© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1846.t1 |
| Gene name | |
| Location | scaffold_02:972490..973931 |
| Strand | - |
| Gene length (bp) | 1441 |
| Transcript length (bp) | 1263 |
| Coding sequence length (bp) | 1263 |
| Protein length (aa) | 421 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 4.5E-18 | 334 | 400 |
| PF00487 | FA_desaturase | Fatty acid desaturase | 5.5E-16 | 58 | 272 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 27 | 49 | 22 |
| 2 | 56 | 78 | 22 |
| 3 | 88 | 110 | 22 |
| 4 | 171 | 193 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.76 | 5.83 | 21.69 |
| 5d_25C | Five days - 25 degrees Celsius | 5.47 | 1.68 | 9.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 9.62 | 3.53 | 15.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.59 | 3.11 | 14.07 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.10 | 1.89 | 10.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.39 | 0.73 | 6.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.003625 | yes |
| 3d_25C | 7d_25C | 0.342250 | no |
| 3d_25C | 7d_15C | 0.012303 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.181913 | no |
| 5d_25C | 7d_25C | 0.130858 | no |
| 5d_25C | 7d_15C | 0.836975 | no |
| 5d_25C | 7d_30C | 0.275777 | no |
| 5d_25C | 10d_25C | 0.244062 | no |
| 7d_25C | 7d_15C | 0.238123 | no |
| 7d_25C | 7d_30C | 0.007091 | yes |
| 7d_25C | 10d_25C | 0.823867 | no |
| 7d_15C | 7d_30C | 0.162182 | no |
| 7d_15C | 10d_25C | 0.404198 | no |
| 7d_30C | 10d_25C | 0.015833 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1846.t1 MAKPEPSGGKQHISEKPVTLGNWYQHVNWVNTTLILIVPVGGLIAACYTPLRAATAAWAILYYFWTGLGITAGYH RLWAHRSYEAVLPVRIFLACVGGGAVQGSIRWWSSKHRAHHRWTDTVKDPYSVMKGLWYSHFMWMVLNQNPKNKG RTDISDLNEDPVVVWQHKHYGSVILVFGMLFPMLVAGLGWGDWKGGLVYAGILRFSFVQQATFCVNSLAHWLGEQ PFDDRNSPRDHVVTALITLGEGYHNFHHEFPSDYRNAIQWWQYDPTKWSIWMWKQLGLATNLKEFRANEIEKGRV QQLQKKLDQKRAKLDWGVPLDQLPVIDWDDFIAEAQSGKALVAIAGVVHDVTDFIKEHPGGKTLISSAIGKDATA IFNGGVYTHSNAAHNLLSSMRVGVIRGGGEVEIWRHQNNQKGVYV* |
| Coding | >Pro_DTO377G3_2|g1846.t1 ATGGCGAAACCCGAGCCAAGTGGTGGAAAGCAGCATATCAGCGAGAAGCCTGTCACACTCGGTAACTGGTACCAG CATGTCAACTGGGTCAACACAACCCTCATCCTGATCGTACCCGTCGGTGGCCTCATCGCTGCATGCTACACACCG CTGAGGGCAGCCACTGCTGCTTGGGCAATTCTCTACTACTTCTGGACCGGACTGGGCATCACTGCCGGCTACCAT CGTCTGTGGGCGCACCGATCCTACGAAGCTGTCCTTCCAGTCAGAATATTCCTTGCATGCGTCGGCGGTGGCGCC GTCCAAGGGTCGATCCGGTGGTGGAGCAGTAAACACAGGGCACACCATCGATGGACCGACACAGTGAAGGACCCA TACAGCGTCATGAAGGGCCTCTGGTATTCGCATTTTATGTGGATGGTTCTGAACCAAAACCCAAAGAACAAAGGC AGGACCGATATCTCCGACTTGAACGAGGATCCCGTCGTCGTCTGGCAGCACAAGCATTATGGATCGGTCATCTTG GTTTTCGGGATGTTGTTCCCTATGCTCGTTGCTGGCCTGGGATGGGGTGATTGGAAGGGTGGTCTTGTATATGCT GGCATTCTTCGGTTCTCGTTTGTGCAGCAAGCCACCTTCTGCGTCAATTCTCTCGCCCATTGGTTGGGTGAGCAG CCATTCGATGACAGGAACTCCCCTCGCGATCACGTCGTTACCGCACTGATCACTCTCGGCGAAGGTTACCACAAC TTCCACCACGAGTTCCCCTCCGACTACCGCAATGCCATCCAATGGTGGCAGTACGATCCTACCAAGTGGTCAATC TGGATGTGGAAGCAGCTCGGTCTGGCAACCAACCTCAAGGAGTTCCGAGCCAACGAAATCGAGAAGGGCCGTGTG CAACAACTACAGAAGAAGCTCGACCAGAAGCGCGCCAAGCTTGATTGGGGTGTTCCTCTAGATCAGCTGCCTGTT ATCGACTGGGACGATTTCATTGCTGAAGCTCAGAGTGGCAAAGCTCTAGTTGCCATTGCCGGTGTTGTTCACGAC GTGACCGACTTTATCAAGGAACACCCTGGTGGTAAAACCCTCATTTCATCGGCCATTGGGAAGGATGCTACTGCC ATATTCAACGGTGGTGTCTACACTCACTCCAATGCCGCCCACAATTTGCTTTCTTCCATGCGGGTTGGGGTGATT CGCGGTGGTGGTGAGGTTGAGATTTGGCGTCACCAAAACAACCAAAAGGGTGTTTATGTTTAA |
| Transcript | >Pro_DTO377G3_2|g1846.t1 ATGGCGAAACCCGAGCCAAGTGGTGGAAAGCAGCATATCAGCGAGAAGCCTGTCACACTCGGTAACTGGTACCAG CATGTCAACTGGGTCAACACAACCCTCATCCTGATCGTACCCGTCGGTGGCCTCATCGCTGCATGCTACACACCG CTGAGGGCAGCCACTGCTGCTTGGGCAATTCTCTACTACTTCTGGACCGGACTGGGCATCACTGCCGGCTACCAT CGTCTGTGGGCGCACCGATCCTACGAAGCTGTCCTTCCAGTCAGAATATTCCTTGCATGCGTCGGCGGTGGCGCC GTCCAAGGGTCGATCCGGTGGTGGAGCAGTAAACACAGGGCACACCATCGATGGACCGACACAGTGAAGGACCCA TACAGCGTCATGAAGGGCCTCTGGTATTCGCATTTTATGTGGATGGTTCTGAACCAAAACCCAAAGAACAAAGGC AGGACCGATATCTCCGACTTGAACGAGGATCCCGTCGTCGTCTGGCAGCACAAGCATTATGGATCGGTCATCTTG GTTTTCGGGATGTTGTTCCCTATGCTCGTTGCTGGCCTGGGATGGGGTGATTGGAAGGGTGGTCTTGTATATGCT GGCATTCTTCGGTTCTCGTTTGTGCAGCAAGCCACCTTCTGCGTCAATTCTCTCGCCCATTGGTTGGGTGAGCAG CCATTCGATGACAGGAACTCCCCTCGCGATCACGTCGTTACCGCACTGATCACTCTCGGCGAAGGTTACCACAAC TTCCACCACGAGTTCCCCTCCGACTACCGCAATGCCATCCAATGGTGGCAGTACGATCCTACCAAGTGGTCAATC TGGATGTGGAAGCAGCTCGGTCTGGCAACCAACCTCAAGGAGTTCCGAGCCAACGAAATCGAGAAGGGCCGTGTG CAACAACTACAGAAGAAGCTCGACCAGAAGCGCGCCAAGCTTGATTGGGGTGTTCCTCTAGATCAGCTGCCTGTT ATCGACTGGGACGATTTCATTGCTGAAGCTCAGAGTGGCAAAGCTCTAGTTGCCATTGCCGGTGTTGTTCACGAC GTGACCGACTTTATCAAGGAACACCCTGGTGGTAAAACCCTCATTTCATCGGCCATTGGGAAGGATGCTACTGCC ATATTCAACGGTGGTGTCTACACTCACTCCAATGCCGCCCACAATTTGCTTTCTTCCATGCGGGTTGGGGTGATT CGCGGTGGTGGTGAGGTTGAGATTTGGCGTCACCAAAACAACCAAAAGGGTGTTTATGTTTAA |
| Gene | >Pro_DTO377G3_2|g1846.t1 ATGGCGAAACCCGAGCCAAGTGGTGGAAAGCAGCATATCAGCGAGAAGCCTGTCACACTCGGTAACTGGTACCAG CATGTCAACTGGGTCAACACAACCCTCATCCTGATCGTACCCGTCGGTGGCCTCATCGCTGCATGCTACACACCG CTGAGGGCAGCCACTGCTGCTTGGGCAATTCTCTACTACTTCTGGACCGGACTGGGCATCACTGCCGGCTACCAT CGTCTGTGGGCGCACCGATCCTACGAAGCGTAAGCCTGCTACTGCCTCACCCTAGTTGCTTCGGATGAAGCATTG ACTAACATCTGATATCTCTAGTGTCCTTCCAGTCAGAATATTCCTTGCATGCGTCGGCGGTGGCGCCGTCCAAGG GTCGATCCGGTGGTGGAGCAGTAAACACAGGGCACACCATCGATGGACCGACACAGTGAAGGACCCATACAGCGT CATGAAGGGCCTCTGGTATTCGCATTTTATGTGGATGGTTCTGAACCAAAACCCAAAGAACAAAGGCAGGACCGA TATCTCCGACTTGAACGAGGATCCCGTCGTCGTCTGGCAGCACAAGCATTATGGATCGGTCATCTTGGTTTTCGG GATGTTGTTCCCTATGCTCGTTGCTGGCCTGGGATGGGGTGATTGGAAGGGTGGTCTTGTATATGCTGGCATTCT TCGGTTCTCGTTTGTGCAGCAAGCCACCTTCTGCGTCAATTCTCTCGCCCATTGGTTGGGTGAGCAGGTTAGTCA TTGTCCATATCCTGTTCTTGTCATATTTCCGTTCGCTCTGACACGCTTTAGCCATTCGATGACAGGAACTCCCCT CGCGATCACGTCGTTACCGCACTGATCACTCTCGGCGAAGGTTACCACAACTTCCACCACGAGGTAAGAAAATTG TTCCCTTATATTTACTTTGCATCCACTAAACTCTGACCAGTTCCCCTCCGACTACCGCAATGCCATCCAATGGTG GCAGTACGATCCTACCAAGTGGTCAATCTGGATGTGGAAGCAGCTCGGTCTGGCAACCAACCTCAAGGAGTTCCG AGCCAACGAAATCGAGAAGGGCCGTGTGCAACAACTACAGAAGAAGCTCGACCAGAAGCGCGCCAAGCTTGATTG GGGTGTTCCTCTAGATCAGCTGCCTGTTATCGACTGGGACGATTTCATTGCTGAAGCTCAGAGTGGCAAAGCTCT AGTTGCCATTGCCGGTGTTGTTCACGACGTGACCGACTTTATCAAGGAACACCCTGGTGGTAAAACCCTCATTTC ATCGGCCATTGGGAAGGATGCTACTGCCATATTCAACGGTGGTGTCTACACTCACTCCAATGCCGCCCACAATTT GCTTTCTTCCATGCGGGTTGGGGTGATTCGCGGTGGTGGTGAGGTTGAGATTTGGCGTCACCAAAACAACCAAAA GGGTGTTTATGTTTAA |