© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1962.t1 |
| Gene name | |
| Location | scaffold_02:1294899..1296477 |
| Strand | - |
| Gene length (bp) | 1578 |
| Transcript length (bp) | 1578 |
| Coding sequence length (bp) | 1578 |
| Protein length (aa) | 526 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 3.0E-60 | 27 | 472 |
| PF00324 | AA_permease | Amino acid permease | 2.9E-32 | 42 | 481 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 62 | 93 | 31 |
| 3 | 114 | 136 | 22 |
| 4 | 151 | 173 | 22 |
| 5 | 182 | 201 | 19 |
| 6 | 221 | 243 | 22 |
| 7 | 263 | 285 | 22 |
| 8 | 311 | 333 | 22 |
| 9 | 366 | 388 | 22 |
| 10 | 392 | 414 | 22 |
| 11 | 427 | 449 | 22 |
| 12 | 464 | 483 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 38.55 | 22.23 | 54.87 |
| 5d_25C | Five days - 25 degrees Celsius | 26.73 | 14.35 | 39.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.08 | 12.74 | 35.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 23.19 | 12.22 | 34.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 32.48 | 17.96 | 47.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 16.19 | 7.81 | 24.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.143642 | no |
| 3d_25C | 7d_25C | 0.050137 | no |
| 3d_25C | 7d_15C | 0.554393 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.037164 | yes |
| 5d_25C | 7d_25C | 0.774710 | no |
| 5d_25C | 7d_15C | 0.516058 | no |
| 5d_25C | 7d_30C | 0.064497 | no |
| 5d_25C | 10d_25C | 0.673941 | no |
| 7d_25C | 7d_15C | 0.278913 | no |
| 7d_25C | 7d_30C | 0.158509 | no |
| 7d_25C | 10d_25C | 0.927343 | no |
| 7d_15C | 7d_30C | 0.007437 | yes |
| 7d_15C | 10d_25C | 0.214422 | no |
| 7d_30C | 10d_25C | 0.222363 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1962.t1 MRSSSVDASADEALARMGYKSELPRNLSMLSILGLSFAIMAAPFGLSTTLYITLSDGLSVTILWGWVFVSLISIA IAASLAEICAVYPTAGGVYYWSAMLSTRRWAPLMSFIDGWLTLVGNWTVTLSIIFSGGQLILSAISIFNESFVAN AWQTVLMFWAVMLVCALVNIFFSRYLDLINKVCIFWTAASVIIILVTLLTMADNRRDADFVFAHYDSSTSGWPAG WAFFVGLLQAAYTLTGYGMVAAMCEEVQNPHREVPKAIVLSVVAAGITGLFYLIPILFVMPNVQMLREVASGQPI GLLFKTVTGSAGGGFGLLFLILGIMMFAGIGSLTAASRCTYAFARDGAIPGFTLWRQVNTKLDVPVWAIVLSAVV DGLLGLIYFGSTAAFNSFTGVATICLSTSYGLPILISLIRGRQDVKNSSFSLGRFGFAINCVTIAWIVLAVALFC MPVTLPVTPESMNYASAVFAGFGAISVIWYFAYARKHFTGPPISGDEARAATELMTGTPVDAEKPLQTMKKLPSE * |
| Coding | >Pro_DTO377G3_2|g1962.t1 ATGCGAAGTTCTTCTGTCGATGCCTCCGCCGACGAGGCATTGGCCCGTATGGGCTACAAGAGTGAATTGCCTCGA AACCTGAGCATGCTGAGCATCCTCGGCTTATCCTTTGCCATCATGGCAGCTCCCTTCGGACTGAGCACGACCCTC TACATCACCCTCTCCGACGGTCTATCCGTCACCATACTCTGGGGTTGGGTCTTCGTCTCCCTGATCTCAATCGCC ATCGCCGCCTCTCTCGCCGAGATCTGCGCCGTTTACCCAACAGCAGGAGGCGTGTACTACTGGAGCGCGATGCTC TCAACGCGTCGCTGGGCCCCATTGATGTCCTTCATCGACGGCTGGCTAACCCTCGTGGGCAATTGGACCGTCACA CTGAGTATCATCTTCTCCGGCGGCCAATTGATCCTCAGCGCCATCTCCATCTTCAATGAGTCCTTCGTTGCCAAT GCGTGGCAGACCGTATTGATGTTCTGGGCAGTCATGCTCGTCTGCGCCCTAGTCAACATCTTTTTCTCGCGTTAT CTCGATCTCATCAACAAGGTCTGCATCTTCTGGACCGCAGCCAGTGTCATCATTATCCTTGTCACGCTTTTGACA ATGGCCGACAACCGCAGAGACGCTGACTTTGTCTTCGCTCACTACGACTCCTCTACGAGCGGCTGGCCCGCTGGA TGGGCTTTCTTCGTGGGTTTGCTGCAGGCGGCATACACCCTGACCGGCTACGGAATGGTCGCTGCCATGTGCGAA GAGGTGCAGAACCCACACCGCGAGGTGCCCAAGGCAATCGTGCTATCCGTGGTGGCTGCTGGCATCACCGGCCTG TTCTACTTGATCCCGATTCTGTTCGTGATGCCCAACGTGCAGATGCTGCGCGAGGTCGCCAGCGGCCAGCCGATC GGCCTGCTCTTCAAGACAGTGACCGGCTCTGCAGGCGGTGGCTTCGGCTTACTCTTCCTGATTCTGGGGATCATG ATGTTCGCCGGCATCGGGTCTCTCACAGCTGCCAGTCGCTGCACGTATGCGTTCGCTCGCGACGGCGCCATTCCG GGCTTCACGCTCTGGCGGCAGGTGAACACCAAGCTGGATGTGCCTGTGTGGGCTATCGTGCTATCGGCCGTCGTG GATGGATTGCTAGGACTGATCTATTTTGGTTCCACGGCTGCGTTCAACTCCTTCACCGGTGTGGCTACTATCTGT CTGTCGACCTCGTACGGTCTCCCGATTTTGATCTCTTTGATTCGAGGCCGCCAAGACGTGAAGAATTCCTCGTTC TCTCTCGGTCGCTTTGGATTCGCCATCAACTGCGTTACCATTGCGTGGATCGTGCTGGCTGTCGCTCTCTTCTGC ATGCCCGTTACCTTGCCTGTTACCCCGGAGTCTATGAATTATGCCAGTGCTGTTTTCGCTGGATTCGGTGCTATT AGTGTCATCTGGTACTTTGCCTATGCGCGCAAGCACTTTACTGGACCTCCGATTAGCGGTGACGAGGCGCGCGCC GCCACCGAGTTGATGACGGGTACGCCAGTGGATGCGGAGAAACCGTTGCAGACGATGAAGAAGTTACCGAGCGAG TAA |
| Transcript | >Pro_DTO377G3_2|g1962.t1 ATGCGAAGTTCTTCTGTCGATGCCTCCGCCGACGAGGCATTGGCCCGTATGGGCTACAAGAGTGAATTGCCTCGA AACCTGAGCATGCTGAGCATCCTCGGCTTATCCTTTGCCATCATGGCAGCTCCCTTCGGACTGAGCACGACCCTC TACATCACCCTCTCCGACGGTCTATCCGTCACCATACTCTGGGGTTGGGTCTTCGTCTCCCTGATCTCAATCGCC ATCGCCGCCTCTCTCGCCGAGATCTGCGCCGTTTACCCAACAGCAGGAGGCGTGTACTACTGGAGCGCGATGCTC TCAACGCGTCGCTGGGCCCCATTGATGTCCTTCATCGACGGCTGGCTAACCCTCGTGGGCAATTGGACCGTCACA CTGAGTATCATCTTCTCCGGCGGCCAATTGATCCTCAGCGCCATCTCCATCTTCAATGAGTCCTTCGTTGCCAAT GCGTGGCAGACCGTATTGATGTTCTGGGCAGTCATGCTCGTCTGCGCCCTAGTCAACATCTTTTTCTCGCGTTAT CTCGATCTCATCAACAAGGTCTGCATCTTCTGGACCGCAGCCAGTGTCATCATTATCCTTGTCACGCTTTTGACA ATGGCCGACAACCGCAGAGACGCTGACTTTGTCTTCGCTCACTACGACTCCTCTACGAGCGGCTGGCCCGCTGGA TGGGCTTTCTTCGTGGGTTTGCTGCAGGCGGCATACACCCTGACCGGCTACGGAATGGTCGCTGCCATGTGCGAA GAGGTGCAGAACCCACACCGCGAGGTGCCCAAGGCAATCGTGCTATCCGTGGTGGCTGCTGGCATCACCGGCCTG TTCTACTTGATCCCGATTCTGTTCGTGATGCCCAACGTGCAGATGCTGCGCGAGGTCGCCAGCGGCCAGCCGATC GGCCTGCTCTTCAAGACAGTGACCGGCTCTGCAGGCGGTGGCTTCGGCTTACTCTTCCTGATTCTGGGGATCATG ATGTTCGCCGGCATCGGGTCTCTCACAGCTGCCAGTCGCTGCACGTATGCGTTCGCTCGCGACGGCGCCATTCCG GGCTTCACGCTCTGGCGGCAGGTGAACACCAAGCTGGATGTGCCTGTGTGGGCTATCGTGCTATCGGCCGTCGTG GATGGATTGCTAGGACTGATCTATTTTGGTTCCACGGCTGCGTTCAACTCCTTCACCGGTGTGGCTACTATCTGT CTGTCGACCTCGTACGGTCTCCCGATTTTGATCTCTTTGATTCGAGGCCGCCAAGACGTGAAGAATTCCTCGTTC TCTCTCGGTCGCTTTGGATTCGCCATCAACTGCGTTACCATTGCGTGGATCGTGCTGGCTGTCGCTCTCTTCTGC ATGCCCGTTACCTTGCCTGTTACCCCGGAGTCTATGAATTATGCCAGTGCTGTTTTCGCTGGATTCGGTGCTATT AGTGTCATCTGGTACTTTGCCTATGCGCGCAAGCACTTTACTGGACCTCCGATTAGCGGTGACGAGGCGCGCGCC GCCACCGAGTTGATGACGGGTACGCCAGTGGATGCGGAGAAACCGTTGCAGACGATGAAGAAGTTACCGAGCGAG TAA |
| Gene | >Pro_DTO377G3_2|g1962.t1 ATGCGAAGTTCTTCTGTCGATGCCTCCGCCGACGAGGCATTGGCCCGTATGGGCTACAAGAGTGAATTGCCTCGA AACCTGAGCATGCTGAGCATCCTCGGCTTATCCTTTGCCATCATGGCAGCTCCCTTCGGACTGAGCACGACCCTC TACATCACCCTCTCCGACGGTCTATCCGTCACCATACTCTGGGGTTGGGTCTTCGTCTCCCTGATCTCAATCGCC ATCGCCGCCTCTCTCGCCGAGATCTGCGCCGTTTACCCAACAGCAGGAGGCGTGTACTACTGGAGCGCGATGCTC TCAACGCGTCGCTGGGCCCCATTGATGTCCTTCATCGACGGCTGGCTAACCCTCGTGGGCAATTGGACCGTCACA CTGAGTATCATCTTCTCCGGCGGCCAATTGATCCTCAGCGCCATCTCCATCTTCAATGAGTCCTTCGTTGCCAAT GCGTGGCAGACCGTATTGATGTTCTGGGCAGTCATGCTCGTCTGCGCCCTAGTCAACATCTTTTTCTCGCGTTAT CTCGATCTCATCAACAAGGTCTGCATCTTCTGGACCGCAGCCAGTGTCATCATTATCCTTGTCACGCTTTTGACA ATGGCCGACAACCGCAGAGACGCTGACTTTGTCTTCGCTCACTACGACTCCTCTACGAGCGGCTGGCCCGCTGGA TGGGCTTTCTTCGTGGGTTTGCTGCAGGCGGCATACACCCTGACCGGCTACGGAATGGTCGCTGCCATGTGCGAA GAGGTGCAGAACCCACACCGCGAGGTGCCCAAGGCAATCGTGCTATCCGTGGTGGCTGCTGGCATCACCGGCCTG TTCTACTTGATCCCGATTCTGTTCGTGATGCCCAACGTGCAGATGCTGCGCGAGGTCGCCAGCGGCCAGCCGATC GGCCTGCTCTTCAAGACAGTGACCGGCTCTGCAGGCGGTGGCTTCGGCTTACTCTTCCTGATTCTGGGGATCATG ATGTTCGCCGGCATCGGGTCTCTCACAGCTGCCAGTCGCTGCACGTATGCGTTCGCTCGCGACGGCGCCATTCCG GGCTTCACGCTCTGGCGGCAGGTGAACACCAAGCTGGATGTGCCTGTGTGGGCTATCGTGCTATCGGCCGTCGTG GATGGATTGCTAGGACTGATCTATTTTGGTTCCACGGCTGCGTTCAACTCCTTCACCGGTGTGGCTACTATCTGT CTGTCGACCTCGTACGGTCTCCCGATTTTGATCTCTTTGATTCGAGGCCGCCAAGACGTGAAGAATTCCTCGTTC TCTCTCGGTCGCTTTGGATTCGCCATCAACTGCGTTACCATTGCGTGGATCGTGCTGGCTGTCGCTCTCTTCTGC ATGCCCGTTACCTTGCCTGTTACCCCGGAGTCTATGAATTATGCCAGTGCTGTTTTCGCTGGATTCGGTGCTATT AGTGTCATCTGGTACTTTGCCTATGCGCGCAAGCACTTTACTGGACCTCCGATTAGCGGTGACGAGGCGCGCGCC GCCACCGAGTTGATGACGGGTACGCCAGTGGATGCGGAGAAACCGTTGCAGACGATGAAGAAGTTACCGAGCGAG TAA |