© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1961.t1 |
| Gene name | |
| Location | scaffold_02:1292974..1294421 |
| Strand | - |
| Gene length (bp) | 1447 |
| Transcript length (bp) | 1188 |
| Coding sequence length (bp) | 1188 |
| Protein length (aa) | 396 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00887 | ACBP | Acyl CoA binding protein | 4.6E-21 | 6 | 90 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000062 | fatty-acyl-CoA binding | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901567 | fatty acid derivative binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901681 | sulfur compound binding | No |
| GO:0120227 | acyl-CoA binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0033218 | amide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 337 | 359 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1961.t1 MSDSVDRVFVHALNTVKRIPRTGTARPPAAERLALYGLYKQSMEGDVEGVMDRPIGNTPEVHAECEKWDAWYAQR DISRTEAKRRYISTLIHTMHQYASQTPEARELVAELEFVWDQIKFNTSSSSTSSPVNTVGVPPLSRSAYGSIAGR MAEEDYDRPDRRDDTSRRDRDSRLRVLSPMSQPEEEEYYRRRRGSDENHKDGSPHNEDEDEDEEEFEEARDSLYE ERDQDDHDHDDPDHASSHSNTDTHTHTDVSSHHRPKHRRNPASGISIDSSGNGLPHSRHSHSEPASKDSRWRRRV EQALTKMTAEIAAVREQMEARSIAHRRRSGLLAWVKWMIWVAVRQILFDIAMLGMLLIWMRLRGDRRVENRLKTG WAAVKARLKLLRIVDAPLLP* |
| Coding | >Pro_DTO377G3_2|g1961.t1 ATGTCGGACTCTGTAGATCGAGTCTTTGTTCATGCCCTCAATACCGTTAAGAGGATTCCCCGGACCGGCACCGCG CGACCTCCCGCTGCCGAGCGGTTGGCACTATATGGCTTGTATAAGCAGAGTATGGAGGGGGACGTGGAGGGAGTA ATGGATCGTCCGATTGGGAACACGCCGGAGGTGCACGCGGAGTGCGAGAAATGGGATGCATGGTATGCGCAGCGC GACATATCGCGCACCGAAGCCAAACGCAGGTACATCTCGACGCTGATCCACACCATGCACCAATATGCATCCCAA ACACCCGAAGCACGCGAGCTAGTCGCCGAGCTCGAATTCGTTTGGGACCAGATTAAGTTCAACACCTCGTCGTCG TCGACTTCTAGTCCGGTGAATACAGTCGGCGTCCCGCCGTTATCGCGCAGTGCGTATGGGAGTATCGCGGGTCGA ATGGCGGAGGAGGACTATGATCGTCCTGATCGACGGGATGATACCAGTCGACGAGATCGGGACTCGCGGTTACGG GTTCTCAGTCCTATGAGCCAGCCGGAGGAGGAGGAGTATTATCGGCGGCGGAGGGGGTCTGATGAGAACCATAAG GATGGGAGTCCGCATAATGAGGACGAGGATGAGGATGAGGAGGAGTTTGAGGAAGCCCGTGATAGCTTATACGAA GAACGAGATCAAGACGACCACGATCACGATGACCCGGACCATGCTAGCTCCCACTCCAACACCGACACACATACA CATACCGACGTCTCTTCACATCACCGTCCCAAACATCGTCGCAATCCTGCCTCTGGTATTAGTATAGACAGCAGT GGGAACGGTCTCCCGCATAGTCGACATTCCCATTCAGAGCCAGCTTCGAAAGACAGTCGCTGGCGCCGCCGTGTC GAGCAGGCCTTGACGAAAATGACAGCGGAGATTGCGGCTGTGCGCGAGCAGATGGAAGCTCGGTCTATTGCGCAT CGCCGTCGATCTGGTCTGTTAGCGTGGGTGAAGTGGATGATTTGGGTTGCTGTGCGGCAGATCTTGTTTGATATT GCCATGCTGGGCATGCTGCTTATTTGGATGCGGTTGAGGGGGGATCGTCGTGTTGAGAATCGACTTAAGACGGGC TGGGCGGCGGTTAAGGCGAGGCTTAAGCTCCTGAGGATCGTGGATGCGCCTTTATTGCCATAA |
| Transcript | >Pro_DTO377G3_2|g1961.t1 ATGTCGGACTCTGTAGATCGAGTCTTTGTTCATGCCCTCAATACCGTTAAGAGGATTCCCCGGACCGGCACCGCG CGACCTCCCGCTGCCGAGCGGTTGGCACTATATGGCTTGTATAAGCAGAGTATGGAGGGGGACGTGGAGGGAGTA ATGGATCGTCCGATTGGGAACACGCCGGAGGTGCACGCGGAGTGCGAGAAATGGGATGCATGGTATGCGCAGCGC GACATATCGCGCACCGAAGCCAAACGCAGGTACATCTCGACGCTGATCCACACCATGCACCAATATGCATCCCAA ACACCCGAAGCACGCGAGCTAGTCGCCGAGCTCGAATTCGTTTGGGACCAGATTAAGTTCAACACCTCGTCGTCG TCGACTTCTAGTCCGGTGAATACAGTCGGCGTCCCGCCGTTATCGCGCAGTGCGTATGGGAGTATCGCGGGTCGA ATGGCGGAGGAGGACTATGATCGTCCTGATCGACGGGATGATACCAGTCGACGAGATCGGGACTCGCGGTTACGG GTTCTCAGTCCTATGAGCCAGCCGGAGGAGGAGGAGTATTATCGGCGGCGGAGGGGGTCTGATGAGAACCATAAG GATGGGAGTCCGCATAATGAGGACGAGGATGAGGATGAGGAGGAGTTTGAGGAAGCCCGTGATAGCTTATACGAA GAACGAGATCAAGACGACCACGATCACGATGACCCGGACCATGCTAGCTCCCACTCCAACACCGACACACATACA CATACCGACGTCTCTTCACATCACCGTCCCAAACATCGTCGCAATCCTGCCTCTGGTATTAGTATAGACAGCAGT GGGAACGGTCTCCCGCATAGTCGACATTCCCATTCAGAGCCAGCTTCGAAAGACAGTCGCTGGCGCCGCCGTGTC GAGCAGGCCTTGACGAAAATGACAGCGGAGATTGCGGCTGTGCGCGAGCAGATGGAAGCTCGGTCTATTGCGCAT CGCCGTCGATCTGGTCTGTTAGCGTGGGTGAAGTGGATGATTTGGGTTGCTGTGCGGCAGATCTTGTTTGATATT GCCATGCTGGGCATGCTGCTTATTTGGATGCGGTTGAGGGGGGATCGTCGTGTTGAGAATCGACTTAAGACGGGC TGGGCGGCGGTTAAGGCGAGGCTTAAGCTCCTGAGGATCGTGGATGCGCCTTTATTGCCATAA |
| Gene | >Pro_DTO377G3_2|g1961.t1 ATGTCGGACTCTGTAGGTGCGTGTTGTGCAGATTGCGCCCTGCGTCATGCATCCGGATTTCCACTGACACCCGCT CATCACAGATCGAGTCTTTGTTCATGCCCTCAATACCGTTAAGAGGATTCCCCGGACCGGCACCGCGCGACCTCC CGCTGCCGAGCGGTTGGCACTATATGGCTTGTATAAGCAGAGTATGGGTGAGTGTCCGGCATTACACCTGGAACA ACAACGAGGAAACCGGAGGAGCTAATACTGCATCAGAGGGGGACGTGGAGGGAGTAATGGATCGTCCGATTGGGA ACACGCCGGAGGTGCACGCGGAGTGCGAGAAATGGTATGTCCCGAAGCGCGGGGAAAAAGAAAGCTTTTGATTAT TGTGGATCTTGCTCGGGTCTATGAAACATCGCTTTTCGCTCTACAATCCGACACCACACACACTGACAATGTTCT TGTCTTGTCTAGGGATGCATGGTATGCGCAGCGCGACATATCGCGCACCGAAGCCAAACGCAGGTACATCTCGAC GCTGATCCACACCATGCACCAATATGCATCCCAAACACCCGAAGCACGCGAGCTAGTCGCCGAGCTCGAATTCGT TTGGGACCAGATTAAGTTCAACACCTCGTCGTCGTCGACTTCTAGTCCGGTGAATACAGTCGGCGTCCCGCCGTT ATCGCGCAGTGCGTATGGGAGTATCGCGGGTCGAATGGCGGAGGAGGACTATGATCGTCCTGATCGACGGGATGA TACCAGTCGACGAGATCGGGACTCGCGGTTACGGGTTCTCAGTCCTATGAGCCAGCCGGAGGAGGAGGAGTATTA TCGGCGGCGGAGGGGGTCTGATGAGAACCATAAGGATGGGAGTCCGCATAATGAGGACGAGGATGAGGATGAGGA GGAGTTTGAGGAAGCCCGTGATAGCTTATACGAAGAACGAGATCAAGACGACCACGATCACGATGACCCGGACCA TGCTAGCTCCCACTCCAACACCGACACACATACACATACCGACGTCTCTTCACATCACCGTCCCAAACATCGTCG CAATCCTGCCTCTGGTATTAGTATAGACAGCAGTGGGAACGGTCTCCCGCATAGTCGACATTCCCATTCAGAGCC AGCTTCGAAAGACAGTCGCTGGCGCCGCCGTGTCGAGCAGGCCTTGACGAAAATGACAGCGGAGATTGCGGCTGT GCGCGAGCAGATGGAAGCTCGGTCTATTGCGCATCGCCGTCGATCTGGTCTGTTAGCGTGGGTGAAGTGGATGAT TTGGGTTGCTGTGCGGCAGATCTTGTTTGATATTGCCATGCTGGGCATGCTGCTTATTTGGATGCGGTTGAGGGG GGATCGTCGTGTTGAGAATCGACTTAAGACGGGCTGGGCGGCGGTTAAGGCGAGGCTTAAGCTCCTGAGGATCGT GGATGCGCCTTTATTGCCATAA |