Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1846.t1
Gene name
Locationscaffold_02:972490..973931
Strand-
Gene length (bp)1441
Transcript length (bp)1263
Coding sequence length (bp)1263
Protein length (aa) 421

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain 4.5E-18 334 400
PF00487 FA_desaturase Fatty acid desaturase 5.5E-16 58 272

GO

GO Term Description Terminal node
GO:0006629 lipid metabolic process Yes
GO:0008150 biological_process No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 27 49 22
2 56 78 22
3 88 110 22
4 171 193 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 13.76 5.83 21.69
5d_25C Five days - 25 degrees Celsius 5.47 1.68 9.26
7d_25C Seven days - 25 degrees Celsius 9.62 3.53 15.71
10d_25C Ten days - 25 degrees Celsius 8.59 3.11 14.07
7d_15C Seven days - 15 degrees Celsius 6.10 1.89 10.32
7d_30C Seven days - 30 degrees Celsius 3.39 0.73 6.05

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.003625 yes
3d_25C 7d_25C 0.342250 no
3d_25C 7d_15C 0.012303 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.181913 no
5d_25C 7d_25C 0.130858 no
5d_25C 7d_15C 0.836975 no
5d_25C 7d_30C 0.275777 no
5d_25C 10d_25C 0.244062 no
7d_25C 7d_15C 0.238123 no
7d_25C 7d_30C 0.007091 yes
7d_25C 10d_25C 0.823867 no
7d_15C 7d_30C 0.162182 no
7d_15C 10d_25C 0.404198 no
7d_30C 10d_25C 0.015833 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1846.t1
MAKPEPSGGKQHISEKPVTLGNWYQHVNWVNTTLILIVPVGGLIAACYTPLRAATAAWAILYYFWTGLGITAGYH
RLWAHRSYEAVLPVRIFLACVGGGAVQGSIRWWSSKHRAHHRWTDTVKDPYSVMKGLWYSHFMWMVLNQNPKNKG
RTDISDLNEDPVVVWQHKHYGSVILVFGMLFPMLVAGLGWGDWKGGLVYAGILRFSFVQQATFCVNSLAHWLGEQ
PFDDRNSPRDHVVTALITLGEGYHNFHHEFPSDYRNAIQWWQYDPTKWSIWMWKQLGLATNLKEFRANEIEKGRV
QQLQKKLDQKRAKLDWGVPLDQLPVIDWDDFIAEAQSGKALVAIAGVVHDVTDFIKEHPGGKTLISSAIGKDATA
IFNGGVYTHSNAAHNLLSSMRVGVIRGGGEVEIWRHQNNQKGVYV*
Coding >Pro_DTO377G3_2|g1846.t1
ATGGCGAAACCCGAGCCAAGTGGTGGAAAGCAGCATATCAGCGAGAAGCCTGTCACACTCGGTAACTGGTACCAG
CATGTCAACTGGGTCAACACAACCCTCATCCTGATCGTACCCGTCGGTGGCCTCATCGCTGCATGCTACACACCG
CTGAGGGCAGCCACTGCTGCTTGGGCAATTCTCTACTACTTCTGGACCGGACTGGGCATCACTGCCGGCTACCAT
CGTCTGTGGGCGCACCGATCCTACGAAGCTGTCCTTCCAGTCAGAATATTCCTTGCATGCGTCGGCGGTGGCGCC
GTCCAAGGGTCGATCCGGTGGTGGAGCAGTAAACACAGGGCACACCATCGATGGACCGACACAGTGAAGGACCCA
TACAGCGTCATGAAGGGCCTCTGGTATTCGCATTTTATGTGGATGGTTCTGAACCAAAACCCAAAGAACAAAGGC
AGGACCGATATCTCCGACTTGAACGAGGATCCCGTCGTCGTCTGGCAGCACAAGCATTATGGATCGGTCATCTTG
GTTTTCGGGATGTTGTTCCCTATGCTCGTTGCTGGCCTGGGATGGGGTGATTGGAAGGGTGGTCTTGTATATGCT
GGCATTCTTCGGTTCTCGTTTGTGCAGCAAGCCACCTTCTGCGTCAATTCTCTCGCCCATTGGTTGGGTGAGCAG
CCATTCGATGACAGGAACTCCCCTCGCGATCACGTCGTTACCGCACTGATCACTCTCGGCGAAGGTTACCACAAC
TTCCACCACGAGTTCCCCTCCGACTACCGCAATGCCATCCAATGGTGGCAGTACGATCCTACCAAGTGGTCAATC
TGGATGTGGAAGCAGCTCGGTCTGGCAACCAACCTCAAGGAGTTCCGAGCCAACGAAATCGAGAAGGGCCGTGTG
CAACAACTACAGAAGAAGCTCGACCAGAAGCGCGCCAAGCTTGATTGGGGTGTTCCTCTAGATCAGCTGCCTGTT
ATCGACTGGGACGATTTCATTGCTGAAGCTCAGAGTGGCAAAGCTCTAGTTGCCATTGCCGGTGTTGTTCACGAC
GTGACCGACTTTATCAAGGAACACCCTGGTGGTAAAACCCTCATTTCATCGGCCATTGGGAAGGATGCTACTGCC
ATATTCAACGGTGGTGTCTACACTCACTCCAATGCCGCCCACAATTTGCTTTCTTCCATGCGGGTTGGGGTGATT
CGCGGTGGTGGTGAGGTTGAGATTTGGCGTCACCAAAACAACCAAAAGGGTGTTTATGTTTAA
Transcript >Pro_DTO377G3_2|g1846.t1
ATGGCGAAACCCGAGCCAAGTGGTGGAAAGCAGCATATCAGCGAGAAGCCTGTCACACTCGGTAACTGGTACCAG
CATGTCAACTGGGTCAACACAACCCTCATCCTGATCGTACCCGTCGGTGGCCTCATCGCTGCATGCTACACACCG
CTGAGGGCAGCCACTGCTGCTTGGGCAATTCTCTACTACTTCTGGACCGGACTGGGCATCACTGCCGGCTACCAT
CGTCTGTGGGCGCACCGATCCTACGAAGCTGTCCTTCCAGTCAGAATATTCCTTGCATGCGTCGGCGGTGGCGCC
GTCCAAGGGTCGATCCGGTGGTGGAGCAGTAAACACAGGGCACACCATCGATGGACCGACACAGTGAAGGACCCA
TACAGCGTCATGAAGGGCCTCTGGTATTCGCATTTTATGTGGATGGTTCTGAACCAAAACCCAAAGAACAAAGGC
AGGACCGATATCTCCGACTTGAACGAGGATCCCGTCGTCGTCTGGCAGCACAAGCATTATGGATCGGTCATCTTG
GTTTTCGGGATGTTGTTCCCTATGCTCGTTGCTGGCCTGGGATGGGGTGATTGGAAGGGTGGTCTTGTATATGCT
GGCATTCTTCGGTTCTCGTTTGTGCAGCAAGCCACCTTCTGCGTCAATTCTCTCGCCCATTGGTTGGGTGAGCAG
CCATTCGATGACAGGAACTCCCCTCGCGATCACGTCGTTACCGCACTGATCACTCTCGGCGAAGGTTACCACAAC
TTCCACCACGAGTTCCCCTCCGACTACCGCAATGCCATCCAATGGTGGCAGTACGATCCTACCAAGTGGTCAATC
TGGATGTGGAAGCAGCTCGGTCTGGCAACCAACCTCAAGGAGTTCCGAGCCAACGAAATCGAGAAGGGCCGTGTG
CAACAACTACAGAAGAAGCTCGACCAGAAGCGCGCCAAGCTTGATTGGGGTGTTCCTCTAGATCAGCTGCCTGTT
ATCGACTGGGACGATTTCATTGCTGAAGCTCAGAGTGGCAAAGCTCTAGTTGCCATTGCCGGTGTTGTTCACGAC
GTGACCGACTTTATCAAGGAACACCCTGGTGGTAAAACCCTCATTTCATCGGCCATTGGGAAGGATGCTACTGCC
ATATTCAACGGTGGTGTCTACACTCACTCCAATGCCGCCCACAATTTGCTTTCTTCCATGCGGGTTGGGGTGATT
CGCGGTGGTGGTGAGGTTGAGATTTGGCGTCACCAAAACAACCAAAAGGGTGTTTATGTTTAA
Gene >Pro_DTO377G3_2|g1846.t1
ATGGCGAAACCCGAGCCAAGTGGTGGAAAGCAGCATATCAGCGAGAAGCCTGTCACACTCGGTAACTGGTACCAG
CATGTCAACTGGGTCAACACAACCCTCATCCTGATCGTACCCGTCGGTGGCCTCATCGCTGCATGCTACACACCG
CTGAGGGCAGCCACTGCTGCTTGGGCAATTCTCTACTACTTCTGGACCGGACTGGGCATCACTGCCGGCTACCAT
CGTCTGTGGGCGCACCGATCCTACGAAGCGTAAGCCTGCTACTGCCTCACCCTAGTTGCTTCGGATGAAGCATTG
ACTAACATCTGATATCTCTAGTGTCCTTCCAGTCAGAATATTCCTTGCATGCGTCGGCGGTGGCGCCGTCCAAGG
GTCGATCCGGTGGTGGAGCAGTAAACACAGGGCACACCATCGATGGACCGACACAGTGAAGGACCCATACAGCGT
CATGAAGGGCCTCTGGTATTCGCATTTTATGTGGATGGTTCTGAACCAAAACCCAAAGAACAAAGGCAGGACCGA
TATCTCCGACTTGAACGAGGATCCCGTCGTCGTCTGGCAGCACAAGCATTATGGATCGGTCATCTTGGTTTTCGG
GATGTTGTTCCCTATGCTCGTTGCTGGCCTGGGATGGGGTGATTGGAAGGGTGGTCTTGTATATGCTGGCATTCT
TCGGTTCTCGTTTGTGCAGCAAGCCACCTTCTGCGTCAATTCTCTCGCCCATTGGTTGGGTGAGCAGGTTAGTCA
TTGTCCATATCCTGTTCTTGTCATATTTCCGTTCGCTCTGACACGCTTTAGCCATTCGATGACAGGAACTCCCCT
CGCGATCACGTCGTTACCGCACTGATCACTCTCGGCGAAGGTTACCACAACTTCCACCACGAGGTAAGAAAATTG
TTCCCTTATATTTACTTTGCATCCACTAAACTCTGACCAGTTCCCCTCCGACTACCGCAATGCCATCCAATGGTG
GCAGTACGATCCTACCAAGTGGTCAATCTGGATGTGGAAGCAGCTCGGTCTGGCAACCAACCTCAAGGAGTTCCG
AGCCAACGAAATCGAGAAGGGCCGTGTGCAACAACTACAGAAGAAGCTCGACCAGAAGCGCGCCAAGCTTGATTG
GGGTGTTCCTCTAGATCAGCTGCCTGTTATCGACTGGGACGATTTCATTGCTGAAGCTCAGAGTGGCAAAGCTCT
AGTTGCCATTGCCGGTGTTGTTCACGACGTGACCGACTTTATCAAGGAACACCCTGGTGGTAAAACCCTCATTTC
ATCGGCCATTGGGAAGGATGCTACTGCCATATTCAACGGTGGTGTCTACACTCACTCCAATGCCGCCCACAATTT
GCTTTCTTCCATGCGGGTTGGGGTGATTCGCGGTGGTGGTGAGGTTGAGATTTGGCGTCACCAAAACAACCAAAA
GGGTGTTTATGTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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