© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1927.t1 |
| Gene name | |
| Location | scaffold_02:1193610..1194758 |
| Strand | + |
| Gene length (bp) | 1148 |
| Transcript length (bp) | 966 |
| Coding sequence length (bp) | 966 |
| Protein length (aa) | 322 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 1.2E-66 | 64 | 281 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 93 | 112 | 19 |
| 3 | 133 | 155 | 22 |
| 4 | 170 | 192 | 22 |
| 5 | 216 | 238 | 22 |
| 6 | 258 | 280 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1927.t1 MVEIRAAAKCTEVTPQCPVEGTIYGYAPDLVFSVEFCLIFGACSLIQLGQMIRWRLWSFSIAVILGSSTEVIGYF GRILLNRNPYSSAGFKTQICTLTLAPAFWSAAIYLTLKHAVNILGQQNSALRAKWYPYLFVTCDTVSLILQGAGG GLAAAAKTTKASDMGSNVMLAGIVWQVVTLTIFGVMSGHFLLRIKNAPKDGLTVEARKVWNSRNFWVFFWGICVA FITTYVRCVYRIAEMAGGWKNHIMQNELDFTILESIMCSVSVIALCITPPGYFFPQMRGDYTRLVKEVDVKEMKD VKDVKVSISLWPEPPRYQEFI* |
| Coding | >Pro_DTO377G3_2|g1927.t1 ATGGTTGAAATCCGCGCTGCAGCCAAATGTACGGAGGTGACTCCTCAATGTCCAGTCGAGGGCACCATCTACGGC TACGCACCTGATCTTGTATTCAGCGTTGAGTTCTGTTTGATATTCGGTGCTTGTTCTCTGATACAACTCGGCCAG ATGATCAGATGGCGGCTTTGGTCTTTTAGTATTGCCGTGATTCTCGGTTCTTCGACTGAAGTGATTGGCTATTTT GGTCGTATATTGTTGAACCGGAACCCATATTCATCCGCCGGCTTTAAGACGCAGATTTGCACTTTGACACTGGCA CCCGCTTTCTGGTCGGCAGCTATATACCTCACGCTGAAGCATGCAGTGAACATTCTGGGGCAACAAAACTCCGCA CTGAGGGCGAAGTGGTATCCCTACCTCTTTGTCACCTGCGATACCGTTTCGTTGATTCTCCAAGGCGCTGGTGGT GGGCTTGCGGCAGCAGCTAAAACAACCAAAGCTAGTGATATGGGCAGCAATGTCATGCTGGCCGGGATTGTTTGG CAAGTGGTCACCTTGACGATATTTGGGGTGATGTCGGGCCACTTTCTTCTCCGTATAAAGAACGCCCCAAAAGAT GGATTGACGGTTGAGGCCCGAAAAGTCTGGAACAGTCGCAATTTCTGGGTATTCTTTTGGGGTATCTGTGTGGCA TTCATAACAACTTATGTCCGTTGTGTGTATCGCATCGCGGAAATGGCTGGTGGGTGGAAAAATCACATAATGCAG AACGAACTTGATTTTACTATCCTTGAATCGATAATGTGTTCAGTCTCTGTGATAGCCCTATGTATCACCCCTCCT GGGTATTTCTTCCCGCAAATGCGTGGAGATTACACTAGATTAGTGAAAGAAGTGGATGTGAAGGAAATGAAGGAT GTGAAAGATGTGAAGGTCTCTATTTCACTGTGGCCAGAGCCACCACGCTATCAGGAATTTATTTGA |
| Transcript | >Pro_DTO377G3_2|g1927.t1 ATGGTTGAAATCCGCGCTGCAGCCAAATGTACGGAGGTGACTCCTCAATGTCCAGTCGAGGGCACCATCTACGGC TACGCACCTGATCTTGTATTCAGCGTTGAGTTCTGTTTGATATTCGGTGCTTGTTCTCTGATACAACTCGGCCAG ATGATCAGATGGCGGCTTTGGTCTTTTAGTATTGCCGTGATTCTCGGTTCTTCGACTGAAGTGATTGGCTATTTT GGTCGTATATTGTTGAACCGGAACCCATATTCATCCGCCGGCTTTAAGACGCAGATTTGCACTTTGACACTGGCA CCCGCTTTCTGGTCGGCAGCTATATACCTCACGCTGAAGCATGCAGTGAACATTCTGGGGCAACAAAACTCCGCA CTGAGGGCGAAGTGGTATCCCTACCTCTTTGTCACCTGCGATACCGTTTCGTTGATTCTCCAAGGCGCTGGTGGT GGGCTTGCGGCAGCAGCTAAAACAACCAAAGCTAGTGATATGGGCAGCAATGTCATGCTGGCCGGGATTGTTTGG CAAGTGGTCACCTTGACGATATTTGGGGTGATGTCGGGCCACTTTCTTCTCCGTATAAAGAACGCCCCAAAAGAT GGATTGACGGTTGAGGCCCGAAAAGTCTGGAACAGTCGCAATTTCTGGGTATTCTTTTGGGGTATCTGTGTGGCA TTCATAACAACTTATGTCCGTTGTGTGTATCGCATCGCGGAAATGGCTGGTGGGTGGAAAAATCACATAATGCAG AACGAACTTGATTTTACTATCCTTGAATCGATAATGTGTTCAGTCTCTGTGATAGCCCTATGTATCACCCCTCCT GGGTATTTCTTCCCGCAAATGCGTGGAGATTACACTAGATTAGTGAAAGAAGTGGATGTGAAGGAAATGAAGGAT GTGAAAGATGTGAAGGTCTCTATTTCACTGTGGCCAGAGCCACCACGCTATCAGGAATTTATTTGA |
| Gene | >Pro_DTO377G3_2|g1927.t1 ATGGTTGAAATCCGCGCTGCAGCCAAATGTACGGAGGTGACTCCTCAATGTCCAGTCGAGGGCACCATCTACGGC TACGCACCTGATCTTGTATTCAGCGTTGAGTTCTGTTTGATATTCGGTGCTTGTTCTCTGATACAACTCGGCCAG ATGATCAGATGGCGGCTTTGGTCTTTTAGTATTGCCGTGATTCTCGGTTCTTCGACTGAAGTGATTGGTAAGTCA AATTGAAACTCTATGAGAATCACTGGAGACTGCCCGGGAGAATACTGATAAAAGAAACAGGCTATTTTGGTCGTA TATTGTTGAACCGGAACCCATATTCATCCGCCGGCTTTAAGACGCAGATTTGCACTTTGACACTGGCACCCGCTT TCTGGTCGGCAGCTATATACCTCACGCTGAAGCATGCAGTGAACATTCTGGGGCAACAAAACTCCGCACTGAGGG CGAAGTGGTATCCCTACCTCTTTGTCACCTGCGATACCGTTTCGTTGATTCTCCAAGGCGCTGGTGGTGGGCTTG CGGCAGCAGCTAAAACAACCAAAGCTAGTGATATGGGCAGCAATGTCATGCTGGCCGGGATTGTTTGGCAAGTGG TCACCTTGACGATATTTGGGGTGATGTCGGGCCACTTTCTTCTCCGTATAAAGAACGCCCCAAAAGATGGATTGA CGGTTGAGGCCCGAAAAGTCTGGAACAGTCGCAATTTCTGGGTATTCTTTTGGGGTATCTGTGTGGCATTCATAA CAACTTATGTCCGTTGTGTGTATCGGTAAGTCACTGGTGATACTATCTTGATATCTGCTGAGTACTGATATTGGA GTGTCTAGCATCGCGGAAATGGCTGGTGGGTGGAAAAATCACATAATGCAGAACGAACTTGATTTTACTATCCTT GAATCGATGTAAGTCGAACTTTGACAACACAAATTGGAAGCATTTGAAAGCTGATGGATCCTAGAATGTGTTCAG TCTCTGTGATAGCCCTATGTATCACCCCTCCTGGGTATTTCTTCCCGCAAATGCGTGGAGATTACACTAGATTAG TGAAAGAAGTGGATGTGAAGGAAATGAAGGATGTGAAAGATGTGAAGGTCTCTATTTCACTGTGGCCAGAGCCAC CACGCTATCAGGAATTTATTTGA |