© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1902.t1 |
| Gene name | |
| Location | scaffold_02:1121656..1123306 |
| Strand | - |
| Gene length (bp) | 1650 |
| Transcript length (bp) | 1584 |
| Coding sequence length (bp) | 1584 |
| Protein length (aa) | 528 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01593 | Amino_oxidase | Flavin containing amine oxidoreductase | 4.4E-57 | 57 | 511 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 7.7E-15 | 52 | 111 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.3E-07 | 44 | 93 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 8.5E-07 | 49 | 86 |
| PF03486 | HI0933_like | HI0933-like protein | 8.8E-07 | 49 | 92 |
| PF01494 | FAD_binding_3 | FAD binding domain | 6.9E-05 | 49 | 80 |
| PF00890 | FAD_binding_2 | FAD binding domain | 1.4E-04 | 50 | 86 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.09 | 0.85 | 5.34 |
| 5d_25C | Five days - 25 degrees Celsius | 4.18 | 1.18 | 7.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.03 | 1.44 | 8.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.50 | 0.14 | 2.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.54 | 2.91 | 14.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 9.18 | 3.71 | 14.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.536971 | no |
| 3d_25C | 7d_25C | 0.247563 | no |
| 3d_25C | 7d_15C | 0.004840 | yes |
| 3d_25C | 7d_30C | 0.004045 | yes |
| 3d_25C | 10d_25C | 0.134803 | no |
| 5d_25C | 7d_25C | 0.730984 | no |
| 5d_25C | 7d_15C | 0.060388 | no |
| 5d_25C | 7d_30C | 0.033253 | yes |
| 5d_25C | 10d_25C | 0.032181 | yes |
| 7d_25C | 7d_15C | 0.170786 | no |
| 7d_25C | 7d_30C | 0.096313 | no |
| 7d_25C | 10d_25C | 0.009770 | yes |
| 7d_15C | 7d_30C | 0.891073 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1902.t1 MAQSFHLSSPITGINPIKPSNCCSDLAALDKTPRELIEGTHAVRSERKKVIVVGAGVSGLHAAAVLHRHGCEVVV LEARDRIGGRILTSRKGDHVRDIGAAWMHETSQNSLVKLIPQLSIPYYYDDGVPLYFTRDGRTGSQFKAKKVADE FADYCEWFYETNPEAEDRPVQEFAREFVLQHQLITEDEREWAPQAIREVELWIGTSTDQASSKHLSYFITERNVY MKGGYDRIVNWTAETLRSDPNIIRLNHRVEDVEWNEHGTAPARIRYKDAAGEVGFIQGDAVIMTSPLGVYHHNLI SFNPPLPGDIQEGMSRCSYGALGKVFFEFAEVFWSKENDQFVFYPSPSEETDTSTGSSSSMESNPSINSIGENDN ILNYATVTINLWIMTGSKELCVQIAEPLTQRIENMQDPKEIYLFFEPLFKIFRTEPYKALPSLVNVETTHWTQDP LAGYGTYSADKVGDEPQLLVDALKNHKSSRLQFAGEHCTIVGNGCVHGAYKSGETAATNLLEGFGIQYDGLDAIS LK* |
| Coding | >Pro_DTO377G3_2|g1902.t1 ATGGCTCAATCTTTCCATCTTTCTTCTCCCATAACGGGCATTAATCCCATAAAACCGAGTAATTGTTGCTCCGAC CTGGCTGCGCTCGATAAGACTCCGAGGGAGTTGATCGAGGGAACACACGCAGTGAGGTCGGAGCGCAAGAAGGTG ATTGTGGTGGGCGCTGGAGTTTCTGGCCTGCATGCCGCGGCTGTTCTGCACCGCCATGGCTGCGAAGTGGTGGTA TTAGAAGCACGCGATCGCATTGGTGGAAGAATTTTGACAAGCCGAAAGGGTGACCATGTCCGAGATATTGGTGCC GCTTGGATGCATGAAACTTCCCAGAACAGCCTGGTGAAACTCATTCCCCAGCTATCTATCCCATATTATTATGAC GATGGCGTTCCTCTATACTTCACCAGAGACGGCCGAACTGGATCCCAGTTCAAAGCTAAGAAAGTTGCAGACGAG TTCGCTGATTATTGCGAGTGGTTCTACGAAACTAACCCAGAGGCTGAGGATCGTCCAGTCCAGGAATTTGCGAGA GAATTCGTTCTCCAGCACCAGCTCATCACCGAAGATGAGCGTGAGTGGGCTCCGCAGGCTATCCGCGAGGTAGAA TTGTGGATCGGCACTAGTACGGACCAAGCATCGTCCAAACATCTTTCTTACTTCATCACCGAACGCAATGTATAT ATGAAGGGTGGCTATGATCGGATCGTGAACTGGACTGCGGAGACGCTCCGAAGCGATCCAAACATCATTAGACTC AACCACCGCGTCGAGGACGTGGAGTGGAACGAACACGGGACGGCACCAGCTCGAATCCGGTACAAGGATGCTGCT GGAGAAGTCGGGTTCATCCAGGGCGATGCAGTTATCATGACTAGCCCACTGGGGGTCTACCACCACAACCTCATC TCGTTTAACCCGCCCTTACCGGGTGACATCCAAGAGGGCATGTCTAGGTGCAGCTACGGCGCCTTGGGCAAGGTG TTTTTCGAATTCGCCGAAGTCTTCTGGTCAAAGGAGAATGATCAGTTTGTCTTCTACCCATCTCCATCAGAGGAA ACGGACACTTCAACCGGGTCATCATCATCCATGGAGTCCAACCCCAGTATAAACTCGATCGGGGAGAATGATAAT ATCCTAAATTACGCCACCGTGACAATCAATTTATGGATTATGACGGGCAGCAAAGAGCTGTGCGTACAGATTGCC GAACCTCTGACGCAGCGCATCGAGAACATGCAAGATCCGAAGGAGATATATCTATTTTTTGAACCGCTTTTCAAG ATATTCCGCACAGAACCATACAAGGCTTTGCCTAGCCTGGTTAATGTTGAAACTACACATTGGACCCAGGACCCA CTGGCTGGGTATGGGACTTACTCCGCCGACAAGGTTGGAGATGAGCCGCAGCTGCTGGTTGATGCGTTGAAAAAC CACAAATCCAGTCGCTTGCAGTTCGCTGGTGAGCATTGTACTATTGTTGGCAATGGCTGCGTGCATGGTGCCTAT AAGTCGGGTGAAACTGCTGCCACCAATCTGCTCGAGGGCTTTGGCATTCAATATGATGGTCTTGATGCCATCAGT TTGAAATGA |
| Transcript | >Pro_DTO377G3_2|g1902.t1 ATGGCTCAATCTTTCCATCTTTCTTCTCCCATAACGGGCATTAATCCCATAAAACCGAGTAATTGTTGCTCCGAC CTGGCTGCGCTCGATAAGACTCCGAGGGAGTTGATCGAGGGAACACACGCAGTGAGGTCGGAGCGCAAGAAGGTG ATTGTGGTGGGCGCTGGAGTTTCTGGCCTGCATGCCGCGGCTGTTCTGCACCGCCATGGCTGCGAAGTGGTGGTA TTAGAAGCACGCGATCGCATTGGTGGAAGAATTTTGACAAGCCGAAAGGGTGACCATGTCCGAGATATTGGTGCC GCTTGGATGCATGAAACTTCCCAGAACAGCCTGGTGAAACTCATTCCCCAGCTATCTATCCCATATTATTATGAC GATGGCGTTCCTCTATACTTCACCAGAGACGGCCGAACTGGATCCCAGTTCAAAGCTAAGAAAGTTGCAGACGAG TTCGCTGATTATTGCGAGTGGTTCTACGAAACTAACCCAGAGGCTGAGGATCGTCCAGTCCAGGAATTTGCGAGA GAATTCGTTCTCCAGCACCAGCTCATCACCGAAGATGAGCGTGAGTGGGCTCCGCAGGCTATCCGCGAGGTAGAA TTGTGGATCGGCACTAGTACGGACCAAGCATCGTCCAAACATCTTTCTTACTTCATCACCGAACGCAATGTATAT ATGAAGGGTGGCTATGATCGGATCGTGAACTGGACTGCGGAGACGCTCCGAAGCGATCCAAACATCATTAGACTC AACCACCGCGTCGAGGACGTGGAGTGGAACGAACACGGGACGGCACCAGCTCGAATCCGGTACAAGGATGCTGCT GGAGAAGTCGGGTTCATCCAGGGCGATGCAGTTATCATGACTAGCCCACTGGGGGTCTACCACCACAACCTCATC TCGTTTAACCCGCCCTTACCGGGTGACATCCAAGAGGGCATGTCTAGGTGCAGCTACGGCGCCTTGGGCAAGGTG TTTTTCGAATTCGCCGAAGTCTTCTGGTCAAAGGAGAATGATCAGTTTGTCTTCTACCCATCTCCATCAGAGGAA ACGGACACTTCAACCGGGTCATCATCATCCATGGAGTCCAACCCCAGTATAAACTCGATCGGGGAGAATGATAAT ATCCTAAATTACGCCACCGTGACAATCAATTTATGGATTATGACGGGCAGCAAAGAGCTGTGCGTACAGATTGCC GAACCTCTGACGCAGCGCATCGAGAACATGCAAGATCCGAAGGAGATATATCTATTTTTTGAACCGCTTTTCAAG ATATTCCGCACAGAACCATACAAGGCTTTGCCTAGCCTGGTTAATGTTGAAACTACACATTGGACCCAGGACCCA CTGGCTGGGTATGGGACTTACTCCGCCGACAAGGTTGGAGATGAGCCGCAGCTGCTGGTTGATGCGTTGAAAAAC CACAAATCCAGTCGCTTGCAGTTCGCTGGTGAGCATTGTACTATTGTTGGCAATGGCTGCGTGCATGGTGCCTAT AAGTCGGGTGAAACTGCTGCCACCAATCTGCTCGAGGGCTTTGGCATTCAATATGATGGTCTTGATGCCATCAGT TTGAAATGA |
| Gene | >Pro_DTO377G3_2|g1902.t1 ATGGCTCAATCTTTCCATCTTTCTTCTCCCATAACGGGCATTAATCCCATAAAACCGAGTAATTGTTGCTCCGAC CTGGCTGCGCTCGATAAGACTCCGAGGGAGTTGATCGAGGGAACACACGCAGTGAGGTCGGAGCGCAAGAAGGTG ATTGTGGTGGGCGCTGGAGTTTCTGGCCTGCATGCCGCGGCTGTTCTGCACCGCCATGGCTGCGAAGTGGTGGTA TTAGAAGCACGCGATCGCATTGGTGGAAGAATTTTGACAAGCCGAAAGGGTGACCATGTCCGAGATATTGGTAAG ATAATGACACAAACCCGAAATCGAGGTTGAAACAGGGGGGGACTGTGCTGATAGTCAATAGGTGCCGCTTGGATG CATGAAACTTCCCAGAACAGCCTGGTGAAACTCATTCCCCAGCTATCTATCCCATATTATTATGACGATGGCGTT CCTCTATACTTCACCAGAGACGGCCGAACTGGATCCCAGTTCAAAGCTAAGAAAGTTGCAGACGAGTTCGCTGAT TATTGCGAGTGGTTCTACGAAACTAACCCAGAGGCTGAGGATCGTCCAGTCCAGGAATTTGCGAGAGAATTCGTT CTCCAGCACCAGCTCATCACCGAAGATGAGCGTGAGTGGGCTCCGCAGGCTATCCGCGAGGTAGAATTGTGGATC GGCACTAGTACGGACCAAGCATCGTCCAAACATCTTTCTTACTTCATCACCGAACGCAATGTATATATGAAGGGT GGCTATGATCGGATCGTGAACTGGACTGCGGAGACGCTCCGAAGCGATCCAAACATCATTAGACTCAACCACCGC GTCGAGGACGTGGAGTGGAACGAACACGGGACGGCACCAGCTCGAATCCGGTACAAGGATGCTGCTGGAGAAGTC GGGTTCATCCAGGGCGATGCAGTTATCATGACTAGCCCACTGGGGGTCTACCACCACAACCTCATCTCGTTTAAC CCGCCCTTACCGGGTGACATCCAAGAGGGCATGTCTAGGTGCAGCTACGGCGCCTTGGGCAAGGTGTTTTTCGAA TTCGCCGAAGTCTTCTGGTCAAAGGAGAATGATCAGTTTGTCTTCTACCCATCTCCATCAGAGGAAACGGACACT TCAACCGGGTCATCATCATCCATGGAGTCCAACCCCAGTATAAACTCGATCGGGGAGAATGATAATATCCTAAAT TACGCCACCGTGACAATCAATTTATGGATTATGACGGGCAGCAAAGAGCTGTGCGTACAGATTGCCGAACCTCTG ACGCAGCGCATCGAGAACATGCAAGATCCGAAGGAGATATATCTATTTTTTGAACCGCTTTTCAAGATATTCCGC ACAGAACCATACAAGGCTTTGCCTAGCCTGGTTAATGTTGAAACTACACATTGGACCCAGGACCCACTGGCTGGG TATGGGACTTACTCCGCCGACAAGGTTGGAGATGAGCCGCAGCTGCTGGTTGATGCGTTGAAAAACCACAAATCC AGTCGCTTGCAGTTCGCTGGTGAGCATTGTACTATTGTTGGCAATGGCTGCGTGCATGGTGCCTATAAGTCGGGT GAAACTGCTGCCACCAATCTGCTCGAGGGCTTTGGCATTCAATATGATGGTCTTGATGCCATCAGTTTGAAATGA |