAGTTCTTCT AGCTGCCGTCAACAAGTCTCTCAAGCGTGGTGTCAAGGAAGTCGTCAAGGCTCTCCGCAAGTCTCCCATCCCCGC TGCCAATGCTGCCATCGGTGTCCCTAGCGGTGTCGTCGTTCTCGCTGCCGATATCTCCCCCATGGATGTTATCTC CCACATTCCCGTTCTGTGCGAGGACCACGGAATTCCCTACGTCTTTGTCACCTCCCGTGCTGAGCTTGGTGCTTC CGCTGCCACCAAGCGCCCTACCAGTGTGGTCATGGTTACCCCCAAGGCTGCCAAGGGCAAGAAGGAGGATGATGA GGAGTTCACCAAGGTCTTCGAGGAGCTTGCTGGCTTGGCCCAGAAGGAGATCAAGAAGCTGACAGTCTAA |