Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1949.t1
Gene name
Locationscaffold_02:1261027..1262346
Strand-
Gene length (bp)1319
Transcript length (bp)1206
Coding sequence length (bp)1206
Protein length (aa) 402

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05383 La La domain 4.6E-22 105 161
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-08 217 265

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 104.11 63.62 144.59
5d_25C Five days - 25 degrees Celsius 87.99 53.64 122.33
7d_25C Seven days - 25 degrees Celsius 82.45 50.08 114.82
10d_25C Ten days - 25 degrees Celsius 71.65 43.06 100.23
7d_15C Seven days - 15 degrees Celsius 90.24 55.05 125.43
7d_30C Seven days - 30 degrees Celsius 81.69 49.54 113.84

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.523070 no
3d_25C 7d_25C 0.336890 no
3d_25C 7d_15C 0.597680 no
3d_25C 7d_30C 0.313947 no
3d_25C 10d_25C 0.088027 no
5d_25C 7d_25C 0.838220 no
5d_25C 7d_15C 0.941011 no
5d_25C 7d_30C 0.811780 no
5d_25C 10d_25C 0.414038 no
7d_25C 7d_15C 0.762033 no
7d_25C 7d_30C 0.980492 no
7d_25C 10d_25C 0.608852 no
7d_15C 7d_30C 0.733264 no
7d_15C 10d_25C 0.349882 no
7d_30C 10d_25C 0.641389 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1949.t1
MTEEQKTPVVNAEAEKDVQNVLAELKEEGTSEKPAQDADEARIVAEAAKLGEKSEKAEEKSTEPQTEKRETRSFQ
RDGRGGRGPRQNNAKFDPSTLEVTDDPVQIRKQVEFYFSDSNLPMDKFLLSKVGGSANNAVPLELLHSFKRMRRF
QPFKAIVEALKTAENVELTENDTAVKRKVPLPESVNEHDAKAVKVFEDASMARSIYAKGFGFGEEEPTTQLDIEA
LFAPYGPTNAIRLRRTNDKTFKGSIFVEFESEEKQKAFLALEKKPQWKENDLIFKSKKEYCDEKVEEIKNGNVYP
SNARNSGGRGGSRGGRGGRGGRGGRGRGGSRGRGGRDRNDRDGGRDWRERRTEDQQNGFQAPREAQKDSRGVPVV
QSTQKRSREDEGTSGDHPAKKVDAKE*
Coding >Pro_DTO377G3_2|g1949.t1
ATGACCGAAGAACAGAAGACCCCCGTTGTCAACGCCGAGGCTGAGAAGGATGTTCAGAATGTTCTCGCCGAGCTG
AAGGAGGAAGGCACCTCCGAGAAGCCTGCTCAGGATGCCGATGAGGCCCGTATTGTCGCCGAAGCCGCTAAGCTC
GGAGAGAAGTCTGAGAAGGCCGAGGAGAAGTCCACAGAGCCCCAGACTGAGAAGCGCGAGACCCGCAGCTTCCAG
CGCGATGGCCGCGGTGGCCGTGGCCCTCGCCAGAACAACGCCAAGTTTGATCCCTCCACCCTAGAGGTAACCGAC
GACCCTGTGCAGATCCGCAAGCAGGTCGAATTCTACTTTTCCGATTCTAACCTCCCAATGGACAAGTTCCTGCTC
TCCAAGGTTGGCGGCAGCGCCAACAACGCCGTCCCCCTTGAACTCCTTCACTCTTTCAAGCGCATGCGCCGCTTC
CAACCTTTCAAGGCAATTGTCGAGGCCCTCAAGACCGCCGAGAACGTCGAACTCACCGAGAACGACACTGCCGTC
AAGCGCAAGGTCCCTCTGCCCGAGTCCGTAAACGAGCACGACGCCAAGGCCGTTAAGGTCTTCGAGGATGCCTCC
ATGGCCCGCTCCATCTACGCCAAGGGCTTCGGCTTTGGCGAGGAAGAACCCACTACACAGCTCGACATCGAGGCT
CTTTTCGCTCCCTACGGTCCTACAAACGCCATCCGTCTGCGCCGCACTAACGACAAGACCTTCAAGGGCAGCATC
TTTGTTGAGTTTGAGTCCGAGGAGAAGCAAAAGGCATTCCTCGCTCTGGAGAAGAAGCCTCAGTGGAAGGAGAAT
GACCTGATCTTCAAGAGCAAGAAGGAGTACTGCGACGAGAAGGTCGAGGAGATCAAGAATGGCAACGTCTACCCC
TCCAACGCTCGCAACAGCGGCGGCCGTGGTGGTAGCCGTGGTGGACGTGGTGGCCGTGGTGGTCGCGGCGGTCGT
GGTCGTGGTGGTAGCCGTGGCCGTGGCGGCCGTGACCGCAATGACCGTGATGGTGGTCGTGACTGGCGCGAACGC
CGCACTGAGGACCAACAGAATGGCTTCCAGGCTCCCCGTGAGGCCCAGAAGGACTCCCGTGGTGTCCCGGTCGTG
CAGAGCACCCAGAAGCGCTCCCGTGAGGACGAGGGCACCAGCGGTGACCACCCTGCCAAGAAGGTGGATGCCAAG
GAATAA
Transcript >Pro_DTO377G3_2|g1949.t1
ATGACCGAAGAACAGAAGACCCCCGTTGTCAACGCCGAGGCTGAGAAGGATGTTCAGAATGTTCTCGCCGAGCTG
AAGGAGGAAGGCACCTCCGAGAAGCCTGCTCAGGATGCCGATGAGGCCCGTATTGTCGCCGAAGCCGCTAAGCTC
GGAGAGAAGTCTGAGAAGGCCGAGGAGAAGTCCACAGAGCCCCAGACTGAGAAGCGCGAGACCCGCAGCTTCCAG
CGCGATGGCCGCGGTGGCCGTGGCCCTCGCCAGAACAACGCCAAGTTTGATCCCTCCACCCTAGAGGTAACCGAC
GACCCTGTGCAGATCCGCAAGCAGGTCGAATTCTACTTTTCCGATTCTAACCTCCCAATGGACAAGTTCCTGCTC
TCCAAGGTTGGCGGCAGCGCCAACAACGCCGTCCCCCTTGAACTCCTTCACTCTTTCAAGCGCATGCGCCGCTTC
CAACCTTTCAAGGCAATTGTCGAGGCCCTCAAGACCGCCGAGAACGTCGAACTCACCGAGAACGACACTGCCGTC
AAGCGCAAGGTCCCTCTGCCCGAGTCCGTAAACGAGCACGACGCCAAGGCCGTTAAGGTCTTCGAGGATGCCTCC
ATGGCCCGCTCCATCTACGCCAAGGGCTTCGGCTTTGGCGAGGAAGAACCCACTACACAGCTCGACATCGAGGCT
CTTTTCGCTCCCTACGGTCCTACAAACGCCATCCGTCTGCGCCGCACTAACGACAAGACCTTCAAGGGCAGCATC
TTTGTTGAGTTTGAGTCCGAGGAGAAGCAAAAGGCATTCCTCGCTCTGGAGAAGAAGCCTCAGTGGAAGGAGAAT
GACCTGATCTTCAAGAGCAAGAAGGAGTACTGCGACGAGAAGGTCGAGGAGATCAAGAATGGCAACGTCTACCCC
TCCAACGCTCGCAACAGCGGCGGCCGTGGTGGTAGCCGTGGTGGACGTGGTGGCCGTGGTGGTCGCGGCGGTCGT
GGTCGTGGTGGTAGCCGTGGCCGTGGCGGCCGTGACCGCAATGACCGTGATGGTGGTCGTGACTGGCGCGAACGC
CGCACTGAGGACCAACAGAATGGCTTCCAGGCTCCCCGTGAGGCCCAGAAGGACTCCCGTGGTGTCCCGGTCGTG
CAGAGCACCCAGAAGCGCTCCCGTGAGGACGAGGGCACCAGCGGTGACCACCCTGCCAAGAAGGTGGATGCCAAG
GAATAA
Gene >Pro_DTO377G3_2|g1949.t1
ATGACCGAAGAACAGAAGACCCCCGTTGTCAACGCCGAGGCTGAGAAGGATGTTCAGAATGTTCTCGCCGAGCTG
AAGGAGGAAGGCACCTCCGAGAAGCCTGCTCAGGATGCCGATGAGGCCCGTATTGTCGCCGAAGCCGCTAAGCTC
GGAGAGAAGTCTGAGAAGGCCGAGGAGAAGTCCACAGAGCCCCAGACTGAGAAGCGCGAGACCCGCAGCTTCCAG
CGCGATGGCCGCGGTGGCCGTGGCCCTCGCCAGAACAACGCCAAGTTTGATCCCTCCACCCTAGAGGTAACCGAC
GACCCTGTGCAGATCCGCAAGCAGGTATGACCATTTGAAACGCTCCTTCACTAGATCTTAACTGACGCGCATACC
GTAGGTCGAATTCTACTTTTCCGATTCTAACCTCCCAATGGACAAGTTCCTGCTCTCCAAGGTTGGCGGCAGCGC
CAACAACGCCGTCCCCCTTGAACTCCTTCACTCTTTCAAGCGCATGCGCCGCTTCCAACCTTTCAAGGCAATTGT
CGAGGCCCTCAAGACCGCCGAGAACGTCGAACTCACCGAGAACGACACTGCCGTCAAGCGCAAGGTCCCTCTGCC
CGAGTCCGTAAACGAGCACGACGCCAAGGCCGTTAAGGTCTTCGAGGATGCCTCCATGGCCCGCTCCATCTACGC
CAAGGGCTTCGGCTTTGGCGAGGAAGAACCCACTACACAGCTCGACATCGAGGCTCTTTTCGCTCCCTACGGTCC
TACAAACGCCATCCGTCTGCGCCGCACTAACGACAAGACCTTCAAGGGCAGCATCTTTGTTGAGTTTGAGTCCGA
GGAGAAGCAAAAGGCATTCCTCGCTCTGGAGAAGAAGCCTCAGTGGAAGGAGAATGACCTGATCTTCAAGAGCAA
GAAGGAGTACTGCGACGAGAAGGTCGAGGAGATCAAGAATGGCAACGTCTACCCCTCCAACGCTCGCAACAGCGG
CGGCCGTGGTGGTAGCCGTGGTGGACGTGGTGGCCGTGGTGGTCGCGGCGGTCGTGGTCGTGGTGGTAGCCGTGG
CCGTGGCGGCCGTGACCGCAATGACCGTGATGGTGGTCGTGACTGGCGCGAACGCCGCACTGAGGACCAACAGAA
TGGCTTCCAGGCTCCCCGTGAGGCCCAGAAGGACTCCCGGTAAGTCATAGTGATCTGATATTCGCAGTGAGTGTA
TAAGTGCTGACTTCAATTCTAGTGGTGTCCCGGTCGTGCAGAGCACCCAGAAGCGCTCCCGTGAGGACGAGGGCA
CCAGCGGTGACCACCCTGCCAAGAAGGTGGATGCCAAGGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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