© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1894.t1 |
| Gene name | |
| Location | scaffold_02:1107432..1108182 |
| Strand | - |
| Gene length (bp) | 750 |
| Transcript length (bp) | 690 |
| Coding sequence length (bp) | 690 |
| Protein length (aa) | 230 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 7.9E-07 | 8 | 141 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 3.6E-06 | 5 | 116 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 289.05 | 176.67 | 401.43 |
| 5d_25C | Five days - 25 degrees Celsius | 366.84 | 222.92 | 510.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 340.12 | 207.26 | 472.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 518.87 | 311.94 | 725.80 |
| 7d_15C | Seven days - 15 degrees Celsius | 361.17 | 217.50 | 504.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 342.76 | 205.62 | 479.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.311002 | no |
| 3d_25C | 7d_25C | 0.526925 | no |
| 3d_25C | 7d_15C | 0.359519 | no |
| 3d_25C | 7d_30C | 0.510090 | no |
| 3d_25C | 10d_25C | 0.003197 | yes |
| 5d_25C | 7d_25C | 0.802559 | no |
| 5d_25C | 7d_15C | 0.965410 | no |
| 5d_25C | 7d_30C | 0.829466 | no |
| 5d_25C | 10d_25C | 0.113948 | no |
| 7d_25C | 7d_15C | 0.848866 | no |
| 7d_25C | 7d_30C | 0.984098 | no |
| 7d_25C | 10d_25C | 0.043406 | yes |
| 7d_15C | 7d_30C | 0.874997 | no |
| 7d_15C | 10d_25C | 0.100309 | no |
| 7d_30C | 10d_25C | 0.051825 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1894.t1 MATAAVFGCTGAVGSQILATLLSSDAFSKVKTISRRLPNAQADKLEALEENDTSKWGDMISSLSPKPSVVFNAVG TTKATAGSIQNQWKIDHDLCVENARAAKEAGVKTYVFISSGGTRSLLWGWVPYSKMKVGVEDAIMEFNFENAIVL RPGMIIGREKSKSFLLEKFVEGLQKLGQGIQDKVGQDQTTIGRAAVAAARLVEEGKAPSSYWTLEQADIVRLGRD EWKE* |
| Coding | >Pro_DTO377G3_2|g1894.t1 ATGGCGACGGCAGCGGTATTCGGCTGCACAGGAGCTGTAGGGTCTCAAATTCTGGCTACCCTTCTCTCATCGGAC GCATTTTCCAAAGTGAAGACCATCTCCAGAAGACTCCCGAATGCGCAGGCCGATAAGCTCGAAGCACTCGAGGAA AACGATACCTCAAAATGGGGAGACATGATCTCGTCTCTGTCCCCCAAGCCATCAGTGGTCTTTAACGCGGTCGGA ACTACCAAAGCAACAGCAGGCAGCATCCAGAACCAGTGGAAGATCGACCATGATTTATGCGTGGAGAACGCTCGA GCAGCTAAGGAGGCGGGCGTGAAGACGTACGTTTTCATTTCCAGCGGAGGCACGAGAAGCCTTCTCTGGGGCTGG GTCCCATACTCGAAAATGAAGGTTGGCGTCGAGGATGCCATCATGGAGTTTAACTTTGAGAATGCTATCGTTCTG AGACCCGGGATGATTATTGGGAGGGAGAAGTCGAAGTCTTTTCTTCTAGAGAAGTTTGTGGAAGGCCTTCAGAAG CTTGGCCAGGGTATCCAGGACAAAGTTGGTCAAGATCAAACTACTATTGGTAGAGCAGCTGTAGCAGCTGCTCGT TTGGTTGAAGAGGGCAAAGCCCCGTCGAGCTATTGGACTCTGGAACAGGCTGATATTGTTAGGCTCGGCAGAGAT GAGTGGAAGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g1894.t1 ATGGCGACGGCAGCGGTATTCGGCTGCACAGGAGCTGTAGGGTCTCAAATTCTGGCTACCCTTCTCTCATCGGAC GCATTTTCCAAAGTGAAGACCATCTCCAGAAGACTCCCGAATGCGCAGGCCGATAAGCTCGAAGCACTCGAGGAA AACGATACCTCAAAATGGGGAGACATGATCTCGTCTCTGTCCCCCAAGCCATCAGTGGTCTTTAACGCGGTCGGA ACTACCAAAGCAACAGCAGGCAGCATCCAGAACCAGTGGAAGATCGACCATGATTTATGCGTGGAGAACGCTCGA GCAGCTAAGGAGGCGGGCGTGAAGACGTACGTTTTCATTTCCAGCGGAGGCACGAGAAGCCTTCTCTGGGGCTGG GTCCCATACTCGAAAATGAAGGTTGGCGTCGAGGATGCCATCATGGAGTTTAACTTTGAGAATGCTATCGTTCTG AGACCCGGGATGATTATTGGGAGGGAGAAGTCGAAGTCTTTTCTTCTAGAGAAGTTTGTGGAAGGCCTTCAGAAG CTTGGCCAGGGTATCCAGGACAAAGTTGGTCAAGATCAAACTACTATTGGTAGAGCAGCTGTAGCAGCTGCTCGT TTGGTTGAAGAGGGCAAAGCCCCGTCGAGCTATTGGACTCTGGAACAGGCTGATATTGTTAGGCTCGGCAGAGAT GAGTGGAAGGAGTAA |
| Gene | >Pro_DTO377G3_2|g1894.t1 ATGGCGACGGCAGCGGTATTCGGCTGCACAGGAGCTGTAGGGTCTCAAATTCTGGCTACCCTTCTCTCATCGGAC GCATTTTCCAAAGTGAAGACCATCTCCAGAAGACTCCCGAATGCGCAGGCCGATAAGCTCGAAGCACTCGAGGAA AACGATACCTCAAAATGGGGAGACATGATCTCGTCTCTGTCCCCCAAGCCATCAGTGGTCTTTAACGCGGTCGGA ACTACCAAAGCAACAGCAGGCAGCATCCAGAACCAGTGGAAGATCGACCATGATTTATGCGTGGAGAACGCTCGA GCAGCTAAGGAGGCGGGCGTGAAGACGTACGTTTTCATTTCCAGCGGAGGCACGAGAAGCCTTCTCTGGGGCTGG GTCCCATACTCGAAAATGAAGGTTGGCGTCGAGGATGCCATCATGGAGTTTAACTTTGAGAATGCTATCGTTCTG AGACCCGGGATGATTATTGGGAGGGAGAAGTCGAAGTCTTTTCTTCTAGAGAAGTTTGTGGAAGGCCTTCAGAAG CTTGGCCAGGGTATCCAGGACAAAGTTGGTATGGTTATGCTGATCACGCGAATGTTGACGAAGATTCAGAGCTAA CTGGCGCGAGCAGGTCAAGATCAAACTACTATTGGTAGAGCAGCTGTAGCAGCTGCTCGTTTGGTTGAAGAGGGC AAAGCCCCGTCGAGCTATTGGACTCTGGAACAGGCTGATATTGTTAGGCTCGGCAGAGATGAGTGGAAGGAGTAA |