Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1924.t1
Gene name
Locationscaffold_02:1190811..1191149
Strand+
Gene length (bp)338
Transcript length (bp)273
Coding sequence length (bp)273
Protein length (aa) 91

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11976 Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 4.7E-20 16 81
PF00240 ubiquitin Ubiquitin family 5.8E-11 15 85

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1924.t1
MSDKEGAAPPTEHLNIKVTDNNNEVFFKIKRTTQLKKLMDAFCERQGKQMSTVRFLFDGTRVRPEDSPDTLDMAD
GDTLEVHQEQIGGGC*
Coding >Pro_DTO377G3_2|g1924.t1
ATGTCCGACAAAGAAGGCGCTGCTCCTCCCACCGAGCACCTGAACATCAAGGTGACCGATAACAACAACGAGGTG
TTCTTTAAGATTAAGCGCACAACGCAGCTGAAAAAGCTCATGGACGCCTTCTGCGAGCGCCAGGGCAAGCAAATG
TCCACTGTTCGGTTCCTTTTCGACGGCACCAGGGTTCGCCCCGAAGATTCTCCCGACACTCTCGATATGGCAGAT
GGTGATACCTTGGAGGTGCACCAAGAGCAAATCGGAGGAGGTTGCTAG
Transcript >Pro_DTO377G3_2|g1924.t1
ATGTCCGACAAAGAAGGCGCTGCTCCTCCCACCGAGCACCTGAACATCAAGGTGACCGATAACAACAACGAGGTG
TTCTTTAAGATTAAGCGCACAACGCAGCTGAAAAAGCTCATGGACGCCTTCTGCGAGCGCCAGGGCAAGCAAATG
TCCACTGTTCGGTTCCTTTTCGACGGCACCAGGGTTCGCCCCGAAGATTCTCCCGACACTCTCGATATGGCAGAT
GGTGATACCTTGGAGGTGCACCAAGAGCAAATCGGAGGAGGTTGCTAG
Gene >Pro_DTO377G3_2|g1924.t1
ATGTCCGACAAAGAAGGCGCTGCTCCTCCCACCGAGCACCTGAACATCAAGGTGACCGATAACAACAACGAGGTG
TTCTTTAAGATTAAGCGCACAACGCAGCTGAAAAAGCTCATGGACGCCTTCTGCGAGCGCCAGGGCAAGCAAATG
TCCACTGTTCGGTTCCTTTTCGACGGCACCAGGGTTCGCCCCGAAGATTCTCCCGACACTGTACGGCCATTCCCT
TCTTTCGTCATTTATTAGTATCTCGAAATCTTGAAACTAACTTCAAATAGCTCGATATGGCAGATGGTGATACCT
TGGAGGTGCACCAAGAGCAAATCGGAGGAGGTTGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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