Protein ID | Pro_DTO377G3_2|g1931.t1 |
Gene name | |
Location | scaffold_02:1202024..1203061 |
Strand | - |
Gene length (bp) | 1037 |
Transcript length (bp) | 987 |
Coding sequence length (bp) | 987 |
Protein length (aa) | 329 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00188 | CAP | Cysteine-rich secretory protein family | 2.8E-17 | 177 | 309 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 17 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 143.23 | 84.84 | 201.62 |
5d_25C | Five days - 25 degrees Celsius | 104.73 | 60.22 | 149.23 |
7d_25C | Seven days - 25 degrees Celsius | 85.63 | 49.00 | 122.26 |
10d_25C | Ten days - 25 degrees Celsius | 76.02 | 41.75 | 110.28 |
7d_15C | Seven days - 15 degrees Celsius | 107.72 | 49.61 | 165.82 |
7d_30C | Seven days - 30 degrees Celsius | 104.80 | 58.40 | 151.19 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.182833 | no |
3d_25C | 7d_25C | 0.016098 | yes |
3d_25C | 7d_15C | 0.316786 | no |
3d_25C | 7d_30C | 0.197494 | no |
3d_25C | 10d_25C | 0.002761 | yes |
5d_25C | 7d_25C | 0.457004 | no |
5d_25C | 7d_15C | 0.944827 | no |
5d_25C | 7d_30C | 0.998176 | no |
5d_25C | 10d_25C | 0.196290 | no |
7d_25C | 7d_15C | 0.448082 | no |
7d_25C | 7d_30C | 0.456762 | no |
7d_25C | 10d_25C | 0.703699 | no |
7d_15C | 7d_30C | 0.947827 | no |
7d_15C | 10d_25C | 0.220194 | no |
7d_30C | 10d_25C | 0.199147 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g1931.t1 MRSAVIVAALAVGTCARVIEKEVYVTQWTTTTVTETITQWPTSTSTLNTAVLVKQSTKTANAAHPTVDVSRKEVE SAPAAASTTTAAGVEAVEPSSATSSTSSSTTSSIVPSSTTEAEIVAVTSSATSVATSSEAPATVAPTTTAAATTS VATSSATSTTAAAATSSSTDSYQESILYYHNIHRSAHSVGDLTWSDDLAGAANTLASRCVYGHDTSIVSASGDYG QNIAYGYDAAEVGEKIISGMMYTDEAPYFANLYGEANPDMTNFEKWGHFTQIVWKATTQVGCATVSCSDLGNVGS AAPYTVCNYGSPGNYAGEYADNVLKPTS* |
Coding | >Pro_DTO377G3_2|g1931.t1 ATGCGTTCTGCTGTCATCGTTGCCGCCTTGGCGGTCGGCACTTGTGCCAGAGTTATTGAGAAGGAGGTTTACGTG ACCCAGTGGACTACCACCACCGTCACCGAAACCATCACCCAGTGGCCCACCAGCACCAGCACCCTCAACACTGCT GTTTTGGTCAAGCAGTCCACCAAGACCGCCAACGCCGCCCACCCCACTGTCGATGTTTCCAGGAAGGAGGTCGAG TCTGCCCCTGCTGCGGCTTCGACTACTACTGCCGCCGGGGTTGAGGCTGTGGAACCCAGTAGCGCGACCAGCTCA ACCTCGTCTTCGACCACCTCTTCGATCGTCCCATCTTCGACTACTGAGGCTGAAATCGTGGCCGTGACCTCCTCG GCTACCTCCGTCGCTACCTCTTCGGAAGCCCCGGCCACCGTCGCCCCGACCACCACCGCCGCTGCTACCACCTCC GTCGCGACCTCTTCGGCAACCTCGACCACCGCCGCTGCTGCCACCTCCAGCTCTACCGACTCCTACCAGGAGTCC ATTCTGTACTACCACAACATCCACCGTAGCGCGCACTCTGTAGGCGATCTGACCTGGTCCGATGACCTCGCCGGA GCTGCCAACACCCTCGCCTCTCGTTGCGTGTACGGACACGACACTTCCATCGTGTCCGCCAGCGGAGACTACGGC CAGAACATCGCCTACGGTTACGACGCGGCAGAGGTCGGTGAGAAGATTATCAGCGGAATGATGTACACCGATGAG GCGCCATACTTCGCCAACCTCTACGGTGAGGCCAACCCTGATATGACCAACTTCGAGAAGTGGGGCCACTTCACT CAGATCGTCTGGAAAGCTACCACTCAAGTTGGTTGCGCCACCGTCAGCTGCTCTGACTTGGGCAATGTTGGCAGC GCCGCGCCTTACACTGTCTGCAACTATGGCTCCCCTGGTAACTACGCCGGCGAGTATGCCGACAACGTCTTGAAG CCCACTTCATAA |
Transcript | >Pro_DTO377G3_2|g1931.t1 ATGCGTTCTGCTGTCATCGTTGCCGCCTTGGCGGTCGGCACTTGTGCCAGAGTTATTGAGAAGGAGGTTTACGTG ACCCAGTGGACTACCACCACCGTCACCGAAACCATCACCCAGTGGCCCACCAGCACCAGCACCCTCAACACTGCT GTTTTGGTCAAGCAGTCCACCAAGACCGCCAACGCCGCCCACCCCACTGTCGATGTTTCCAGGAAGGAGGTCGAG TCTGCCCCTGCTGCGGCTTCGACTACTACTGCCGCCGGGGTTGAGGCTGTGGAACCCAGTAGCGCGACCAGCTCA ACCTCGTCTTCGACCACCTCTTCGATCGTCCCATCTTCGACTACTGAGGCTGAAATCGTGGCCGTGACCTCCTCG GCTACCTCCGTCGCTACCTCTTCGGAAGCCCCGGCCACCGTCGCCCCGACCACCACCGCCGCTGCTACCACCTCC GTCGCGACCTCTTCGGCAACCTCGACCACCGCCGCTGCTGCCACCTCCAGCTCTACCGACTCCTACCAGGAGTCC ATTCTGTACTACCACAACATCCACCGTAGCGCGCACTCTGTAGGCGATCTGACCTGGTCCGATGACCTCGCCGGA GCTGCCAACACCCTCGCCTCTCGTTGCGTGTACGGACACGACACTTCCATCGTGTCCGCCAGCGGAGACTACGGC CAGAACATCGCCTACGGTTACGACGCGGCAGAGGTCGGTGAGAAGATTATCAGCGGAATGATGTACACCGATGAG GCGCCATACTTCGCCAACCTCTACGGTGAGGCCAACCCTGATATGACCAACTTCGAGAAGTGGGGCCACTTCACT CAGATCGTCTGGAAAGCTACCACTCAAGTTGGTTGCGCCACCGTCAGCTGCTCTGACTTGGGCAATGTTGGCAGC GCCGCGCCTTACACTGTCTGCAACTATGGCTCCCCTGGTAACTACGCCGGCGAGTATGCCGACAACGTCTTGAAG CCCACTTCATAA |
Gene | >Pro_DTO377G3_2|g1931.t1 ATGCGTTCTGCTGTCATCGTTGCCGCCTTGGCGGTCGGCACTTGTGCCAGAGTTATTGAGAAGGAGGTTTACGTG ACCCAGTGGACTACCACCACCGTCACCGAAACCATCACCCAGTGGCCCACCAGCACCAGCACCCTCAACACTGCT GTTTTGGTCAAGCAGTCCACCAAGACCGCCAACGCCGCCCACCCCACTGTCGATGTTTCCAGGAAGGAGGTCGAG TCTGCCCCTGCTGCGGCTTCGACTACTACTGCCGCCGGGGTTGAGGCTGTGGAACCCAGTAGCGCGACCAGCTCA ACCTCGTCTTCGACCACCTCTTCGATCGTCCCATCTTCGACTACTGAGGCTGAAATCGTGGCCGTGACCTCCTCG GCTACCTCCGTCGCTACCTCTTCGGAAGCCCCGGCCACCGTCGCCCCGACCACCACCGCCGCTGCTACCACCTCC GTCGCGACCTCTTCGGCAACCTCGACCACCGCCGCTGCTGCCACCTCCAGCTCTACCGACTCCTACCAGGAGTCC ATTCTGTACTACCACAACATCCACCGTAGCGCGCACTCTGTAGGCGATCTGACCTGGTCCGATGACCTCGCCGGA GCTGCCAACACCCTCGCCTCTCGTTGCGTGTACGGACACGACACGTAAGTATTCCTCTGTTTTGCTTGAGAAACA ATAATCCTAACGTGACTAGTTCCATCGTGTCCGCCAGCGGAGACTACGGCCAGAACATCGCCTACGGTTACGACG CGGCAGAGGTCGGTGAGAAGATTATCAGCGGAATGATGTACACCGATGAGGCGCCATACTTCGCCAACCTCTACG GTGAGGCCAACCCTGATATGACCAACTTCGAGAAGTGGGGCCACTTCACTCAGATCGTCTGGAAAGCTACCACTC AAGTTGGTTGCGCCACCGTCAGCTGCTCTGACTTGGGCAATGTTGGCAGCGCCGCGCCTTACACTGTCTGCAACT ATGGCTCCCCTGGTAACTACGCCGGCGAGTATGCCGACAACGTCTTGAAGCCCACTTCATAA |