© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1895.t1 |
| Gene name | |
| Location | scaffold_02:1108605..1109136 |
| Strand | + |
| Gene length (bp) | 531 |
| Transcript length (bp) | 531 |
| Coding sequence length (bp) | 531 |
| Protein length (aa) | 177 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13673 | Acetyltransf_10 | Acetyltransferase (GNAT) domain | 9.7E-11 | 47 | 149 |
| PF00583 | Acetyltransf_1 | Acetyltransferase (GNAT) family | 2.2E-09 | 55 | 143 |
| PF13508 | Acetyltransf_7 | Acetyltransferase (GNAT) domain | 6.9E-07 | 61 | 145 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | Yes |
| GO:0016410 | N-acyltransferase activity | No |
| GO:0016407 | acetyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 106.58 | 57.64 | 155.52 |
| 5d_25C | Five days - 25 degrees Celsius | 247.61 | 148.49 | 346.73 |
| 7d_25C | Seven days - 25 degrees Celsius | 249.80 | 148.26 | 351.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 407.00 | 248.08 | 565.93 |
| 7d_15C | Seven days - 15 degrees Celsius | 265.00 | 154.13 | 375.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 188.23 | 108.42 | 268.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.014096 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.980353 | no |
| 5d_25C | 7d_15C | 0.834521 | no |
| 5d_25C | 7d_30C | 0.272871 | no |
| 5d_25C | 10d_25C | 0.016924 | yes |
| 7d_25C | 7d_15C | 0.859010 | no |
| 7d_25C | 7d_30C | 0.252883 | no |
| 7d_25C | 10d_25C | 0.020660 | yes |
| 7d_15C | 7d_30C | 0.152787 | no |
| 7d_15C | 10d_25C | 0.048648 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1895.t1 MNDLNFRVATEADAPRLQQLVESAFRAEDSRKGWTDDLGLSASFRLDVQEILAMITKPDSVFLMATDDENTLVGS IGTSKRDINHAHLFMLAVDTSQQRGGVGRQVLAYAEDYSQRTWGVTTLGLNALSNRQQLISWYSRRGYKETGETS PFPREKFANLALPDDLCFVEFEKVLE* |
| Coding | >Pro_DTO377G3_2|g1895.t1 ATGAACGACCTTAATTTCCGTGTCGCGACCGAAGCGGACGCGCCTCGACTCCAGCAGTTGGTGGAATCTGCGTTC CGCGCCGAGGACAGCAGAAAAGGCTGGACCGATGATCTAGGCCTCTCGGCAAGCTTTCGCCTGGATGTCCAAGAG ATCTTGGCCATGATCACCAAGCCGGACAGTGTCTTTTTGATGGCCACCGACGATGAAAATACGCTCGTCGGCTCA ATCGGGACTTCCAAACGCGACATAAACCACGCTCATCTTTTTATGCTTGCCGTCGATACAAGCCAACAGCGCGGC GGCGTTGGGAGACAAGTCTTGGCTTACGCTGAAGACTATTCCCAGAGGACTTGGGGTGTTACCACGCTGGGATTA AATGCCCTTTCGAATCGCCAGCAACTTATCTCGTGGTATTCGCGTCGTGGATACAAAGAAACGGGCGAGACATCG CCCTTTCCTCGTGAGAAGTTCGCGAACTTGGCGTTACCGGATGATCTTTGTTTTGTTGAATTTGAGAAGGTTCTG GAATAG |
| Transcript | >Pro_DTO377G3_2|g1895.t1 ATGAACGACCTTAATTTCCGTGTCGCGACCGAAGCGGACGCGCCTCGACTCCAGCAGTTGGTGGAATCTGCGTTC CGCGCCGAGGACAGCAGAAAAGGCTGGACCGATGATCTAGGCCTCTCGGCAAGCTTTCGCCTGGATGTCCAAGAG ATCTTGGCCATGATCACCAAGCCGGACAGTGTCTTTTTGATGGCCACCGACGATGAAAATACGCTCGTCGGCTCA ATCGGGACTTCCAAACGCGACATAAACCACGCTCATCTTTTTATGCTTGCCGTCGATACAAGCCAACAGCGCGGC GGCGTTGGGAGACAAGTCTTGGCTTACGCTGAAGACTATTCCCAGAGGACTTGGGGTGTTACCACGCTGGGATTA AATGCCCTTTCGAATCGCCAGCAACTTATCTCGTGGTATTCGCGTCGTGGATACAAAGAAACGGGCGAGACATCG CCCTTTCCTCGTGAGAAGTTCGCGAACTTGGCGTTACCGGATGATCTTTGTTTTGTTGAATTTGAGAAGGTTCTG GAATAG |
| Gene | >Pro_DTO377G3_2|g1895.t1 ATGAACGACCTTAATTTCCGTGTCGCGACCGAAGCGGACGCGCCTCGACTCCAGCAGTTGGTGGAATCTGCGTTC CGCGCCGAGGACAGCAGAAAAGGCTGGACCGATGATCTAGGCCTCTCGGCAAGCTTTCGCCTGGATGTCCAAGAG ATCTTGGCCATGATCACCAAGCCGGACAGTGTCTTTTTGATGGCCACCGACGATGAAAATACGCTCGTCGGCTCA ATCGGGACTTCCAAACGCGACATAAACCACGCTCATCTTTTTATGCTTGCCGTCGATACAAGCCAACAGCGCGGC GGCGTTGGGAGACAAGTCTTGGCTTACGCTGAAGACTATTCCCAGAGGACTTGGGGTGTTACCACGCTGGGATTA AATGCCCTTTCGAATCGCCAGCAACTTATCTCGTGGTATTCGCGTCGTGGATACAAAGAAACGGGCGAGACATCG CCCTTTCCTCGTGAGAAGTTCGCGAACTTGGCGTTACCGGATGATCTTTGTTTTGTTGAATTTGAGAAGGTTCTG GAATAG |