© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1811.t1 |
| Gene name | |
| Location | scaffold_02:896178..898272 |
| Strand | - |
| Gene length (bp) | 2094 |
| Transcript length (bp) | 1887 |
| Coding sequence length (bp) | 1887 |
| Protein length (aa) | 629 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08016 | PKD_channel | Polycystin cation channel | 5.9E-05 | 265 | 462 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 231 | 253 | 22 |
| 2 | 268 | 287 | 19 |
| 3 | 294 | 316 | 22 |
| 4 | 345 | 367 | 22 |
| 5 | 374 | 396 | 22 |
| 6 | 434 | 456 | 22 |
| 7 | 490 | 512 | 22 |
| 8 | 522 | 541 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.92 | 8.23 | 23.61 |
| 5d_25C | Five days - 25 degrees Celsius | 29.13 | 16.89 | 41.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 35.76 | 21.17 | 50.34 |
| 10d_25C | Ten days - 25 degrees Celsius | 55.68 | 33.89 | 77.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.17 | 20.12 | 48.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 28.52 | 16.49 | 40.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.011062 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.015268 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.438647 | no |
| 5d_25C | 7d_15C | 0.573567 | no |
| 5d_25C | 7d_30C | 0.954338 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.897909 | no |
| 7d_25C | 7d_30C | 0.376933 | no |
| 7d_25C | 10d_25C | 0.037981 | yes |
| 7d_15C | 7d_30C | 0.498726 | no |
| 7d_15C | 10d_25C | 0.017762 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1811.t1 MGHWRNLFTADPGRTRHRIQVERRRLLPAYAADEPHASGASKELAKVALRLKYQIEQVVSCEVKDKFLTDPNSRI ITDDVVATAMKAGGDEYKACVVYCLLVCLRWFKIQASVELWDSDLHEVRAVACEVIAKRIIESEPDQDYVLKDIL LKRYSIFSEGVETDPANVIERSVDLHALKIISSAPYQRCILYLWRGWICQEEGNPTNFVEYSEKANTNYWVHFHP DRMRTPLYQNVCQILFSLVYLAVYTAVINTVNPTGDVDVAEGILYGMTVAFICDEGLKFWKVGWNYLEFWNAFNS TLYTILIVSLAMRFIALAHSTSANDEQRRLYNELSYNFLAFAGPMFWMRMMLYLDSVRFFGAMFVVLRVMMKESL IFFALLFVVMAGFFQAFVGMAQVDDDYPLHRNILQGMVNSIMQSPEFDTFQEFAFPFGIILYYVFNFIVMTVLLN ILIALYNSAYEDISGNATDEYMAIFAQKTMQFIRAPDENVFIPPFNLIEILFLIAPFEWWLSRNAYAKLNEFVMG VIYSPLLIFAAWVETSRARQIQWNRRHGEADDEYAQEWEHVATDVNFDLDDTWKEQVMESMPDIKLDNCTYELRE LKEQVRMLTGMVKELNREVMDKKADGAS* |
| Coding | >Pro_DTO377G3_2|g1811.t1 ATGGGACATTGGAGGAATCTCTTTACCGCCGATCCTGGCAGGACGCGGCATCGCATCCAGGTGGAACGTCGTCGA CTGCTACCTGCCTATGCTGCTGATGAGCCTCACGCCTCTGGTGCTTCAAAGGAACTTGCCAAGGTTGCTCTTCGG TTGAAATATCAAATTGAGCAGGTTGTCTCATGCGAAGTGAAGGATAAATTCTTGACCGACCCAAATAGCCGCATC ATCACGGACGATGTGGTTGCGACAGCCATGAAGGCTGGGGGAGATGAATACAAAGCATGCGTTGTTTATTGTCTT TTAGTTTGTCTGCGATGGTTCAAGATTCAAGCCTCCGTCGAGCTCTGGGATTCCGATCTTCACGAGGTTCGGGCA GTGGCTTGCGAGGTCATCGCCAAGCGCATAATCGAATCGGAGCCGGACCAAGATTACGTGCTGAAGGATATCTTG CTCAAGCGGTACTCCATCTTCAGTGAAGGAGTAGAGACTGATCCCGCCAATGTCATTGAACGATCGGTAGATCTC CACGCCTTGAAAATCATCAGCTCTGCCCCGTACCAGAGATGTATCCTGTACCTGTGGAGGGGTTGGATCTGTCAG GAAGAGGGCAACCCAACTAACTTTGTCGAATACAGCGAGAAGGCTAACACTAACTATTGGGTTCATTTCCATCCT GACCGGATGCGAACTCCTCTGTATCAGAATGTCTGCCAAATTTTGTTTTCCTTGGTTTACCTTGCGGTTTATACG GCGGTCATCAATACCGTGAACCCAACCGGTGACGTGGACGTGGCCGAGGGCATTCTTTACGGTATGACTGTTGCG TTCATCTGCGACGAAGGGCTCAAGTTTTGGAAGGTTGGATGGAATTACCTCGAATTCTGGAATGCCTTCAACTCA ACCCTCTACACTATCCTGATCGTGTCACTTGCCATGCGGTTTATTGCCTTGGCACACTCAACATCTGCCAACGAT GAACAAAGGCGGCTATACAACGAGCTCAGCTACAACTTCTTGGCATTTGCGGGCCCTATGTTCTGGATGCGCATG ATGCTATACCTTGACTCGGTCCGCTTCTTCGGTGCTATGTTTGTGGTCCTCCGGGTCATGATGAAGGAGAGCTTG ATATTCTTTGCTCTTCTATTTGTGGTGATGGCTGGTTTCTTCCAGGCCTTCGTCGGCATGGCCCAAGTAGATGAC GACTATCCCCTTCACCGAAACATTCTCCAAGGAATGGTGAACAGTATCATGCAGAGTCCTGAGTTCGACACTTTC CAGGAGTTTGCATTTCCCTTTGGCATCATCCTCTATTATGTTTTCAACTTCATTGTCATGACTGTTTTGTTGAAT ATTCTCATTGCCTTGTACAACAGCGCATATGAAGATATCTCGGGCAATGCCACTGACGAATACATGGCCATCTTT GCGCAGAAAACCATGCAGTTCATCCGCGCCCCAGATGAAAATGTCTTCATCCCGCCATTCAATCTCATTGAGATT CTGTTTCTAATAGCCCCATTCGAATGGTGGCTTTCGCGGAACGCATACGCAAAGCTGAATGAATTTGTAATGGGT GTGATCTATTCTCCTCTGCTTATCTTTGCGGCCTGGGTTGAGACCAGTCGGGCACGCCAGATTCAATGGAATCGA CGCCATGGCGAAGCAGACGATGAATATGCCCAGGAATGGGAGCATGTGGCCACAGATGTCAACTTTGATCTTGAT GATACTTGGAAAGAGCAGGTCATGGAGTCCATGCCGGATATCAAGCTTGATAATTGTACATATGAACTCAGGGAG CTGAAAGAACAGGTTAGAATGTTGACGGGAATGGTGAAGGAGTTGAATCGGGAGGTGATGGACAAGAAGGCGGAT GGAGCAAGCTAG |
| Transcript | >Pro_DTO377G3_2|g1811.t1 ATGGGACATTGGAGGAATCTCTTTACCGCCGATCCTGGCAGGACGCGGCATCGCATCCAGGTGGAACGTCGTCGA CTGCTACCTGCCTATGCTGCTGATGAGCCTCACGCCTCTGGTGCTTCAAAGGAACTTGCCAAGGTTGCTCTTCGG TTGAAATATCAAATTGAGCAGGTTGTCTCATGCGAAGTGAAGGATAAATTCTTGACCGACCCAAATAGCCGCATC ATCACGGACGATGTGGTTGCGACAGCCATGAAGGCTGGGGGAGATGAATACAAAGCATGCGTTGTTTATTGTCTT TTAGTTTGTCTGCGATGGTTCAAGATTCAAGCCTCCGTCGAGCTCTGGGATTCCGATCTTCACGAGGTTCGGGCA GTGGCTTGCGAGGTCATCGCCAAGCGCATAATCGAATCGGAGCCGGACCAAGATTACGTGCTGAAGGATATCTTG CTCAAGCGGTACTCCATCTTCAGTGAAGGAGTAGAGACTGATCCCGCCAATGTCATTGAACGATCGGTAGATCTC CACGCCTTGAAAATCATCAGCTCTGCCCCGTACCAGAGATGTATCCTGTACCTGTGGAGGGGTTGGATCTGTCAG GAAGAGGGCAACCCAACTAACTTTGTCGAATACAGCGAGAAGGCTAACACTAACTATTGGGTTCATTTCCATCCT GACCGGATGCGAACTCCTCTGTATCAGAATGTCTGCCAAATTTTGTTTTCCTTGGTTTACCTTGCGGTTTATACG GCGGTCATCAATACCGTGAACCCAACCGGTGACGTGGACGTGGCCGAGGGCATTCTTTACGGTATGACTGTTGCG TTCATCTGCGACGAAGGGCTCAAGTTTTGGAAGGTTGGATGGAATTACCTCGAATTCTGGAATGCCTTCAACTCA ACCCTCTACACTATCCTGATCGTGTCACTTGCCATGCGGTTTATTGCCTTGGCACACTCAACATCTGCCAACGAT GAACAAAGGCGGCTATACAACGAGCTCAGCTACAACTTCTTGGCATTTGCGGGCCCTATGTTCTGGATGCGCATG ATGCTATACCTTGACTCGGTCCGCTTCTTCGGTGCTATGTTTGTGGTCCTCCGGGTCATGATGAAGGAGAGCTTG ATATTCTTTGCTCTTCTATTTGTGGTGATGGCTGGTTTCTTCCAGGCCTTCGTCGGCATGGCCCAAGTAGATGAC GACTATCCCCTTCACCGAAACATTCTCCAAGGAATGGTGAACAGTATCATGCAGAGTCCTGAGTTCGACACTTTC CAGGAGTTTGCATTTCCCTTTGGCATCATCCTCTATTATGTTTTCAACTTCATTGTCATGACTGTTTTGTTGAAT ATTCTCATTGCCTTGTACAACAGCGCATATGAAGATATCTCGGGCAATGCCACTGACGAATACATGGCCATCTTT GCGCAGAAAACCATGCAGTTCATCCGCGCCCCAGATGAAAATGTCTTCATCCCGCCATTCAATCTCATTGAGATT CTGTTTCTAATAGCCCCATTCGAATGGTGGCTTTCGCGGAACGCATACGCAAAGCTGAATGAATTTGTAATGGGT GTGATCTATTCTCCTCTGCTTATCTTTGCGGCCTGGGTTGAGACCAGTCGGGCACGCCAGATTCAATGGAATCGA CGCCATGGCGAAGCAGACGATGAATATGCCCAGGAATGGGAGCATGTGGCCACAGATGTCAACTTTGATCTTGAT GATACTTGGAAAGAGCAGGTCATGGAGTCCATGCCGGATATCAAGCTTGATAATTGTACATATGAACTCAGGGAG CTGAAAGAACAGGTTAGAATGTTGACGGGAATGGTGAAGGAGTTGAATCGGGAGGTGATGGACAAGAAGGCGGAT GGAGCAAGCTAG |
| Gene | >Pro_DTO377G3_2|g1811.t1 ATGGGACATTGGAGGAATCTCTTTACCGCCGATCCTGGCAGGACGCGGCATCGCATCCAGGTGGAACGTCGTCGA CGTACGTCATTTCTAAACAATCGGCACCGCAATGTGCTAACAAGTCACAGTGCTACCTGCCTATGCTGCTGATGA GCCTCACGCCTCTGGTGCTTCAAAGGAACTTGCCAAGGTTGCTCTTCGGTTGAAATATCAAATTGAGCAGGTTGT CTCATGCGAAGTGAAGGATAAATTCTTGACCGACCCAAATAGCCGCATCATCACGGACGATGTGGTTGCGACAGC CATGAAGGCTGGGGGAGATGAATACAAAGCATGCGTTGTTTATTGTCTTTTAGTTTGTCTGCGATGGTTCAAGAT TCAAGCCTCCGTCGAGCTCTGGGATTCCGATCTTCACGAGGTTCGGGCAGTGGCTTGCGAGGTCATCGCCAAGCG CATGTAATATCCCTTTGATATTTTGGGGTTTCTGCTATTTACTCACTACTTTGAACAGAATCGAATCGGAGCCGG ACCAAGATTACGTGCTGAAGGATATCTTGCTCAAGCGGTACTCCATCTTCAGTGAAGGAGTAGAGACTGATCCCG CCAATGTCATTGAACGATCGGTAGATCTCCACGCCTTGAAAATCATCAGCTCTGCCCCGTACCAGAGATGTATCC TGTACCTGTGGAGGGGTTGGATCTGTCAGGAAGAGGGCAACCCAACTAACTTTGTCGAATACAGCGAGAAGGCTA ACACTAACTATTGGGTTCATTTCCATCCTGACCGGATGCGAACTCCTCTGTATCAGAATGTCTGCCAAATTTTGT TTTCCTTGGTTTACCTTGCGGTTTATACGGCGGTCATCAATACCGTGAACCCAACCGGTGACGTGGACGTGGCCG AGGGCATTCTTTACGGTATGACTGTTGCGTTCATCTGCGACGAAGGGCTCAAGTTTTGGAAGGTTGGATGGAATT ACCTCGAATTCTGGAATGCCTTCAACTCAACCCTCTACACTATCCTGATCGTGTCACTTGCCATGCGGTTTATTG CCTTGGCACACTCAACATCTGCCAACGATGAACAAAGGCGGCTATACAACGAGCTCAGCTACAACTTCTTGGCAT TTGCGGGCCCTATGTTCTGGATGCGCATGATGCTATACCTTGACTCGGTCCGCTTCTTCGGTGCTATGTTTGTGG TCCTCCGGGTCATGATGAAGGAGAGCTTGATATTCTTTGCTCTTCTATTTGTGGTGATGGCTGGTTTCTTCCAGG CCTTCGTCGGCATGGCCCAAGTAGATGACGACTATCCCCTTCACCGAAACATTCTCCAAGGAATGGTGAACAGTA TCATGCAGAGTCCTGAGTTCGACACTTTCCAGGAGTTTGCATTTCCCTTTGGCATCATCCTCTATTATGTTTTCA ACTTCATTGTCATGACTGGTAAGTTTGCGTCCAGCTTGTTTGGGCTTTTGTTGACAATTATCAGTTTTGTTGAAT ATTCTCATTGCCTTGTACAACAGCGCATATGAAGATATCTCGGGCAATGCCACTGACGAATACATGGCCATCTTT GCGCAGAAAACCATGCAGTTCATCCGCGCCCCAGATGAAAATGTCTTCATCCCGCGTACGTATTTTTTCCGCTTC GATGGCACACGTGTGGCTAACTTAATCTGGATACTAGCATTCAATCTCATTGAGATTCTGTTTCTAATAGCCCCA TTCGAATGGTGGCTTTCGCGGAACGCATACGCAAAGCTGAATGAATTTGTAATGGGTGTGATCTATTCTCCTCTG CTTATCTTTGCGGCCTGGGTTGAGACCAGTCGGGCACGCCAGATTCAATGGAATCGACGCCATGGCGAAGCAGAC GATGAATATGCCCAGGAATGGGAGCATGTGGCCACAGATGTCAACTTTGATCTTGATGATACTTGGAAAGAGCAG GTCATGGAGTCCATGCCGGATATCAAGCTTGATAATTGTACATATGAACTCAGGGAGCTGAAAGAACAGGTTAGA ATGTTGACGGGAATGGTGAAGGAGTTGAATCGGGAGGTGATGGACAAGAAGGCGGATGGAGCAAGCTAG |