© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g180.t1 |
| Gene name | |
| Location | scaffold_01:468476..470524 |
| Strand | - |
| Gene length (bp) | 2048 |
| Transcript length (bp) | 1704 |
| Coding sequence length (bp) | 1704 |
| Protein length (aa) | 568 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.8E-17 | 111 | 490 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 197 | 219 | 22 |
| 2 | 234 | 256 | 22 |
| 3 | 268 | 287 | 19 |
| 4 | 380 | 402 | 22 |
| 5 | 409 | 431 | 22 |
| 6 | 507 | 529 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.01 | 0.0 | 0.1 |
| 5d_25C | Five days - 25 degrees Celsius | 0.00 | 0.0 | 0.0 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.01 | 0.0 | 0.1 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.0 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.00 | 0.0 | 0.0 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.00 | 0.0 | 0.0 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8648 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g180.t1 MSTVYSTKKGPDESITVLKGTDTDSSTSLDIPPLGEPGDERRFWFQRGKDYNPEAIATQPSVFDNPDTAKEYQPR ADWENLHRFDTSARWTWNEEYKLIRKIDLRIMVFACLMFMCLELDRSNLSQALTDNMLPELNMTTNDYNLGNTVF KLSFLSAELPSQLVSKWVGPDRWIPTQMVLWSAVAMAQYGLNGRTTFLLCRALLGILQGGFIPDVILYLSYFYKH HELSLRLGFFWTAMNIADILAAFLAFGFLHLRGVQGQSGWRWLFLLEGLLTLLFGLSAYILMPPGPCQTANWSRG KSGWFTAREETIIVNRVIRDDPSKGTMHNREPITPKLLWKSLKDYDLWPLYIIGLTFQTPVVPPKQYLTLTLKGL GFGTFVTNLLVIPSEVLSIIFLLLLTYASEICNQLTLVSTIGQIWMLPFLVYLYVIDINTANKWCVWAVITLLLS YPNAHAIQVNWNSRNSNTVRSRTVSAAMYNMCVQSSGIIASNIYRADDAPRYRRGNGTLVGLVVSNVFIYLLTKV YYVWRNQSRDKKWNAMTDNEKTNYLATTKDEGNKRLDFRFAH* |
| Coding | >Pro_DTO377G3_2|g180.t1 ATGTCCACTGTATACAGCACAAAGAAAGGCCCGGATGAGTCTATAACAGTACTCAAAGGGACAGATACAGACTCA TCTACCAGTCTTGACATCCCGCCGTTGGGTGAGCCAGGAGATGAACGTCGGTTTTGGTTTCAGCGAGGCAAAGAC TACAACCCCGAAGCAATTGCGACTCAGCCGTCCGTTTTTGACAACCCGGACACCGCGAAGGAATATCAACCTCGA GCCGACTGGGAGAATCTTCACCGATTTGACACCTCGGCTCGGTGGACATGGAACGAGGAATACAAATTGATCCGA AAAATCGATCTCCGTATCATGGTATTTGCGTGTCTCATGTTCATGTGCTTGGAGTTGGATCGGTCGAATCTGTCA CAAGCTCTAACCGACAACATGCTTCCCGAGTTGAACATGACCACAAATGACTACAATCTTGGAAATACGGTGTTC AAGCTCTCATTCCTCAGTGCCGAGCTTCCCTCTCAGCTCGTCAGCAAATGGGTTGGACCTGATCGGTGGATTCCC ACCCAAATGGTTCTTTGGTCTGCAGTTGCCATGGCACAGTATGGTCTGAATGGGAGAACGACTTTCCTCTTGTGC CGCGCCCTGCTGGGTATTTTGCAAGGCGGGTTTATCCCAGATGTGATATTGTATCTGTCCTACTTTTATAAACAC CATGAGCTGTCTTTACGACTCGGTTTCTTTTGGACGGCCATGAATATTGCGGATATTCTTGCTGCATTCCTCGCA TTCGGATTTTTACATCTTCGTGGTGTGCAAGGTCAATCGGGATGGCGCTGGCTGTTTTTGCTGGAGGGCCTTCTG ACACTTCTATTTGGTCTATCTGCATATATCCTGATGCCACCAGGACCATGCCAGACTGCTAATTGGTCTCGGGGT AAATCGGGTTGGTTCACTGCCCGAGAGGAAACCATCATCGTCAATCGAGTAATTCGTGATGACCCAAGCAAAGGA ACCATGCACAATCGAGAACCTATTACACCTAAACTACTCTGGAAAAGTCTCAAGGACTATGATCTCTGGCCGTTA TACATCATCGGACTTACCTTCCAAACACCAGTGGTGCCCCCCAAGCAATACCTAACTCTGACTCTGAAAGGCCTC GGATTCGGCACTTTCGTGACAAATCTCTTGGTCATTCCTAGCGAAGTGCTGTCTATTATCTTCCTCCTACTCCTC ACATATGCATCGGAGATTTGTAACCAATTGACTTTGGTGTCTACGATCGGGCAAATATGGATGCTTCCTTTCTTG GTCTATTTATATGTGATCGACATCAACACCGCGAACAAGTGGTGCGTGTGGGCGGTGATAACTCTGCTATTGTCA TATCCAAATGCGCATGCTATTCAAGTCAACTGGAACTCCCGCAACTCAAACACTGTCCGATCCCGCACGGTCTCG GCTGCCATGTATAACATGTGTGTCCAATCGTCGGGGATTATTGCTTCCAATATCTATCGCGCTGATGATGCTCCC CGCTACCGGAGAGGCAATGGTACTCTGGTGGGACTCGTTGTTTCCAACGTGTTCATATACTTGTTGACCAAGGTA TACTATGTCTGGCGCAATCAAAGCCGGGACAAGAAATGGAACGCTATGACGGACAACGAAAAGACGAACTATTTG GCGACTACTAAGGACGAAGGAAATAAGCGACTGGATTTCCGATTCGCCCATTGA |
| Transcript | >Pro_DTO377G3_2|g180.t1 ATGTCCACTGTATACAGCACAAAGAAAGGCCCGGATGAGTCTATAACAGTACTCAAAGGGACAGATACAGACTCA TCTACCAGTCTTGACATCCCGCCGTTGGGTGAGCCAGGAGATGAACGTCGGTTTTGGTTTCAGCGAGGCAAAGAC TACAACCCCGAAGCAATTGCGACTCAGCCGTCCGTTTTTGACAACCCGGACACCGCGAAGGAATATCAACCTCGA GCCGACTGGGAGAATCTTCACCGATTTGACACCTCGGCTCGGTGGACATGGAACGAGGAATACAAATTGATCCGA AAAATCGATCTCCGTATCATGGTATTTGCGTGTCTCATGTTCATGTGCTTGGAGTTGGATCGGTCGAATCTGTCA CAAGCTCTAACCGACAACATGCTTCCCGAGTTGAACATGACCACAAATGACTACAATCTTGGAAATACGGTGTTC AAGCTCTCATTCCTCAGTGCCGAGCTTCCCTCTCAGCTCGTCAGCAAATGGGTTGGACCTGATCGGTGGATTCCC ACCCAAATGGTTCTTTGGTCTGCAGTTGCCATGGCACAGTATGGTCTGAATGGGAGAACGACTTTCCTCTTGTGC CGCGCCCTGCTGGGTATTTTGCAAGGCGGGTTTATCCCAGATGTGATATTGTATCTGTCCTACTTTTATAAACAC CATGAGCTGTCTTTACGACTCGGTTTCTTTTGGACGGCCATGAATATTGCGGATATTCTTGCTGCATTCCTCGCA TTCGGATTTTTACATCTTCGTGGTGTGCAAGGTCAATCGGGATGGCGCTGGCTGTTTTTGCTGGAGGGCCTTCTG ACACTTCTATTTGGTCTATCTGCATATATCCTGATGCCACCAGGACCATGCCAGACTGCTAATTGGTCTCGGGGT AAATCGGGTTGGTTCACTGCCCGAGAGGAAACCATCATCGTCAATCGAGTAATTCGTGATGACCCAAGCAAAGGA ACCATGCACAATCGAGAACCTATTACACCTAAACTACTCTGGAAAAGTCTCAAGGACTATGATCTCTGGCCGTTA TACATCATCGGACTTACCTTCCAAACACCAGTGGTGCCCCCCAAGCAATACCTAACTCTGACTCTGAAAGGCCTC GGATTCGGCACTTTCGTGACAAATCTCTTGGTCATTCCTAGCGAAGTGCTGTCTATTATCTTCCTCCTACTCCTC ACATATGCATCGGAGATTTGTAACCAATTGACTTTGGTGTCTACGATCGGGCAAATATGGATGCTTCCTTTCTTG GTCTATTTATATGTGATCGACATCAACACCGCGAACAAGTGGTGCGTGTGGGCGGTGATAACTCTGCTATTGTCA TATCCAAATGCGCATGCTATTCAAGTCAACTGGAACTCCCGCAACTCAAACACTGTCCGATCCCGCACGGTCTCG GCTGCCATGTATAACATGTGTGTCCAATCGTCGGGGATTATTGCTTCCAATATCTATCGCGCTGATGATGCTCCC CGCTACCGGAGAGGCAATGGTACTCTGGTGGGACTCGTTGTTTCCAACGTGTTCATATACTTGTTGACCAAGGTA TACTATGTCTGGCGCAATCAAAGCCGGGACAAGAAATGGAACGCTATGACGGACAACGAAAAGACGAACTATTTG GCGACTACTAAGGACGAAGGAAATAAGCGACTGGATTTCCGATTCGCCCATTGA |
| Gene | >Pro_DTO377G3_2|g180.t1 ATGTCCACTGTATACAGCACAAAGAAAGGCCCGGATGAGTCTATAACAGTACTCAAAGGGACAGATACAGACTCA TCTACCAGTCTTGACATCCCGCCGTTGGGTGAGCCAGGAGATGAACGTCGGTTTTGGTTTCAGCGAGGCAAAGAC TACAACCCCGAAGCAATTGCGACTCAGCCGTCCGTTTTTGACAACCCGGACACCGCGAAGGAATATCAACCTCGA GCCGACTGGGAGAATCTTCACCGATTTGACACCTCGGCTCGGTGGACATGGAACGAGGAATACAAATTGATCCGA AAAATCGATCTCCGTATCATGGTATTTGCGTGTCTCATGTTCATGTGCTTGGAGTTGGATCGGTCGAATCTGTCA CAAGCTCTAACCGACAACATGCTTCCCGAGTTGAACATGACCACAAATGGTAAATAAAGCATCGGAGTTATCTTT TTATCTTATGATATTCTAGGGCTGACAATAATAATTTCTATCTCCAGACTACAATCTTGGAAATACGGTGTTCAA GCTCTCATTCCTCAGTGCCGAGCTTCCCTCTCAGCTCGTCAGCAAATGGGTTGGACCTGATCGGTGGATTCCCAC CCAAATGGTTCTTTGGTCTGCAGTTGCCATGGCACAGTATGGTCTGAATGGGAGAACGACTTTCCTCTTGTGCCG CGCCCTGCTGGGTATTTTGCAAGGCGGGTTTATCCCAGATGTAGGTTATTCGTGTTCTGGTTACGGGTCACTGCT AACAGACTCAAAGGTGATATTGTATCTGTCCTACTTTTATAAACACCATGAGCTGTCTTTACGACTCGGTTTCTT TTGGACGGCCATGAATATTGCGGATATTCTTGCTGCATTCCTCGCATTCGGATTTTTACATCTTCGTGGTGTGCA AGGTCAATCGGGATGGCGCTGGCTGTTTTTGCTGGAGGTGAGTAGCCACCTCATTTAAATTTGATTGCAATCGGC GCATTACTCACATCGAAGACAGGGCCTTCTGACACTTCTATTTGGTCTATCTGCATATATCCTGATGCCACCAGG ACCATGCCAGACTGCTAATTGGTCTCGGGGTAAATCGGGTTGGTTCACTGCCCGGTAAGTTATCTCCCTTCTTAT AGCAAACCGGATCGTTATTGACAGGATTGACAGAGAGGAAACCATCATCGTCAATCGAGTAATTCGTGATGACCC AAGCAAAGGAACCATGCACAATCGAGAACCTATTACACCTAAACTACTCTGGAAAAGTCTCAAGGACTATGATCT CTGGCCGTTATACATCATCGGACTTACCTTCCAAACACCAGTGGTGCCCCCCAAGCAATACCTAACTCTGACTCT GAAAGGCCTCGGATTCGGCACTTTCGTGACAAATCTCTTGGTCATTCCTAGCGAAGTGCTGTCTATTATCTTCCT CCTACTCCTCACATATGCATCGGAGATTTGTAACCAATTGACTTTGGTGTCTACGATCGGGCAAATATGGATGCT TCCTTTCTTGGTCTATTTATATGTGATCGACATCAACACCGCGAACAAGTGGTGCGTGTGGGCGGTGATAACTCT GCTATTGTCATATCCAAATGGTAAGCTCACCTGTTCAAATCTGCTTGAAATCATGGCTCACAAAATCACAGCGCA TGCTATTCAAGTCAACTGGAACTCCCGCAACTCAAACACTGTCCGATCCCGCACGGTCTCGGCTGCCATGTATAA CATGTGTGTCCAATCGTCGGGGATTATTGCTTCCAATATCTATCGCGCTGGTAGGTCATGAAATTCCTCATCTTT TCTACATTTGCTCGGTATTCTAATTTGGATCAGATGATGCTCCCCGCTACCGGAGAGGCAATGGTACTCTGGTGG GACTCGTTGTTTCCAACGTGTTCATATACTTGTTGACCAAGGTATACTATGTCTGGCGCAATCAAAGCCGGGACA AGAAATGGAACGCTATGACGGACAACGAAAAGACGAACTATTTGGCGACTACTAAGGACGAAGGAAATAAGCGAC TGGATTTCCGATTCGCCCATTGA |