© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1787.t1 |
| Gene name | |
| Location | scaffold_02:832443..834030 |
| Strand | - |
| Gene length (bp) | 1587 |
| Transcript length (bp) | 1392 |
| Coding sequence length (bp) | 1392 |
| Protein length (aa) | 464 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 2.7E-14 | 401 | 433 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0065007 | biological regulation | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0050789 | regulation of biological process | No |
| GO:0005488 | binding | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0003674 | molecular_function | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 51.04 | 30.18 | 71.90 |
| 5d_25C | Five days - 25 degrees Celsius | 33.33 | 18.40 | 48.27 |
| 7d_25C | Seven days - 25 degrees Celsius | 38.44 | 21.51 | 55.37 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.46 | 13.29 | 37.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.82 | 11.55 | 34.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.87 | 12.93 | 36.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.072335 | no |
| 3d_25C | 7d_25C | 0.260457 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.001804 | yes |
| 3d_25C | 10d_25C | 0.001804 | yes |
| 5d_25C | 7d_25C | 0.654885 | no |
| 5d_25C | 7d_15C | 0.150713 | no |
| 5d_25C | 7d_30C | 0.294088 | no |
| 5d_25C | 10d_25C | 0.340024 | no |
| 7d_25C | 7d_15C | 0.033697 | yes |
| 7d_25C | 7d_30C | 0.080608 | no |
| 7d_25C | 10d_25C | 0.098891 | no |
| 7d_15C | 7d_30C | 0.819264 | no |
| 7d_15C | 10d_25C | 0.764679 | no |
| 7d_30C | 10d_25C | 0.956516 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1787.t1 MGSLEAASRHRDPLPAMSFLGKDGSGYTSRHPSSATASPTLMSPNVMYGQSLPYAYANAPPGYISSPEARRALED EKEKRTSRQSLPSIHEALGNDPLPYPAATSAPPPQSSHPTPPPHLIGRPSAEGPAGPPNPFSNGPPTGSLMREPA YHQQLQDASRSSLASINTQDSRTSLNSLSTGKSPTQSAKTGITSVGSQNSSGYEYSAPTSAGSVASPNGYGHFPP NYSFQPQSGHSYPPAPAPYDNRAYMGAPRVEEVKGGFVSRLAPHNESKRHLDVYDVETSLNELADLSTRTLDFSR HYASRAHQTQRSGPLLGSLPSLNEVEDMLHMQRRNQDALIRIRTAVVNQEQALAEQMAQRKAFKTEDDHMAMYQE DFKGTGGFAGADPKKRRGKAAPPGRCHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRKMGAHKAASLGSNLK PKSVLDSSSPTSH* |
| Coding | >Pro_DTO377G3_2|g1787.t1 ATGGGGTCTTTGGAAGCCGCATCTAGGCACAGAGACCCTTTGCCGGCGATGAGTTTCCTAGGGAAAGACGGATCG GGATACACCTCCAGACACCCTTCGAGCGCCACCGCTTCTCCGACTCTGATGAGTCCCAACGTCATGTACGGCCAA TCCCTGCCGTACGCCTACGCGAACGCACCGCCGGGGTACATCTCGTCGCCCGAGGCCCGTCGCGCCCTCGAAGAC GAGAAGGAAAAACGCACCTCAAGACAGTCCCTCCCATCCATCCACGAGGCCCTCGGCAACGACCCTCTCCCATAC CCAGCAGCAACCTCCGCCCCGCCACCACAATCCTCGCACCCTACGCCGCCGCCACATCTCATCGGACGACCGAGC GCAGAGGGACCAGCGGGCCCGCCCAATCCGTTTTCGAATGGCCCGCCGACGGGTTCTCTCATGCGGGAACCCGCG TACCATCAGCAGCTGCAGGATGCATCGCGCTCCAGTCTCGCCTCCATCAACACACAGGATTCGCGCACCTCACTT AACTCCCTCAGCACGGGAAAATCCCCGACCCAGAGCGCCAAAACGGGAATCACCTCGGTGGGGTCGCAAAATTCG TCCGGGTATGAGTACAGTGCGCCAACCTCCGCCGGTAGCGTGGCGTCGCCGAATGGGTACGGCCATTTCCCTCCG AACTACTCTTTTCAACCGCAGTCCGGCCACTCGTATCCTCCGGCGCCGGCTCCGTACGATAACCGGGCCTACATG GGTGCGCCACGGGTGGAAGAGGTCAAGGGTGGATTTGTGAGTCGACTAGCTCCGCACAACGAGTCTAAGCGGCAT TTGGACGTCTATGATGTGGAGACATCTTTGAATGAGCTCGCCGACTTGAGTACGCGCACCCTCGACTTTTCACGG CACTACGCGTCTCGCGCACATCAAACGCAGCGTTCCGGCCCGCTGTTAGGCTCCCTCCCTTCGCTCAACGAAGTG GAGGACATGCTTCACATGCAACGGCGGAACCAGGATGCCCTGATTCGGATACGCACCGCCGTGGTGAACCAGGAG CAAGCACTGGCTGAACAGATGGCGCAGCGCAAGGCGTTCAAGACCGAAGACGACCATATGGCGATGTACCAGGAA GACTTCAAAGGCACGGGCGGTTTCGCAGGCGCAGACCCAAAGAAACGGCGCGGAAAAGCCGCGCCTCCTGGTCGT TGCCACAGCTGCAACCGAGCCGAAACGCCAGAATGGCGTCGCGGCCCAGATGGTGCCCGGACGTTGTGTAACGCA TGCGGCCTACATTACGCCAAATTGACTCGCAAGATGGGCGCTCACAAAGCGGCGAGCCTGGGTTCGAATCTCAAG CCCAAGTCGGTTCTCGACTCCTCCTCGCCAACCAGTCATTAG |
| Transcript | >Pro_DTO377G3_2|g1787.t1 ATGGGGTCTTTGGAAGCCGCATCTAGGCACAGAGACCCTTTGCCGGCGATGAGTTTCCTAGGGAAAGACGGATCG GGATACACCTCCAGACACCCTTCGAGCGCCACCGCTTCTCCGACTCTGATGAGTCCCAACGTCATGTACGGCCAA TCCCTGCCGTACGCCTACGCGAACGCACCGCCGGGGTACATCTCGTCGCCCGAGGCCCGTCGCGCCCTCGAAGAC GAGAAGGAAAAACGCACCTCAAGACAGTCCCTCCCATCCATCCACGAGGCCCTCGGCAACGACCCTCTCCCATAC CCAGCAGCAACCTCCGCCCCGCCACCACAATCCTCGCACCCTACGCCGCCGCCACATCTCATCGGACGACCGAGC GCAGAGGGACCAGCGGGCCCGCCCAATCCGTTTTCGAATGGCCCGCCGACGGGTTCTCTCATGCGGGAACCCGCG TACCATCAGCAGCTGCAGGATGCATCGCGCTCCAGTCTCGCCTCCATCAACACACAGGATTCGCGCACCTCACTT AACTCCCTCAGCACGGGAAAATCCCCGACCCAGAGCGCCAAAACGGGAATCACCTCGGTGGGGTCGCAAAATTCG TCCGGGTATGAGTACAGTGCGCCAACCTCCGCCGGTAGCGTGGCGTCGCCGAATGGGTACGGCCATTTCCCTCCG AACTACTCTTTTCAACCGCAGTCCGGCCACTCGTATCCTCCGGCGCCGGCTCCGTACGATAACCGGGCCTACATG GGTGCGCCACGGGTGGAAGAGGTCAAGGGTGGATTTGTGAGTCGACTAGCTCCGCACAACGAGTCTAAGCGGCAT TTGGACGTCTATGATGTGGAGACATCTTTGAATGAGCTCGCCGACTTGAGTACGCGCACCCTCGACTTTTCACGG CACTACGCGTCTCGCGCACATCAAACGCAGCGTTCCGGCCCGCTGTTAGGCTCCCTCCCTTCGCTCAACGAAGTG GAGGACATGCTTCACATGCAACGGCGGAACCAGGATGCCCTGATTCGGATACGCACCGCCGTGGTGAACCAGGAG CAAGCACTGGCTGAACAGATGGCGCAGCGCAAGGCGTTCAAGACCGAAGACGACCATATGGCGATGTACCAGGAA GACTTCAAAGGCACGGGCGGTTTCGCAGGCGCAGACCCAAAGAAACGGCGCGGAAAAGCCGCGCCTCCTGGTCGT TGCCACAGCTGCAACCGAGCCGAAACGCCAGAATGGCGTCGCGGCCCAGATGGTGCCCGGACGTTGTGTAACGCA TGCGGCCTACATTACGCCAAATTGACTCGCAAGATGGGCGCTCACAAAGCGGCGAGCCTGGGTTCGAATCTCAAG CCCAAGTCGGTTCTCGACTCCTCCTCGCCAACCAGTCATTAG |
| Gene | >Pro_DTO377G3_2|g1787.t1 ATGGGGTCTTTGGAAGCCGCATCTAGGCACAGGTTGGTCTTGCGACCTCGCAGTCGGTCTCCCATTGCTCACCTT CGTCACAGAGACCCTTTGCCGGCGATGAGTTTCCTAGGGAAAGACGGATCGGGATACACCTCCAGACACCCTTCG AGCGCCACCGCTTCTCCGACTCTGATGAGTCCCAACGTCATGTACGGCCAATCCCTGCCGTACGCCTACGCGAAC GCACCGCCGGGGTACATCTCGTCGCCCGAGGCCCGTCGCGCCCTCGAAGACGAGAAGGAAAAACGCACCTCAAGA CAGTCCCTCCCATCCATCCACGAGGCCCTCGGCAACGACCCTCTCCCATACCCAGCAGCAACCTCCGCCCCGCCA CCACAATCCTCGCACCCTACGCCGCCGCCACATCTCATCGGACGACCGAGCGCAGAGGGACCAGCGGGCCCGCCC AATCCGTTTTCGAATGGCCCGCCGACGGGTTCTCTCATGCGGGAACCCGCGTACCATCAGCAGCTGCAGGATGCA TCGCGCTCCAGTCTCGCCTCCATCAACACACAGGATTCGCGCACCTCACTTAACTCCCTCAGCACGGGAAAATCC CCGACCCAGAGCGCCAAAACGGGAATCACCTCGGTGGGGTCGCAAAATTCGTCCGGGTATGAGTACAGTGCGCCA ACCTCCGCCGGTAGCGTGGCGTCGCCGAATGGGTACGGCCATTTCCCTCCGAACTACTCTTTTCAACCGCAGTCC GGCCACTCGTATCCTCCGGCGCCGGCTCCGTACGATAACCGGGCCTACATGGGTGCGCCACGGGTGGAAGAGGTC AAGGGTGGATTTGTGAGTCGACTAGCTCCGCACAACGAGTCTAAGCGGCATTTGGACGTCTATGATGTGGAGACA TCTTTGAATGAGGTATGGATTCGCCCTTGAGTCTTATTTTGAACCGATGGACAAAATCAAGAATGACTTGTTAAA TGAATTACCTACTGACTGAAATAGCTCGCCGACTTGAGTACGCGCACCCTCGACTTTTCACGGCACTACGCGTCT CGCGCACATCAAACGCAGCGTTCCGGCCCGCTGTTAGGCTCCCTCCCTTCGCTCAACGAAGTGGAGGACATGCTT CACATGCAACGGCGGAACCAGGATGCCCTGATTCGGATACGCACCGCCGTGGTGAACCAGGAGCAAGCACTGGCT GAACAGATGGCGCAGCGCAAGGCGTTCAAGACCGAAGACGACCATATGGCGATGTACCAGGAAGACTTCAAAGGC ACGGGCGGTTTCGCAGGCGCAGACCCAAAGAAACGGCGCGGAGTAAGTCTAGACTTTCCCCTGTATTGACATCTT GACACTTTTCTAACCCGTTTGCAGAAAGCCGCGCCTCCTGGTCGTTGCCACAGCTGCAACCGAGCCGAAACGCCA GAATGGCGTCGCGGCCCAGATGGTGCCCGGACGTTGTGTAACGCATGCGGCCTACATTACGCCAAATTGACTCGC AAGATGGGCGCTCACAAAGCGGCGAGCCTGGGTTCGAATCTCAAGCCCAAGTCGGTTCTCGACTCCTCCTCGCCA ACCAGTCATTAG |