© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1859.t1 |
| Gene name | |
| Location | scaffold_02:1009899..1012447 |
| Strand | - |
| Gene length (bp) | 2548 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 1.1E-82 | 51 | 423 |
| PF13520 | AA_permease_2 | Amino acid permease | 3.9E-23 | 49 | 414 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 121 | 140 | 19 |
| 4 | 160 | 182 | 22 |
| 5 | 194 | 216 | 22 |
| 6 | 236 | 258 | 22 |
| 7 | 270 | 292 | 22 |
| 8 | 326 | 348 | 22 |
| 9 | 361 | 383 | 22 |
| 10 | 398 | 420 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.02 | 0.0 | 0.13 |
| 5d_25C | Five days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.10 | 0.0 | 0.30 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.00 | 0.0 | 0.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1859.t1 MADFSLPQTKADTSKKPSVTEVQESDEPHRDISGDIIEDGLRRGLKGRQFVIIALGSIIGPGCFYGLGYGIYEAG PLGLLIGFSVVGASMWILMQSVGEVATLFPVHGGFVEHCDRFVDPALSFAVSWLYYFMWSVFLASDWNNATVFLQ FWIPDTTIPVWAWYILFFVFFSILTTLGVNFYGETEYYFGMFKFLSLIVLFFISILADTGAFGNGYVGFRYWKEP YGPIRNGINGFGQVFVLAAAYYVGTEIVSVAAGESKNPQRDVPRATNSILYRILVVFVGMSFFQGLICPSTSDDL VHPSSTTASSPFTIGFVLAGWKSSGHFVNAIIIIAFISAANGVIYIQSRTLYSLALKRKAPSCFAITNTGGVPYP AIIFSNMWGFLGLMSLQTTAGSLFSYFTSFGGTAAYIAWASITFVHLRT* |
| Coding | >Pro_DTO377G3_2|g1859.t1 ATGGCAGACTTCTCATTACCGCAGACAAAAGCCGATACATCGAAAAAGCCGTCTGTCACCGAAGTTCAAGAGAGC GATGAACCCCATCGCGACATTTCTGGCGACATCATCGAGGATGGCCTACGCCGGGGGCTTAAGGGCCGTCAATTT GTGATAATTGCCCTAGGGAGTATCATTGGACCGGGTTGCTTTTATGGCTTGGGCTATGGGATCTACGAAGCTGGT CCATTGGGTCTCCTGATTGGATTTTCTGTTGTGGGTGCTTCGATGTGGATTTTGATGCAGAGTGTTGGAGAGGTT GCCACGCTCTTTCCTGTTCACGGCGGGTTTGTAGAACACTGTGATCGATTCGTAGATCCAGCCCTCAGCTTTGCA GTATCTTGGCTTTACTATTTTATGTGGAGTGTATTTCTTGCATCAGATTGGAATAATGCCACAGTCTTCCTTCAA TTCTGGATTCCCGATACCACGATCCCCGTCTGGGCTTGGTACATCTTATTCTTTGTCTTTTTCTCCATTCTAACC ACCCTTGGGGTGAACTTCTACGGGGAGACTGAATACTACTTTGGCATGTTTAAGTTCCTGTCACTCATTGTGCTA TTTTTTATCTCAATTCTTGCCGATACTGGTGCGTTTGGTAATGGGTATGTCGGATTCAGGTACTGGAAAGAGCCA TACGGCCCAATCCGAAATGGAATCAATGGATTTGGTCAAGTATTTGTTCTGGCCGCCGCATACTATGTTGGAACT GAGATTGTTTCTGTCGCCGCGGGAGAGTCCAAGAACCCCCAACGAGACGTTCCTCGTGCCACCAATTCTATCCTC TATCGTATCTTGGTCGTGTTTGTTGGCATGTCGTTTTTCCAAGGCCTGATTTGTCCGTCAACATCGGATGATCTG GTGCATCCATCGTCGACAACGGCATCATCCCCGTTCACTATTGGTTTTGTACTTGCTGGGTGGAAGTCTTCCGGG CATTTCGTCAATGCGATTATTATAATTGCCTTCATTTCCGCTGCGAATGGAGTGATCTACATCCAATCACGCACA CTTTACTCTCTCGCGTTGAAACGCAAAGCTCCCTCGTGCTTTGCAATCACAAACACTGGGGGGGTGCCATACCCG GCAATTATTTTCTCAAATATGTGGGGCTTCCTAGGCCTGATGTCCTTGCAAACAACGGCAGGGAGTCTGTTTTCC TACTTCACCTCTTTCGGTGGAACTGCGGCCTACATCGCATGGGCTTCGATCACATTTGTTCATCTGAGAACTTGA |
| Transcript | >Pro_DTO377G3_2|g1859.t1 ATGGCAGACTTCTCATTACCGCAGACAAAAGCCGATACATCGAAAAAGCCGTCTGTCACCGAAGTTCAAGAGAGC GATGAACCCCATCGCGACATTTCTGGCGACATCATCGAGGATGGCCTACGCCGGGGGCTTAAGGGCCGTCAATTT GTGATAATTGCCCTAGGGAGTATCATTGGACCGGGTTGCTTTTATGGCTTGGGCTATGGGATCTACGAAGCTGGT CCATTGGGTCTCCTGATTGGATTTTCTGTTGTGGGTGCTTCGATGTGGATTTTGATGCAGAGTGTTGGAGAGGTT GCCACGCTCTTTCCTGTTCACGGCGGGTTTGTAGAACACTGTGATCGATTCGTAGATCCAGCCCTCAGCTTTGCA GTATCTTGGCTTTACTATTTTATGTGGAGTGTATTTCTTGCATCAGATTGGAATAATGCCACAGTCTTCCTTCAA TTCTGGATTCCCGATACCACGATCCCCGTCTGGGCTTGGTACATCTTATTCTTTGTCTTTTTCTCCATTCTAACC ACCCTTGGGGTGAACTTCTACGGGGAGACTGAATACTACTTTGGCATGTTTAAGTTCCTGTCACTCATTGTGCTA TTTTTTATCTCAATTCTTGCCGATACTGGTGCGTTTGGTAATGGGTATGTCGGATTCAGGTACTGGAAAGAGCCA TACGGCCCAATCCGAAATGGAATCAATGGATTTGGTCAAGTATTTGTTCTGGCCGCCGCATACTATGTTGGAACT GAGATTGTTTCTGTCGCCGCGGGAGAGTCCAAGAACCCCCAACGAGACGTTCCTCGTGCCACCAATTCTATCCTC TATCGTATCTTGGTCGTGTTTGTTGGCATGTCGTTTTTCCAAGGCCTGATTTGTCCGTCAACATCGGATGATCTG GTGCATCCATCGTCGACAACGGCATCATCCCCGTTCACTATTGGTTTTGTACTTGCTGGGTGGAAGTCTTCCGGG CATTTCGTCAATGCGATTATTATAATTGCCTTCATTTCCGCTGCGAATGGAGTGATCTACATCCAATCACGCACA CTTTACTCTCTCGCGTTGAAACGCAAAGCTCCCTCGTGCTTTGCAATCACAAACACTGGGGGGGTGCCATACCCG GCAATTATTTTCTCAAATATGTGGGGCTTCCTAGGCCTGATGTCCTTGCAAACAACGGCAGGGAGTCTGTTTTCC TACTTCACCTCTTTCGGTGGAACTGCGGCCTACATCGCATGGGCTTCGATCACATTTGTTCATCTGAGAACTTGA |
| Gene | >Pro_DTO377G3_2|g1859.t1 ATGGCAGACTTCTCATTACCGCAGACAAAAGCCGATACATCGAAAAAGCCGTCTGTCACCGAAGTTCAAGAGAGC GATGAACCCCATCGCGACATTTCTGGCGACATCATCGAGGATGGCCTACGCCGGGGGCTTAAGGGCCGTCAATTT GTGATAATTGCCCTAGGGAGTATCATTGGACCGGGTTGCTTTTATGGCTTGGGCTATGGGATCTACGAAGCTGGT CCATTGGGTCTCCTGATTGGATTTTCTGTTGTGGGTGAGTTGGTAGCATTGCAAAGCATATTTCTCACAAAGTTG ACATGGCCCAGGTGCTTCGATGTGGATTTTGATGCAGAGTGTTGGAGAGGTTGCCACGCTCTTTCCTGTTCACGG CGGGTTTGTAGAAGTAAGTAACTCCAATCTCAACCTGCTGGAAATTTTGCTAACCTGTTTCATATAGCACTGTGA TCGATTCGTAGATCCAGCCCTCAGCTTTGCAGTATCTTGGCTTTACTATTTTATGTGGAGTGTATTTCTTGCATC AGGTGAGTGTCGTCAACAAGTAAGAAATGGCCTGCACTAATCAACTTCAAAGATTGGAATAATGCCACAGTCTTC CTTCAATTCTGGATTCCCGATACCACGATCCCCGTCTGGGCTTGGTACATCTTATTCTTTGTCTTTTTCTCCATT CTAACCACCCTTGGGGTGAACTTCTACGGGGAGACTGAATACTACTTTGGCATGTTTAAGTTCCTGTCACTCATT GTGCTATTTTTTATCTCAATTCTTGCCGATACTGGTGCGTTTGGTAATGGGTATGTCGGATTCAGGTACTGGAAA GAGCCATACGGTGAGTATTCTCGCACACGAATTGATTCGCAGATCTGACATTCTGCCAGGCCCAATCCGAAATGG AATCAATGGATTTGGTCAAGTATTTGTTCTGGCCGCCGCATACTATGTTGGAACTGAGATTGTTTCTGTCGCCGC GGGAGAGTCCAAGAACCCCCAACGAGACGTTCCTCGTGTGCGTGCATCCCCTAAATCGGTGACATTCAAAGTGAA TCTGATGCTGACTTTGTTTAGGCCACCAATTCTATCCTCTATCGTATCTTGGTCGTGTTTGTTGGCATGTCGTTT TTCCAAGGCCTGATTTGTCCGTCAACATCGGATGATCTGGTGCATCCATCGTCGACAACGGCATCATCCCCGTTC ACTATTGGTTTTGTACTTGCTGGGTGGAAGTCTTCCGGGCATTTCGTCAATGCGATTATTATAATTGCCTTCATT TCCGCTGCGAATGGAGTGATCTACATCCAATCACGCACACTTTACTCTCTCGCGTTGAAACGCAAAGCTCCCTCG TGCTTTGCAATCACAAACACTGGGGGGGGTAAGACAATGTCCTCTTCTATCCTCTCTCTGGTAACAACTAATATT GTGTGCAGTGCCATACCCGGCAATTATTTTCTCAAATATGTGGGGCTTCCTAGGCCTGATGTCCTTGCAAACAAC GGCAGGGAGTCTGTTTTCCTACTTCACCTCTTTCGGTGGAACTGCGGCCTACATCGCATGGGCTTCGATCACATT TGTTCATCTGAGAGTTCGTGGCGCTGCGAAGAGGAAAGGGATCGACGCCAAAGAATTTCCCTATACAGCGCCGGG CCACATTTCGATCTACTGGGGTAACTTCTTCTTCAATATTTTCCTATTGCTGATCCAAGGTTTCACGGTATTTGA GACACCATTCAACTATTCGTTGTTTATCGCGTCATATATTAGTATTCCGGTATTTTTCCTCATGTTTTTTGGATA TAAATGGTGGTTCAAGACTAAATGGTCAGTCGTTGCTTCATATCAAAGCAAGACTCGATACTTACATTCAACTTT TTTAGGGTATCATTGGATGACATTAATTTCCCGGATAGGCTCAACTGGGTGATTGAAGATCCGGACAAGGCAAAG AAAAGATCCTTGGGCAGAAGGCTCGTGAGAATTTTGAAGGAATAATGGGTCGATAAAGATAAAACAACCTTACAG TTGTTGATATTATGGTTTCCCAATCTTCAATCTCGCTACTATCTTAGTATTGGTTCTAAATTTAGGGAAGCCACA AACGACCCTAAAGAAGCTCTACTTCTAAACTCAAAATATATCTGTACGACATACTCCAACACGGCTTCGGTCCTG GAAGTAAACGCCACTTTTTCTAGTGAAACCCGCTACTCAGTAGTCCGCAGACATTTACAATGTTGTTCCACCAAC GGGATAATAAGCTGATAGTAAGAAGCTCGGGATCTATGGAACGACAAGTAGAGTTGAATATAACTGCAAACAGTA CCGAGTCGTCGGTTTTTCGGTTTTCTTGCCCCTGATTAAACGCGGAGTACTCCGTACTGAGTACAGAGTAGCTAG ACATAAATAGGATGTCCAGATAAGCCTTGACATTGAACGCACACTGCCTGGGCACGAAATCACTAAAAATGCAAC CCGGGCGCACATGGTTGCCGAATTTGCAAAGTAACCCCGAGGTTAATATATTAATGTTAAGACCTAGACTTGA |