Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1833.t1
Gene name
Locationscaffold_02:942909..944760
Strand-
Gene length (bp)1851
Transcript length (bp)1851
Coding sequence length (bp)1851
Protein length (aa) 617

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01416 PseudoU_synth_1 tRNA pseudouridine synthase 7.2E-32 329 472

GO

GO Term Description Terminal node
GO:0001522 pseudouridine synthesis Yes
GO:0003723 RNA binding Yes
GO:0009982 pseudouridine synthase activity Yes
GO:0009451 RNA modification Yes
GO:0005488 binding No
GO:0003824 catalytic activity No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0003676 nucleic acid binding No
GO:0043170 macromolecule metabolic process No
GO:0008152 metabolic process No
GO:0044238 primary metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043412 macromolecule modification No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0016866 intramolecular transferase activity No
GO:0097159 organic cyclic compound binding No
GO:0016853 isomerase activity No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 28.22 16.16 40.29
5d_25C Five days - 25 degrees Celsius 33.89 19.99 47.79
7d_25C Seven days - 25 degrees Celsius 36.39 21.46 51.33
10d_25C Ten days - 25 degrees Celsius 40.44 24.20 56.68
7d_15C Seven days - 15 degrees Celsius 26.00 14.69 37.31
7d_30C Seven days - 30 degrees Celsius 45.42 27.27 63.57

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.509457 no
3d_25C 7d_25C 0.323054 no
3d_25C 7d_15C 0.807348 no
3d_25C 7d_30C 0.028409 yes
3d_25C 10d_25C 0.124424 no
5d_25C 7d_25C 0.825960 no
5d_25C 7d_15C 0.299802 no
5d_25C 7d_30C 0.211575 no
5d_25C 10d_25C 0.504073 no
7d_25C 7d_15C 0.167100 no
7d_25C 7d_30C 0.377202 no
7d_25C 10d_25C 0.725294 no
7d_15C 7d_30C 0.009770 yes
7d_15C 10d_25C 0.050897 no
7d_30C 10d_25C 0.694125 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1833.t1
MEDTKSKGQPDYSAWSNSSLIARITELERQLSSKTTEFTAPTEESLQTPCSSSAPIATDVHEAAIPLTEPFNPST
KRPHSPQDSDSTPVLAPTRLVKAPKPPRPERSFDPSKYTTRFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEIMW
KALRRTKLISPGTTSDLEPTERGERVPMRPYHLYWDGCDYSKAGRTDKGVSAFGQVIGLRVRSQRPMPKTPTEGE
DAMRVDSGSTEKEWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFAPTPGPL
GFQNRAENGNGPRAEFREGWLDIEAMREAAKHFEGMHDFRNFCKLDTNKQIDNFERIILHSSIEAVNPKVNPVGY
VGQPGFQAKEGCVPEPDLTTPNTVSQSIPQVYSFNLHGSAFLWHQVRHMVAILFLVGQGFESPSIVPELLDITKN
PQKPIYAMADDAPLVLWDCIFPDLNSDSRQDSLNWVYAGDNAANCKGTAKGDSKFGLRGTVESLWAVWRKRKIDE
ILAGALLDLTVSQGDQNVENLDKQWQKAGYSKRGHRGAKVWCGGNDTVVGGKYIRVDQKGKMETVEVQNAKGLLT
KQRRLARMEGAQAASE*
Coding >Pro_DTO377G3_2|g1833.t1
ATGGAGGACACTAAAAGCAAGGGCCAACCCGACTACTCGGCCTGGAGTAATTCCAGCCTGATCGCGCGCATAACA
GAGTTAGAGCGCCAGCTGTCCTCTAAGACGACAGAGTTCACAGCGCCAACCGAAGAATCGTTGCAGACACCCTGC
TCTTCTTCCGCGCCCATCGCTACCGACGTCCACGAGGCTGCGATTCCTCTTACCGAGCCCTTCAATCCTTCTACG
AAGCGACCACACTCTCCTCAAGATAGCGACAGTACCCCAGTGCTTGCGCCGACGCGGCTTGTCAAAGCCCCGAAA
CCTCCAAGACCCGAGCGCAGCTTCGACCCCTCCAAATACACAACGCGGTTTATTGCGCTCAAGTTCGCATATCTG
GGACAGGCATACAATGGGCTCGAACATACAAACGGCAATACCACGCCTCTGCCTACCGTTGAAGAGATTATGTGG
AAGGCATTGCGGCGTACAAAACTCATCTCCCCCGGCACCACCTCTGATCTTGAGCCGACCGAAAGAGGGGAGCGC
GTCCCCATGCGCCCCTACCACCTTTATTGGGATGGATGCGATTACTCCAAAGCAGGTCGTACCGATAAGGGCGTG
AGCGCTTTTGGGCAGGTTATTGGACTGCGGGTCCGCAGTCAACGACCCATGCCCAAGACTCCCACCGAGGGCGAG
GATGCGATGCGCGTTGACTCGGGATCTACTGAAAAGGAGTGGGATGATGTAGCCGATGAGATGAACTATATCAAT
GTTCTAAACAGGGTGCTTCCGGAAGACATCCGGGTCCTGGCTTGGTGTCCTAACCCGCCGCCTGGTTTCGATGCC
CGCTTCTCCTGCCGTGAACGTCGGTACAAGTACTTCTTCACCAACCCCGCGTTCGCTCCCACACCCGGGCCCCTT
GGGTTCCAGAACCGCGCAGAGAACGGCAATGGCCCGCGTGCTGAGTTCCGTGAGGGCTGGCTCGACATTGAGGCT
ATGCGCGAGGCAGCTAAGCATTTCGAGGGTATGCATGACTTCCGGAATTTCTGCAAGTTGGACACCAACAAGCAG
ATTGATAATTTCGAACGCATTATCCTTCACTCTAGTATCGAAGCCGTCAATCCCAAGGTCAACCCCGTGGGGTAT
GTTGGCCAACCTGGATTCCAGGCCAAAGAGGGTTGTGTGCCCGAACCGGATTTGACGACTCCCAATACGGTTTCT
CAAAGTATCCCTCAGGTCTACTCGTTTAACCTCCACGGTTCTGCCTTCTTGTGGCACCAGGTGCGCCACATGGTT
GCAATTCTGTTCCTAGTCGGACAGGGATTCGAGTCCCCATCTATCGTCCCTGAACTGCTGGACATTACCAAGAAT
CCACAAAAGCCAATATATGCAATGGCTGATGATGCTCCGCTGGTGCTTTGGGACTGCATTTTCCCCGATCTGAAT
TCCGACAGTCGCCAGGATTCCTTGAACTGGGTCTATGCTGGTGACAATGCTGCAAACTGCAAGGGAACCGCCAAG
GGTGATAGCAAATTCGGGCTGCGGGGTACCGTTGAAAGTTTGTGGGCCGTTTGGAGAAAGCGAAAGATAGATGAG
ATTCTAGCGGGTGCTCTGCTAGACTTGACTGTCAGCCAGGGTGACCAGAACGTGGAAAATCTTGACAAACAGTGG
CAAAAGGCGGGTTATTCCAAAAGAGGACACAGAGGTGCCAAGGTCTGGTGTGGTGGAAACGATACTGTTGTTGGC
GGGAAATACATCCGTGTCGACCAGAAGGGTAAGATGGAGACCGTGGAAGTTCAAAATGCCAAGGGACTTCTCACA
AAGCAGCGAAGACTAGCAAGGATGGAGGGTGCACAAGCGGCATCGGAATGA
Transcript >Pro_DTO377G3_2|g1833.t1
ATGGAGGACACTAAAAGCAAGGGCCAACCCGACTACTCGGCCTGGAGTAATTCCAGCCTGATCGCGCGCATAACA
GAGTTAGAGCGCCAGCTGTCCTCTAAGACGACAGAGTTCACAGCGCCAACCGAAGAATCGTTGCAGACACCCTGC
TCTTCTTCCGCGCCCATCGCTACCGACGTCCACGAGGCTGCGATTCCTCTTACCGAGCCCTTCAATCCTTCTACG
AAGCGACCACACTCTCCTCAAGATAGCGACAGTACCCCAGTGCTTGCGCCGACGCGGCTTGTCAAAGCCCCGAAA
CCTCCAAGACCCGAGCGCAGCTTCGACCCCTCCAAATACACAACGCGGTTTATTGCGCTCAAGTTCGCATATCTG
GGACAGGCATACAATGGGCTCGAACATACAAACGGCAATACCACGCCTCTGCCTACCGTTGAAGAGATTATGTGG
AAGGCATTGCGGCGTACAAAACTCATCTCCCCCGGCACCACCTCTGATCTTGAGCCGACCGAAAGAGGGGAGCGC
GTCCCCATGCGCCCCTACCACCTTTATTGGGATGGATGCGATTACTCCAAAGCAGGTCGTACCGATAAGGGCGTG
AGCGCTTTTGGGCAGGTTATTGGACTGCGGGTCCGCAGTCAACGACCCATGCCCAAGACTCCCACCGAGGGCGAG
GATGCGATGCGCGTTGACTCGGGATCTACTGAAAAGGAGTGGGATGATGTAGCCGATGAGATGAACTATATCAAT
GTTCTAAACAGGGTGCTTCCGGAAGACATCCGGGTCCTGGCTTGGTGTCCTAACCCGCCGCCTGGTTTCGATGCC
CGCTTCTCCTGCCGTGAACGTCGGTACAAGTACTTCTTCACCAACCCCGCGTTCGCTCCCACACCCGGGCCCCTT
GGGTTCCAGAACCGCGCAGAGAACGGCAATGGCCCGCGTGCTGAGTTCCGTGAGGGCTGGCTCGACATTGAGGCT
ATGCGCGAGGCAGCTAAGCATTTCGAGGGTATGCATGACTTCCGGAATTTCTGCAAGTTGGACACCAACAAGCAG
ATTGATAATTTCGAACGCATTATCCTTCACTCTAGTATCGAAGCCGTCAATCCCAAGGTCAACCCCGTGGGGTAT
GTTGGCCAACCTGGATTCCAGGCCAAAGAGGGTTGTGTGCCCGAACCGGATTTGACGACTCCCAATACGGTTTCT
CAAAGTATCCCTCAGGTCTACTCGTTTAACCTCCACGGTTCTGCCTTCTTGTGGCACCAGGTGCGCCACATGGTT
GCAATTCTGTTCCTAGTCGGACAGGGATTCGAGTCCCCATCTATCGTCCCTGAACTGCTGGACATTACCAAGAAT
CCACAAAAGCCAATATATGCAATGGCTGATGATGCTCCGCTGGTGCTTTGGGACTGCATTTTCCCCGATCTGAAT
TCCGACAGTCGCCAGGATTCCTTGAACTGGGTCTATGCTGGTGACAATGCTGCAAACTGCAAGGGAACCGCCAAG
GGTGATAGCAAATTCGGGCTGCGGGGTACCGTTGAAAGTTTGTGGGCCGTTTGGAGAAAGCGAAAGATAGATGAG
ATTCTAGCGGGTGCTCTGCTAGACTTGACTGTCAGCCAGGGTGACCAGAACGTGGAAAATCTTGACAAACAGTGG
CAAAAGGCGGGTTATTCCAAAAGAGGACACAGAGGTGCCAAGGTCTGGTGTGGTGGAAACGATACTGTTGTTGGC
GGGAAATACATCCGTGTCGACCAGAAGGGTAAGATGGAGACCGTGGAAGTTCAAAATGCCAAGGGACTTCTCACA
AAGCAGCGAAGACTAGCAAGGATGGAGGGTGCACAAGCGGCATCGGAATGA
Gene >Pro_DTO377G3_2|g1833.t1
ATGGAGGACACTAAAAGCAAGGGCCAACCCGACTACTCGGCCTGGAGTAATTCCAGCCTGATCGCGCGCATAACA
GAGTTAGAGCGCCAGCTGTCCTCTAAGACGACAGAGTTCACAGCGCCAACCGAAGAATCGTTGCAGACACCCTGC
TCTTCTTCCGCGCCCATCGCTACCGACGTCCACGAGGCTGCGATTCCTCTTACCGAGCCCTTCAATCCTTCTACG
AAGCGACCACACTCTCCTCAAGATAGCGACAGTACCCCAGTGCTTGCGCCGACGCGGCTTGTCAAAGCCCCGAAA
CCTCCAAGACCCGAGCGCAGCTTCGACCCCTCCAAATACACAACGCGGTTTATTGCGCTCAAGTTCGCATATCTG
GGACAGGCATACAATGGGCTCGAACATACAAACGGCAATACCACGCCTCTGCCTACCGTTGAAGAGATTATGTGG
AAGGCATTGCGGCGTACAAAACTCATCTCCCCCGGCACCACCTCTGATCTTGAGCCGACCGAAAGAGGGGAGCGC
GTCCCCATGCGCCCCTACCACCTTTATTGGGATGGATGCGATTACTCCAAAGCAGGTCGTACCGATAAGGGCGTG
AGCGCTTTTGGGCAGGTTATTGGACTGCGGGTCCGCAGTCAACGACCCATGCCCAAGACTCCCACCGAGGGCGAG
GATGCGATGCGCGTTGACTCGGGATCTACTGAAAAGGAGTGGGATGATGTAGCCGATGAGATGAACTATATCAAT
GTTCTAAACAGGGTGCTTCCGGAAGACATCCGGGTCCTGGCTTGGTGTCCTAACCCGCCGCCTGGTTTCGATGCC
CGCTTCTCCTGCCGTGAACGTCGGTACAAGTACTTCTTCACCAACCCCGCGTTCGCTCCCACACCCGGGCCCCTT
GGGTTCCAGAACCGCGCAGAGAACGGCAATGGCCCGCGTGCTGAGTTCCGTGAGGGCTGGCTCGACATTGAGGCT
ATGCGCGAGGCAGCTAAGCATTTCGAGGGTATGCATGACTTCCGGAATTTCTGCAAGTTGGACACCAACAAGCAG
ATTGATAATTTCGAACGCATTATCCTTCACTCTAGTATCGAAGCCGTCAATCCCAAGGTCAACCCCGTGGGGTAT
GTTGGCCAACCTGGATTCCAGGCCAAAGAGGGTTGTGTGCCCGAACCGGATTTGACGACTCCCAATACGGTTTCT
CAAAGTATCCCTCAGGTCTACTCGTTTAACCTCCACGGTTCTGCCTTCTTGTGGCACCAGGTGCGCCACATGGTT
GCAATTCTGTTCCTAGTCGGACAGGGATTCGAGTCCCCATCTATCGTCCCTGAACTGCTGGACATTACCAAGAAT
CCACAAAAGCCAATATATGCAATGGCTGATGATGCTCCGCTGGTGCTTTGGGACTGCATTTTCCCCGATCTGAAT
TCCGACAGTCGCCAGGATTCCTTGAACTGGGTCTATGCTGGTGACAATGCTGCAAACTGCAAGGGAACCGCCAAG
GGTGATAGCAAATTCGGGCTGCGGGGTACCGTTGAAAGTTTGTGGGCCGTTTGGAGAAAGCGAAAGATAGATGAG
ATTCTAGCGGGTGCTCTGCTAGACTTGACTGTCAGCCAGGGTGACCAGAACGTGGAAAATCTTGACAAACAGTGG
CAAAAGGCGGGTTATTCCAAAAGAGGACACAGAGGTGCCAAGGTCTGGTGTGGTGGAAACGATACTGTTGTTGGC
GGGAAATACATCCGTGTCGACCAGAAGGGTAAGATGGAGACCGTGGAAGTTCAAAATGCCAAGGGACTTCTCACA
AAGCAGCGAAGACTAGCAAGGATGGAGGGTGCACAAGCGGCATCGGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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