Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g1833.t1
Gene name
Location	scaffold_02:942909..944760
Strand	-
Gene length (bp)	1851
Transcript length (bp)	1851
Coding sequence length (bp)	1851
Protein length (aa)	617

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01416	PseudoU_synth_1	tRNA pseudouridine synthase	7.2E-32	329	472

GO

GO Term	Description	Terminal node
GO:0001522	pseudouridine synthesis	Yes
GO:0003723	RNA binding	Yes
GO:0009982	pseudouridine synthase activity	Yes
GO:0009451	RNA modification	Yes
GO:0005488	binding	No
GO:0003824	catalytic activity	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0003676	nucleic acid binding	No
GO:0043170	macromolecule metabolic process	No
GO:0008152	metabolic process	No
GO:0044238	primary metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0043412	macromolecule modification	No
GO:0046483	heterocycle metabolic process	No
GO:0003674	molecular_function	No
GO:0006807	nitrogen compound metabolic process	No
GO:0016866	intramolecular transferase activity	No
GO:0097159	organic cyclic compound binding	No
GO:0016853	isomerase activity	No
GO:1901363	heterocyclic compound binding	No
GO:0090304	nucleic acid metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g1833.t1 MEDTKSKGQPDYSAWSNSSLIARITELERQLSSKTTEFTAPTEESLQTPCSSSAPIATDVHEAAIPLTEPFNPST KRPHSPQDSDSTPVLAPTRLVKAPKPPRPERSFDPSKYTTRFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEIMW KALRRTKLISPGTTSDLEPTERGERVPMRPYHLYWDGCDYSKAGRTDKGVSAFGQVIGLRVRSQRPMPKTPTEGE DAMRVDSGSTEKEWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFAPTPGPL GFQNRAENGNGPRAEFREGWLDIEAMREAAKHFEGMHDFRNFCKLDTNKQIDNFERIILHSSIEAVNPKVNPVGY VGQPGFQAKEGCVPEPDLTTPNTVSQSIPQVYSFNLHGSAFLWHQVRHMVAILFLVGQGFESPSIVPELLDITKN PQKPIYAMADDAPLVLWDCIFPDLNSDSRQDSLNWVYAGDNAANCKGTAKGDSKFGLRGTVESLWAVWRKRKIDE ILAGALLDLTVSQGDQNVENLDKQWQKAGYSKRGHRGAKVWCGGNDTVVGGKYIRVDQKGKMETVEVQNAKGLLT KQRRLARMEGAQAASE*
Coding	>Pro_DTO377G3_2\|g1833.t1 ATGGAGGACACTAAAAGCAAGGGCCAACCCGACTACTCGGCCTGGAGTAATTCCAGCCTGATCGCGCGCATAACA GAGTTAGAGCGCCAGCTGTCCTCTAAGACGACAGAGTTCACAGCGCCAACCGAAGAATCGTTGCAGACACCCTGC TCTTCTTCCGCGCCCATCGCTACCGACGTCCACGAGGCTGCGATTCCTCTTACCGAGCCCTTCAATCCTTCTACG AAGCGACCACACTCTCCTCAAGATAGCGACAGTACCCCAGTGCTTGCGCCGACGCGGCTTGTCAAAGCCCCGAAA CCTCCAAGACCCGAGCGCAGCTTCGACCCCTCCAAATACACAACGCGGTTTATTGCGCTCAAGTTCGCATATCTG GGACAGGCATACAATGGGCTCGAACATACAAACGGCAATACCACGCCTCTGCCTACCGTTGAAGAGATTATGTGG AAGGCATTGCGGCGTACAAAACTCATCTCCCCCGGCACCACCTCTGATCTTGAGCCGACCGAAAGAGGGGAGCGC GTCCCCATGCGCCCCTACCACCTTTATTGGGATGGATGCGATTACTCCAAAGCAGGTCGTACCGATAAGGGCGTG AGCGCTTTTGGGCAGGTTATTGGACTGCGGGTCCGCAGTCAACGACCCATGCCCAAGACTCCCACCGAGGGCGAG GATGCGATGCGCGTTGACTCGGGATCTACTGAAAAGGAGTGGGATGATGTAGCCGATGAGATGAACTATATCAAT GTTCTAAACAGGGTGCTTCCGGAAGACATCCGGGTCCTGGCTTGGTGTCCTAACCCGCCGCCTGGTTTCGATGCC CGCTTCTCCTGCCGTGAACGTCGGTACAAGTACTTCTTCACCAACCCCGCGTTCGCTCCCACACCCGGGCCCCTT GGGTTCCAGAACCGCGCAGAGAACGGCAATGGCCCGCGTGCTGAGTTCCGTGAGGGCTGGCTCGACATTGAGGCT ATGCGCGAGGCAGCTAAGCATTTCGAGGGTATGCATGACTTCCGGAATTTCTGCAAGTTGGACACCAACAAGCAG ATTGATAATTTCGAACGCATTATCCTTCACTCTAGTATCGAAGCCGTCAATCCCAAGGTCAACCCCGTGGGGTAT GTTGGCCAACCTGGATTCCAGGCCAAAGAGGGTTGTGTGCCCGAACCGGATTTGACGACTCCCAATACGGTTTCT CAAAGTATCCCTCAGGTCTACTCGTTTAACCTCCACGGTTCTGCCTTCTTGTGGCACCAGGTGCGCCACATGGTT GCAATTCTGTTCCTAGTCGGACAGGGATTCGAGTCCCCATCTATCGTCCCTGAACTGCTGGACATTACCAAGAAT CCACAAAAGCCAATATATGCAATGGCTGATGATGCTCCGCTGGTGCTTTGGGACTGCATTTTCCCCGATCTGAAT TCCGACAGTCGCCAGGATTCCTTGAACTGGGTCTATGCTGGTGACAATGCTGCAAACTGCAAGGGAACCGCCAAG GGTGATAGCAAATTCGGGCTGCGGGGTACCGTTGAAAGTTTGTGGGCCGTTTGGAGAAAGCGAAAGATAGATGAG ATTCTAGCGGGTGCTCTGCTAGACTTGACTGTCAGCCAGGGTGACCAGAACGTGGAAAATCTTGACAAACAGTGG CAAAAGGCGGGTTATTCCAAAAGAGGACACAGAGGTGCCAAGGTCTGGTGTGGTGGAAACGATACTGTTGTTGGC GGGAAATACATCCGTGTCGACCAGAAGGGTAAGATGGAGACCGTGGAAGTTCAAAATGCCAAGGGACTTCTCACA AAGCAGCGAAGACTAGCAAGGATGGAGGGTGCACAAGCGGCATCGGAATGA
Transcript	>Pro_DTO377G3_2\|g1833.t1 ATGGAGGACACTAAAAGCAAGGGCCAACCCGACTACTCGGCCTGGAGTAATTCCAGCCTGATCGCGCGCATAACA GAGTTAGAGCGCCAGCTGTCCTCTAAGACGACAGAGTTCACAGCGCCAACCGAAGAATCGTTGCAGACACCCTGC TCTTCTTCCGCGCCCATCGCTACCGACGTCCACGAGGCTGCGATTCCTCTTACCGAGCCCTTCAATCCTTCTACG AAGCGACCACACTCTCCTCAAGATAGCGACAGTACCCCAGTGCTTGCGCCGACGCGGCTTGTCAAAGCCCCGAAA CCTCCAAGACCCGAGCGCAGCTTCGACCCCTCCAAATACACAACGCGGTTTATTGCGCTCAAGTTCGCATATCTG GGACAGGCATACAATGGGCTCGAACATACAAACGGCAATACCACGCCTCTGCCTACCGTTGAAGAGATTATGTGG AAGGCATTGCGGCGTACAAAACTCATCTCCCCCGGCACCACCTCTGATCTTGAGCCGACCGAAAGAGGGGAGCGC GTCCCCATGCGCCCCTACCACCTTTATTGGGATGGATGCGATTACTCCAAAGCAGGTCGTACCGATAAGGGCGTG AGCGCTTTTGGGCAGGTTATTGGACTGCGGGTCCGCAGTCAACGACCCATGCCCAAGACTCCCACCGAGGGCGAG GATGCGATGCGCGTTGACTCGGGATCTACTGAAAAGGAGTGGGATGATGTAGCCGATGAGATGAACTATATCAAT GTTCTAAACAGGGTGCTTCCGGAAGACATCCGGGTCCTGGCTTGGTGTCCTAACCCGCCGCCTGGTTTCGATGCC CGCTTCTCCTGCCGTGAACGTCGGTACAAGTACTTCTTCACCAACCCCGCGTTCGCTCCCACACCCGGGCCCCTT GGGTTCCAGAACCGCGCAGAGAACGGCAATGGCCCGCGTGCTGAGTTCCGTGAGGGCTGGCTCGACATTGAGGCT ATGCGCGAGGCAGCTAAGCATTTCGAGGGTATGCATGACTTCCGGAATTTCTGCAAGTTGGACACCAACAAGCAG ATTGATAATTTCGAACGCATTATCCTTCACTCTAGTATCGAAGCCGTCAATCCCAAGGTCAACCCCGTGGGGTAT GTTGGCCAACCTGGATTCCAGGCCAAAGAGGGTTGTGTGCCCGAACCGGATTTGACGACTCCCAATACGGTTTCT CAAAGTATCCCTCAGGTCTACTCGTTTAACCTCCACGGTTCTGCCTTCTTGTGGCACCAGGTGCGCCACATGGTT GCAATTCTGTTCCTAGTCGGACAGGGATTCGAGTCCCCATCTATCGTCCCTGAACTGCTGGACATTACCAAGAAT CCACAAAAGCCAATATATGCAATGGCTGATGATGCTCCGCTGGTGCTTTGGGACTGCATTTTCCCCGATCTGAAT TCCGACAGTCGCCAGGATTCCTTGAACTGGGTCTATGCTGGTGACAATGCTGCAAACTGCAAGGGAACCGCCAAG GGTGATAGCAAATTCGGGCTGCGGGGTACCGTTGAAAGTTTGTGGGCCGTTTGGAGAAAGCGAAAGATAGATGAG ATTCTAGCGGGTGCTCTGCTAGACTTGACTGTCAGCCAGGGTGACCAGAACGTGGAAAATCTTGACAAACAGTGG CAAAAGGCGGGTTATTCCAAAAGAGGACACAGAGGTGCCAAGGTCTGGTGTGGTGGAAACGATACTGTTGTTGGC GGGAAATACATCCGTGTCGACCAGAAGGGTAAGATGGAGACCGTGGAAGTTCAAAATGCCAAGGGACTTCTCACA AAGCAGCGAAGACTAGCAAGGATGGAGGGTGCACAAGCGGCATCGGAATGA
Gene	>Pro_DTO377G3_2\|g1833.t1 ATGGAGGACACTAAAAGCAAGGGCCAACCCGACTACTCGGCCTGGAGTAATTCCAGCCTGATCGCGCGCATAACA GAGTTAGAGCGCCAGCTGTCCTCTAAGACGACAGAGTTCACAGCGCCAACCGAAGAATCGTTGCAGACACCCTGC TCTTCTTCCGCGCCCATCGCTACCGACGTCCACGAGGCTGCGATTCCTCTTACCGAGCCCTTCAATCCTTCTACG AAGCGACCACACTCTCCTCAAGATAGCGACAGTACCCCAGTGCTTGCGCCGACGCGGCTTGTCAAAGCCCCGAAA CCTCCAAGACCCGAGCGCAGCTTCGACCCCTCCAAATACACAACGCGGTTTATTGCGCTCAAGTTCGCATATCTG GGACAGGCATACAATGGGCTCGAACATACAAACGGCAATACCACGCCTCTGCCTACCGTTGAAGAGATTATGTGG AAGGCATTGCGGCGTACAAAACTCATCTCCCCCGGCACCACCTCTGATCTTGAGCCGACCGAAAGAGGGGAGCGC GTCCCCATGCGCCCCTACCACCTTTATTGGGATGGATGCGATTACTCCAAAGCAGGTCGTACCGATAAGGGCGTG AGCGCTTTTGGGCAGGTTATTGGACTGCGGGTCCGCAGTCAACGACCCATGCCCAAGACTCCCACCGAGGGCGAG GATGCGATGCGCGTTGACTCGGGATCTACTGAAAAGGAGTGGGATGATGTAGCCGATGAGATGAACTATATCAAT GTTCTAAACAGGGTGCTTCCGGAAGACATCCGGGTCCTGGCTTGGTGTCCTAACCCGCCGCCTGGTTTCGATGCC CGCTTCTCCTGCCGTGAACGTCGGTACAAGTACTTCTTCACCAACCCCGCGTTCGCTCCCACACCCGGGCCCCTT GGGTTCCAGAACCGCGCAGAGAACGGCAATGGCCCGCGTGCTGAGTTCCGTGAGGGCTGGCTCGACATTGAGGCT ATGCGCGAGGCAGCTAAGCATTTCGAGGGTATGCATGACTTCCGGAATTTCTGCAAGTTGGACACCAACAAGCAG ATTGATAATTTCGAACGCATTATCCTTCACTCTAGTATCGAAGCCGTCAATCCCAAGGTCAACCCCGTGGGGTAT GTTGGCCAACCTGGATTCCAGGCCAAAGAGGGTTGTGTGCCCGAACCGGATTTGACGACTCCCAATACGGTTTCT CAAAGTATCCCTCAGGTCTACTCGTTTAACCTCCACGGTTCTGCCTTCTTGTGGCACCAGGTGCGCCACATGGTT GCAATTCTGTTCCTAGTCGGACAGGGATTCGAGTCCCCATCTATCGTCCCTGAACTGCTGGACATTACCAAGAAT CCACAAAAGCCAATATATGCAATGGCTGATGATGCTCCGCTGGTGCTTTGGGACTGCATTTTCCCCGATCTGAAT TCCGACAGTCGCCAGGATTCCTTGAACTGGGTCTATGCTGGTGACAATGCTGCAAACTGCAAGGGAACCGCCAAG GGTGATAGCAAATTCGGGCTGCGGGGTACCGTTGAAAGTTTGTGGGCCGTTTGGAGAAAGCGAAAGATAGATGAG ATTCTAGCGGGTGCTCTGCTAGACTTGACTGTCAGCCAGGGTGACCAGAACGTGGAAAATCTTGACAAACAGTGG CAAAAGGCGGGTTATTCCAAAAGAGGACACAGAGGTGCCAAGGTCTGGTGTGGTGGAAACGATACTGTTGTTGGC GGGAAATACATCCGTGTCGACCAGAAGGGTAAGATGGAGACCGTGGAAGTTCAAAATGCCAAGGGACTTCTCACA AAGCAGCGAAGACTAGCAAGGATGGAGGGTGCACAAGCGGCATCGGAATGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences