© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1949.t1 |
| Gene name | |
| Location | scaffold_02:1261027..1262346 |
| Strand | - |
| Gene length (bp) | 1319 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05383 | La | La domain | 4.6E-22 | 105 | 161 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.6E-08 | 217 | 265 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1949.t1 MTEEQKTPVVNAEAEKDVQNVLAELKEEGTSEKPAQDADEARIVAEAAKLGEKSEKAEEKSTEPQTEKRETRSFQ RDGRGGRGPRQNNAKFDPSTLEVTDDPVQIRKQVEFYFSDSNLPMDKFLLSKVGGSANNAVPLELLHSFKRMRRF QPFKAIVEALKTAENVELTENDTAVKRKVPLPESVNEHDAKAVKVFEDASMARSIYAKGFGFGEEEPTTQLDIEA LFAPYGPTNAIRLRRTNDKTFKGSIFVEFESEEKQKAFLALEKKPQWKENDLIFKSKKEYCDEKVEEIKNGNVYP SNARNSGGRGGSRGGRGGRGGRGGRGRGGSRGRGGRDRNDRDGGRDWRERRTEDQQNGFQAPREAQKDSRGVPVV QSTQKRSREDEGTSGDHPAKKVDAKE* |
| Coding | >Pro_DTO377G3_2|g1949.t1 ATGACCGAAGAACAGAAGACCCCCGTTGTCAACGCCGAGGCTGAGAAGGATGTTCAGAATGTTCTCGCCGAGCTG AAGGAGGAAGGCACCTCCGAGAAGCCTGCTCAGGATGCCGATGAGGCCCGTATTGTCGCCGAAGCCGCTAAGCTC GGAGAGAAGTCTGAGAAGGCCGAGGAGAAGTCCACAGAGCCCCAGACTGAGAAGCGCGAGACCCGCAGCTTCCAG CGCGATGGCCGCGGTGGCCGTGGCCCTCGCCAGAACAACGCCAAGTTTGATCCCTCCACCCTAGAGGTAACCGAC GACCCTGTGCAGATCCGCAAGCAGGTCGAATTCTACTTTTCCGATTCTAACCTCCCAATGGACAAGTTCCTGCTC TCCAAGGTTGGCGGCAGCGCCAACAACGCCGTCCCCCTTGAACTCCTTCACTCTTTCAAGCGCATGCGCCGCTTC CAACCTTTCAAGGCAATTGTCGAGGCCCTCAAGACCGCCGAGAACGTCGAACTCACCGAGAACGACACTGCCGTC AAGCGCAAGGTCCCTCTGCCCGAGTCCGTAAACGAGCACGACGCCAAGGCCGTTAAGGTCTTCGAGGATGCCTCC ATGGCCCGCTCCATCTACGCCAAGGGCTTCGGCTTTGGCGAGGAAGAACCCACTACACAGCTCGACATCGAGGCT CTTTTCGCTCCCTACGGTCCTACAAACGCCATCCGTCTGCGCCGCACTAACGACAAGACCTTCAAGGGCAGCATC TTTGTTGAGTTTGAGTCCGAGGAGAAGCAAAAGGCATTCCTCGCTCTGGAGAAGAAGCCTCAGTGGAAGGAGAAT GACCTGATCTTCAAGAGCAAGAAGGAGTACTGCGACGAGAAGGTCGAGGAGATCAAGAATGGCAACGTCTACCCC TCCAACGCTCGCAACAGCGGCGGCCGTGGTGGTAGCCGTGGTGGACGTGGTGGCCGTGGTGGTCGCGGCGGTCGT GGTCGTGGTGGTAGCCGTGGCCGTGGCGGCCGTGACCGCAATGACCGTGATGGTGGTCGTGACTGGCGCGAACGC CGCACTGAGGACCAACAGAATGGCTTCCAGGCTCCCCGTGAGGCCCAGAAGGACTCCCGTGGTGTCCCGGTCGTG CAGAGCACCCAGAAGCGCTCCCGTGAGGACGAGGGCACCAGCGGTGACCACCCTGCCAAGAAGGTGGATGCCAAG GAATAA |
| Transcript | >Pro_DTO377G3_2|g1949.t1 ATGACCGAAGAACAGAAGACCCCCGTTGTCAACGCCGAGGCTGAGAAGGATGTTCAGAATGTTCTCGCCGAGCTG AAGGAGGAAGGCACCTCCGAGAAGCCTGCTCAGGATGCCGATGAGGCCCGTATTGTCGCCGAAGCCGCTAAGCTC GGAGAGAAGTCTGAGAAGGCCGAGGAGAAGTCCACAGAGCCCCAGACTGAGAAGCGCGAGACCCGCAGCTTCCAG CGCGATGGCCGCGGTGGCCGTGGCCCTCGCCAGAACAACGCCAAGTTTGATCCCTCCACCCTAGAGGTAACCGAC GACCCTGTGCAGATCCGCAAGCAGGTCGAATTCTACTTTTCCGATTCTAACCTCCCAATGGACAAGTTCCTGCTC TCCAAGGTTGGCGGCAGCGCCAACAACGCCGTCCCCCTTGAACTCCTTCACTCTTTCAAGCGCATGCGCCGCTTC CAACCTTTCAAGGCAATTGTCGAGGCCCTCAAGACCGCCGAGAACGTCGAACTCACCGAGAACGACACTGCCGTC AAGCGCAAGGTCCCTCTGCCCGAGTCCGTAAACGAGCACGACGCCAAGGCCGTTAAGGTCTTCGAGGATGCCTCC ATGGCCCGCTCCATCTACGCCAAGGGCTTCGGCTTTGGCGAGGAAGAACCCACTACACAGCTCGACATCGAGGCT CTTTTCGCTCCCTACGGTCCTACAAACGCCATCCGTCTGCGCCGCACTAACGACAAGACCTTCAAGGGCAGCATC TTTGTTGAGTTTGAGTCCGAGGAGAAGCAAAAGGCATTCCTCGCTCTGGAGAAGAAGCCTCAGTGGAAGGAGAAT GACCTGATCTTCAAGAGCAAGAAGGAGTACTGCGACGAGAAGGTCGAGGAGATCAAGAATGGCAACGTCTACCCC TCCAACGCTCGCAACAGCGGCGGCCGTGGTGGTAGCCGTGGTGGACGTGGTGGCCGTGGTGGTCGCGGCGGTCGT GGTCGTGGTGGTAGCCGTGGCCGTGGCGGCCGTGACCGCAATGACCGTGATGGTGGTCGTGACTGGCGCGAACGC CGCACTGAGGACCAACAGAATGGCTTCCAGGCTCCCCGTGAGGCCCAGAAGGACTCCCGTGGTGTCCCGGTCGTG CAGAGCACCCAGAAGCGCTCCCGTGAGGACGAGGGCACCAGCGGTGACCACCCTGCCAAGAAGGTGGATGCCAAG GAATAA |
| Gene | >Pro_DTO377G3_2|g1949.t1 ATGACCGAAGAACAGAAGACCCCCGTTGTCAACGCCGAGGCTGAGAAGGATGTTCAGAATGTTCTCGCCGAGCTG AAGGAGGAAGGCACCTCCGAGAAGCCTGCTCAGGATGCCGATGAGGCCCGTATTGTCGCCGAAGCCGCTAAGCTC GGAGAGAAGTCTGAGAAGGCCGAGGAGAAGTCCACAGAGCCCCAGACTGAGAAGCGCGAGACCCGCAGCTTCCAG CGCGATGGCCGCGGTGGCCGTGGCCCTCGCCAGAACAACGCCAAGTTTGATCCCTCCACCCTAGAGGTAACCGAC GACCCTGTGCAGATCCGCAAGCAGGTATGACCATTTGAAACGCTCCTTCACTAGATCTTAACTGACGCGCATACC GTAGGTCGAATTCTACTTTTCCGATTCTAACCTCCCAATGGACAAGTTCCTGCTCTCCAAGGTTGGCGGCAGCGC CAACAACGCCGTCCCCCTTGAACTCCTTCACTCTTTCAAGCGCATGCGCCGCTTCCAACCTTTCAAGGCAATTGT CGAGGCCCTCAAGACCGCCGAGAACGTCGAACTCACCGAGAACGACACTGCCGTCAAGCGCAAGGTCCCTCTGCC CGAGTCCGTAAACGAGCACGACGCCAAGGCCGTTAAGGTCTTCGAGGATGCCTCCATGGCCCGCTCCATCTACGC CAAGGGCTTCGGCTTTGGCGAGGAAGAACCCACTACACAGCTCGACATCGAGGCTCTTTTCGCTCCCTACGGTCC TACAAACGCCATCCGTCTGCGCCGCACTAACGACAAGACCTTCAAGGGCAGCATCTTTGTTGAGTTTGAGTCCGA GGAGAAGCAAAAGGCATTCCTCGCTCTGGAGAAGAAGCCTCAGTGGAAGGAGAATGACCTGATCTTCAAGAGCAA GAAGGAGTACTGCGACGAGAAGGTCGAGGAGATCAAGAATGGCAACGTCTACCCCTCCAACGCTCGCAACAGCGG CGGCCGTGGTGGTAGCCGTGGTGGACGTGGTGGCCGTGGTGGTCGCGGCGGTCGTGGTCGTGGTGGTAGCCGTGG CCGTGGCGGCCGTGACCGCAATGACCGTGATGGTGGTCGTGACTGGCGCGAACGCCGCACTGAGGACCAACAGAA TGGCTTCCAGGCTCCCCGTGAGGCCCAGAAGGACTCCCGGTAAGTCATAGTGATCTGATATTCGCAGTGAGTGTA TAAGTGCTGACTTCAATTCTAGTGGTGTCCCGGTCGTGCAGAGCACCCAGAAGCGCTCCCGTGAGGACGAGGGCA CCAGCGGTGACCACCCTGCCAAGAAGGTGGATGCCAAGGAATAA |