© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1918.t1 |
| Gene name | |
| Location | scaffold_02:1170135..1171570 |
| Strand | - |
| Gene length (bp) | 1435 |
| Transcript length (bp) | 1260 |
| Coding sequence length (bp) | 1260 |
| Protein length (aa) | 420 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09995 | MPAB_Lcp_cat | ER-bound oxygenase mpaB/B'/Rubber oxygenase, catalytic domain | 5.2E-07 | 107 | 290 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 256 | 278 | 22 |
| 3 | 293 | 310 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 23.49 | 11.75 | 35.24 |
| 5d_25C | Five days - 25 degrees Celsius | 43.49 | 24.46 | 62.52 |
| 7d_25C | Seven days - 25 degrees Celsius | 57.50 | 33.96 | 81.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 71.04 | 41.93 | 100.15 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.43 | 22.03 | 56.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 57.22 | 33.92 | 80.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.016924 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.043601 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.277165 | no |
| 5d_25C | 7d_15C | 0.767736 | no |
| 5d_25C | 7d_30C | 0.281570 | no |
| 5d_25C | 10d_25C | 0.030434 | yes |
| 7d_25C | 7d_15C | 0.102709 | no |
| 7d_25C | 7d_30C | 0.989883 | no |
| 7d_25C | 10d_25C | 0.411079 | no |
| 7d_15C | 7d_30C | 0.112852 | no |
| 7d_15C | 10d_25C | 0.006000 | yes |
| 7d_30C | 10d_25C | 0.398053 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1918.t1 MNYTDALASLQAGGMTTQLLPYAVGLLIAWPVVTTSLRFQRLRKLHKQYAYPTRESMSKMTDEEAFQIQKQVAQL EFPFIFIKSLQFALFRTYGIPSISRLLAKTTQFSNPDTSLKRYTDTSLLVQEWVGNNPTSMRACLGLARTRYLHS GYRASGKILDDDMLFTLALFALQPIRFIDRYEWRKLSDLERCAIGTFWKSAGDALDISYEKLPSGKVGFQDGIQW LEELTAWADEYEVRCMVPDIKNRETADQTTAVLLYMLPKVFHPAGLQAVSFMMDDRLRKAMFYEPPSAFCTALLS TIFTARRLFLRYLSLPRPYFMRFASSTEEPDENDRFFLTEWEAAPYYVKPTFWNRWGPMALLTRAIGRAVPGDEG DKYYPTGYSVADIGPKYFEGKGRKQLEETLVEFKEYRTGKCPFH* |
| Coding | >Pro_DTO377G3_2|g1918.t1 ATGAATTACACCGATGCCCTGGCTTCACTACAAGCAGGGGGTATGACAACCCAACTACTCCCCTACGCCGTAGGC CTCCTCATCGCCTGGCCGGTAGTAACAACAAGCCTCCGATTCCAACGCCTGCGCAAGCTCCACAAACAATATGCC TATCCAACACGGGAGTCAATGTCCAAAATGACCGACGAAGAAGCCTTCCAGATCCAAAAACAAGTCGCGCAGCTC GAATTCCCATTCATATTCATCAAGAGCTTACAATTCGCGTTATTCCGGACATACGGAATCCCCTCAATATCCCGC CTCCTCGCAAAAACAACCCAATTCTCCAACCCGGATACCTCCCTGAAGCGGTACACAGATACCAGCCTCCTCGTG CAAGAATGGGTCGGCAACAACCCGACTTCCATGCGCGCATGTCTCGGTCTTGCCCGGACGCGCTACCTGCACAGC GGGTACAGGGCCTCTGGTAAGATCCTCGATGACGATATGCTCTTTACGCTGGCGCTGTTCGCGCTGCAGCCGATT CGCTTCATCGATCGCTATGAGTGGCGTAAGCTGAGTGACCTGGAGCGATGCGCTATCGGGACATTCTGGAAGAGT GCCGGTGATGCGCTGGATATTAGCTATGAGAAACTGCCGTCTGGTAAAGTCGGGTTCCAGGATGGGATTCAGTGG CTCGAGGAGTTGACTGCTTGGGCTGATGAGTATGAGGTGAGATGCATGGTGCCTGATATTAAGAATCGTGAGACG GCGGATCAGACTACTGCTGTCCTGCTTTATATGCTACCTAAGGTCTTTCATCCGGCTGGGTTGCAGGCTGTTTCG TTTATGATGGACGATAGGCTTAGGAAGGCGATGTTCTACGAACCCCCCTCCGCATTCTGCACAGCACTTCTCTCA ACCATCTTCACAGCCCGCAGGCTATTCCTCCGCTACCTCTCTCTGCCACGACCGTACTTCATGCGCTTCGCTTCG TCCACTGAGGAGCCGGATGAGAACGACCGCTTCTTCCTTACCGAGTGGGAGGCTGCGCCGTACTATGTCAAGCCC ACATTCTGGAACCGCTGGGGCCCGATGGCATTGCTGACGCGGGCTATAGGGCGGGCTGTGCCAGGTGACGAGGGG GATAAGTATTATCCCACTGGATATAGTGTTGCGGATATTGGACCGAAGTATTTCGAGGGGAAGGGGAGGAAGCAG TTAGAGGAGACTCTGGTGGAGTTCAAGGAGTATCGGACTGGGAAATGTCCCTTCCATTGA |
| Transcript | >Pro_DTO377G3_2|g1918.t1 ATGAATTACACCGATGCCCTGGCTTCACTACAAGCAGGGGGTATGACAACCCAACTACTCCCCTACGCCGTAGGC CTCCTCATCGCCTGGCCGGTAGTAACAACAAGCCTCCGATTCCAACGCCTGCGCAAGCTCCACAAACAATATGCC TATCCAACACGGGAGTCAATGTCCAAAATGACCGACGAAGAAGCCTTCCAGATCCAAAAACAAGTCGCGCAGCTC GAATTCCCATTCATATTCATCAAGAGCTTACAATTCGCGTTATTCCGGACATACGGAATCCCCTCAATATCCCGC CTCCTCGCAAAAACAACCCAATTCTCCAACCCGGATACCTCCCTGAAGCGGTACACAGATACCAGCCTCCTCGTG CAAGAATGGGTCGGCAACAACCCGACTTCCATGCGCGCATGTCTCGGTCTTGCCCGGACGCGCTACCTGCACAGC GGGTACAGGGCCTCTGGTAAGATCCTCGATGACGATATGCTCTTTACGCTGGCGCTGTTCGCGCTGCAGCCGATT CGCTTCATCGATCGCTATGAGTGGCGTAAGCTGAGTGACCTGGAGCGATGCGCTATCGGGACATTCTGGAAGAGT GCCGGTGATGCGCTGGATATTAGCTATGAGAAACTGCCGTCTGGTAAAGTCGGGTTCCAGGATGGGATTCAGTGG CTCGAGGAGTTGACTGCTTGGGCTGATGAGTATGAGGTGAGATGCATGGTGCCTGATATTAAGAATCGTGAGACG GCGGATCAGACTACTGCTGTCCTGCTTTATATGCTACCTAAGGTCTTTCATCCGGCTGGGTTGCAGGCTGTTTCG TTTATGATGGACGATAGGCTTAGGAAGGCGATGTTCTACGAACCCCCCTCCGCATTCTGCACAGCACTTCTCTCA ACCATCTTCACAGCCCGCAGGCTATTCCTCCGCTACCTCTCTCTGCCACGACCGTACTTCATGCGCTTCGCTTCG TCCACTGAGGAGCCGGATGAGAACGACCGCTTCTTCCTTACCGAGTGGGAGGCTGCGCCGTACTATGTCAAGCCC ACATTCTGGAACCGCTGGGGCCCGATGGCATTGCTGACGCGGGCTATAGGGCGGGCTGTGCCAGGTGACGAGGGG GATAAGTATTATCCCACTGGATATAGTGTTGCGGATATTGGACCGAAGTATTTCGAGGGGAAGGGGAGGAAGCAG TTAGAGGAGACTCTGGTGGAGTTCAAGGAGTATCGGACTGGGAAATGTCCCTTCCATTGA |
| Gene | >Pro_DTO377G3_2|g1918.t1 ATGAATTACACCGATGCCCTGGCTTCACTACAAGCAGGGGGTATGACAACCCAACTACTCCCCTACGCCGTAGGC CTCCTCATCGCCTGGCCGGTAGTAACAACAAGCCTCCGATTCCAACGCCTGCGCAAGCTCCACAAACAATATGCC TATCCAACACGGGAGTCAATGTCCAAAATGACCGACGAAGAAGCCTTCCAGATCCAAAAACAAGTCGCGCAGCTC GAATTCCCATTCATATTCATCAAGAGCTTACAATTCGCGTTATTCCGGGTATGAAACAAGACCAGTTACCAACCC ACCCACATGGGCAAACACTCACAATCCGGGTCATGATCTACCGATCCACACATGCATTTTCTAACTATAAAAAAG ACATACGGAATCCCCTCAATATCCCGCCTCCTCGCAAAAACAACCCAATTCTCCAACCCGGATACCTCCCTGAAG CGGTACACAGATACCAGCCTCCTCGTGCAAGAATGGGTCGGCAACAACCCGACTTCCATGCGCGCATGTCTCGGT CTTGCCCGGACGCGCTACCTGCACAGCGGGTACAGGGCCTCTGGTAAGATCCTCGATGACGATATGCTCTTTACG CTGGCGCTGTTCGCGCTGCAGCCGATTCGCTTCATCGATCGCTATGAGTGGCGTAAGCTGAGTGACCTGGAGCGA TGCGCTATCGGGACATTCTGGAAGAGTGCCGGTGATGCGCTGGATATTAGCTATGAGAAACTGCCGTCTGGTAAA GTCGGGTTCCAGGATGGGATTCAGTGGCTCGAGGAGTTGACTGCTTGGGCTGATGAGTATGAGGTGAGATGCATG GTGCCTGATATTAAGAATCGTGAGACGGCGGATCAGACTACTGCTGTCCTGCTTTATATGCTACCTAAGGTCTTT CATCCGGCTGGGTTGCAGGCTGTTTCGTTTATGATGGACGATAGGCTTAGGAAGGCGATGTTGTAAGTTTCTTTC TTTCTTGGTTTTGGTTTGCATGTTCAGGTCGCAACTAACCTCTAACTACTGACTAAACAGCTACGAACCCCCCTC CGCATTCTGCACAGCACTTCTCTCAACCATCTTCACAGCCCGCAGGCTATTCCTCCGCTACCTCTCTCTGCCACG ACCGTACTTCATGCGCTTCGCTTCGTCCACTGAGGAGCCGGATGAGAACGACCGCTTCTTCCTTACCGAGTGGGA GGCTGCGCCGTACTATGTCAAGCCCACATTCTGGAACCGCTGGGGCCCGATGGCATTGCTGACGCGGGCTATAGG GCGGGCTGTGCCAGGTGACGAGGGGGATAAGTATTATCCCACTGGATATAGTGTTGCGGATATTGGACCGAAGTA TTTCGAGGGGAAGGGGAGGAAGCAGTTAGAGGAGACTCTGGTGGAGTTCAAGGAGTATCGGACTGGGAAATGTCC CTTCCATTGA |