© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1780.t1 |
| Gene name | |
| Location | scaffold_02:806322..808935 |
| Strand | - |
| Gene length (bp) | 2613 |
| Transcript length (bp) | 2613 |
| Coding sequence length (bp) | 2613 |
| Protein length (aa) | 871 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06738 | ThrE | Putative threonine/serine exporter | 2.1E-68 | 422 | 666 |
| PF06738 | ThrE | Putative threonine/serine exporter | 3.4E-06 | 694 | 778 |
| PF12821 | ThrE_2 | Threonine/Serine exporter, ThrE | 3.4E-10 | 695 | 791 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 526 | 548 | 22 |
| 2 | 555 | 572 | 17 |
| 3 | 612 | 634 | 22 |
| 4 | 647 | 669 | 22 |
| 5 | 689 | 707 | 18 |
| 6 | 735 | 757 | 22 |
| 7 | 767 | 789 | 22 |
| 8 | 835 | 857 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 27.38 | 15.93 | 38.84 |
| 5d_25C | Five days - 25 degrees Celsius | 23.73 | 13.72 | 33.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.04 | 12.46 | 31.61 |
| 10d_25C | Ten days - 25 degrees Celsius | 15.93 | 8.44 | 23.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 21.81 | 11.16 | 32.45 |
| 7d_30C | Seven days - 30 degrees Celsius | 22.39 | 12.63 | 32.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.620247 | no |
| 3d_25C | 7d_25C | 0.427419 | no |
| 3d_25C | 7d_15C | 0.416346 | no |
| 3d_25C | 7d_30C | 0.462978 | no |
| 3d_25C | 10d_25C | 0.023673 | yes |
| 5d_25C | 7d_25C | 0.825273 | no |
| 5d_25C | 7d_15C | 0.804623 | no |
| 5d_25C | 7d_30C | 0.866317 | no |
| 5d_25C | 10d_25C | 0.101296 | no |
| 7d_25C | 7d_15C | 0.980258 | no |
| 7d_25C | 7d_30C | 0.966362 | no |
| 7d_25C | 10d_25C | 0.227225 | no |
| 7d_15C | 7d_30C | 0.946792 | no |
| 7d_15C | 10d_25C | 0.266511 | no |
| 7d_30C | 10d_25C | 0.195822 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1780.t1 MAGGYFDLPISRSASEEGSSSLSRSRSFTSSLLIDSFQGQPVSQVRSFSDASAQDKYRNAGILKNTNRVKLTDSE SDLREQPTGPMVEFRLDQRGTELPQRPLPTANIPGFQEKVSSSSPLAPQVEDDHFSASAGVTGLTISTRTSSPGT SAEYELGQGTNDKGRAICFAHERAHRLTSLLNCPHNCPKQSPQCSLVSEIGSTPTEVVCQTADEDKFPVISFPEK QQLFDNLIDEHEAEFLDGRSTPCNSGAHYLVHQMSPRDLNFLTRLRPQSPGLHSSDQDTVSEDRNSYESAERTTS YHGGILSSLLKLYEKPRYNHNQGRGRYGRSRQGSSSEFSGRGLSPDSVWKPQRKWYDKSTARSSISMAGSSRRSG SPFAMLTRSRSSGAAVPNLSRSRPKAQLEDEIHITVHIAELLSRQRYLIQLCRALMKYGAPTHRLEEYMRMTARV IQIDGQFLYIPGCMIISFDDASTHTTEVKVVRSSQGIDLGKLADVHEIYKEVIHDVIGVEEAIQRLDEVMKKQSK FHIMFLIFAHGCASASVGPFAFNARPVDIPVAFLLGCLLGVLQLILSTKSSLYSNVFEISAAVLTSFLARAFGSI RFNGEPLFCFSALAQSAIALILPGYTVLCASLELQSRSIVAGSVRMVYAIIYSLFLGFGITIGTAVYGLLDSQAS TAYTCPASPIHNEYLQRFPFVILFTVCLAIVNRAKWKQMPIMIVISLAGYVTNYFSAKRFYSNTQVSNALGAFVI GVMGNFYSRLQHGLAAAAMLPAIFVLVPSGLAASGSLISGITSAEEMTRSPYAVVNNGTQGFVDAAKKLSADEAR SQSYGVVFDIGYGMVQVAIGTTVGLFLAALVVYPLGKKRSGLFSF* |
| Coding | >Pro_DTO377G3_2|g1780.t1 ATGGCGGGAGGTTATTTTGACCTTCCGATCTCCCGCAGCGCCTCTGAGGAAGGATCGTCCAGTCTATCAAGGTCG CGTTCCTTTACATCATCACTGCTCATTGATAGCTTCCAAGGCCAGCCAGTGTCTCAGGTGCGGAGCTTCAGTGAC GCTAGCGCACAGGACAAGTATCGGAATGCCGGCATTCTGAAAAACACAAATCGCGTCAAGCTTACGGACAGCGAA TCCGATTTGAGAGAACAACCCACTGGGCCTATGGTCGAATTCCGACTGGATCAAAGGGGCACCGAGCTGCCGCAA AGACCATTACCCACTGCCAACATTCCGGGCTTTCAGGAGAAAGTATCCTCAAGCTCCCCACTGGCACCACAGGTG GAAGACGATCATTTTAGCGCGTCAGCGGGTGTTACCGGTTTGACGATCAGCACCAGGACTAGCTCACCAGGAACT TCAGCAGAGTATGAGCTTGGTCAGGGTACGAACGACAAGGGGCGGGCCATCTGCTTTGCACATGAAAGGGCCCAC AGGCTCACATCCCTTCTCAATTGCCCGCATAATTGTCCGAAGCAAAGCCCCCAGTGCAGTCTAGTGTCTGAGATT GGATCCACCCCCACCGAAGTGGTGTGCCAGACTGCAGATGAAGATAAATTTCCTGTGATAAGCTTCCCCGAGAAA CAACAACTCTTCGACAACCTAATAGATGAACATGAAGCGGAATTCTTAGACGGGCGATCAACACCGTGCAACTCC GGAGCACATTATCTAGTGCATCAAATGTCACCTCGAGACCTGAACTTTCTGACTCGCCTTCGCCCTCAGTCTCCC GGGTTGCACTCCAGTGACCAAGACACCGTCAGCGAGGACAGGAACTCATACGAGTCTGCTGAACGGACGACAAGT TATCACGGAGGAATTCTCTCATCGCTGCTCAAGCTCTACGAGAAGCCTCGTTATAACCACAACCAAGGTCGAGGA CGGTATGGGCGGTCTCGACAGGGGAGCTCTTCCGAGTTCAGTGGACGTGGCCTGTCTCCAGACTCCGTTTGGAAA CCGCAAAGGAAGTGGTACGATAAATCAACCGCTCGTTCTAGCATTTCCATGGCCGGCTCCTCCCGCCGCTCTGGC TCCCCCTTTGCCATGCTCACGCGGTCCCGCAGCAGTGGTGCGGCCGTTCCAAACCTAAGCCGCTCACGTCCCAAG GCTCAGCTTGAGGATGAAATTCATATCACTGTTCATATTGCCGAGCTTCTGTCTCGACAACGGTACTTGATCCAG CTTTGTCGCGCTTTGATGAAGTATGGAGCTCCAACTCATCGATTGGAGGAATATATGCGCATGACAGCTCGCGTC ATCCAAATAGATGGCCAGTTTTTGTACATACCCGGCTGCATGATCATCTCCTTTGACGACGCCTCCACACACACA ACAGAGGTCAAAGTCGTCCGATCCAGTCAAGGCATTGACCTGGGTAAGCTGGCTGATGTGCATGAGATTTATAAG GAAGTGATTCACGATGTTATTGGGGTTGAAGAGGCAATACAGCGGCTCGATGAGGTCATGAAGAAGCAGAGCAAA TTCCACATTATGTTCCTCATCTTCGCCCACGGCTGTGCTAGCGCATCAGTCGGGCCCTTTGCCTTCAACGCCCGA CCGGTGGATATCCCCGTGGCGTTTCTACTGGGATGTCTCCTCGGCGTGTTACAATTGATCCTGTCAACCAAATCG AGCCTATATTCGAACGTGTTTGAGATCTCCGCCGCAGTCCTGACGTCTTTCCTTGCCCGTGCCTTTGGAAGCATC AGGTTCAATGGGGAACCTCTGTTCTGCTTTTCTGCCCTCGCACAGTCGGCCATCGCCCTCATCCTGCCAGGATAC ACTGTATTATGTGCTAGTCTGGAGCTCCAGTCACGCAGTATCGTTGCAGGTTCTGTTCGCATGGTCTATGCTATC ATATACTCGCTGTTCCTCGGATTTGGAATTACCATCGGCACTGCCGTTTACGGGCTCCTCGACTCTCAAGCTTCA ACGGCGTATACATGTCCCGCCAGCCCCATCCACAACGAGTACCTGCAACGGTTTCCGTTCGTCATCCTATTCACT GTGTGCCTGGCGATCGTCAACCGCGCCAAGTGGAAGCAAATGCCGATTATGATAGTGATCTCCCTGGCTGGCTAC GTGACCAACTACTTCAGCGCCAAGCGCTTCTATTCCAACACCCAGGTGTCCAATGCCCTGGGCGCCTTTGTCATT GGTGTGATGGGCAATTTCTACAGCCGCTTACAGCATGGGCTCGCCGCTGCGGCAATGCTGCCGGCAATCTTTGTC CTCGTTCCCTCCGGTCTTGCCGCTAGTGGGTCTCTGATATCTGGTATTACTTCTGCTGAGGAAATGACCCGGTCT CCATATGCGGTTGTGAACAATGGGACACAAGGATTTGTCGACGCGGCAAAGAAGCTATCAGCCGACGAGGCGAGA AGCCAAAGCTACGGGGTTGTTTTCGATATCGGATATGGCATGGTTCAAGTTGCTATTGGAACGACAGTTGGTCTC TTCCTAGCCGCTTTGGTGGTTTATCCGCTAGGCAAGAAGCGAAGCGGATTGTTCAGTTTCTAG |
| Transcript | >Pro_DTO377G3_2|g1780.t1 ATGGCGGGAGGTTATTTTGACCTTCCGATCTCCCGCAGCGCCTCTGAGGAAGGATCGTCCAGTCTATCAAGGTCG CGTTCCTTTACATCATCACTGCTCATTGATAGCTTCCAAGGCCAGCCAGTGTCTCAGGTGCGGAGCTTCAGTGAC GCTAGCGCACAGGACAAGTATCGGAATGCCGGCATTCTGAAAAACACAAATCGCGTCAAGCTTACGGACAGCGAA TCCGATTTGAGAGAACAACCCACTGGGCCTATGGTCGAATTCCGACTGGATCAAAGGGGCACCGAGCTGCCGCAA AGACCATTACCCACTGCCAACATTCCGGGCTTTCAGGAGAAAGTATCCTCAAGCTCCCCACTGGCACCACAGGTG GAAGACGATCATTTTAGCGCGTCAGCGGGTGTTACCGGTTTGACGATCAGCACCAGGACTAGCTCACCAGGAACT TCAGCAGAGTATGAGCTTGGTCAGGGTACGAACGACAAGGGGCGGGCCATCTGCTTTGCACATGAAAGGGCCCAC AGGCTCACATCCCTTCTCAATTGCCCGCATAATTGTCCGAAGCAAAGCCCCCAGTGCAGTCTAGTGTCTGAGATT GGATCCACCCCCACCGAAGTGGTGTGCCAGACTGCAGATGAAGATAAATTTCCTGTGATAAGCTTCCCCGAGAAA CAACAACTCTTCGACAACCTAATAGATGAACATGAAGCGGAATTCTTAGACGGGCGATCAACACCGTGCAACTCC GGAGCACATTATCTAGTGCATCAAATGTCACCTCGAGACCTGAACTTTCTGACTCGCCTTCGCCCTCAGTCTCCC GGGTTGCACTCCAGTGACCAAGACACCGTCAGCGAGGACAGGAACTCATACGAGTCTGCTGAACGGACGACAAGT TATCACGGAGGAATTCTCTCATCGCTGCTCAAGCTCTACGAGAAGCCTCGTTATAACCACAACCAAGGTCGAGGA CGGTATGGGCGGTCTCGACAGGGGAGCTCTTCCGAGTTCAGTGGACGTGGCCTGTCTCCAGACTCCGTTTGGAAA CCGCAAAGGAAGTGGTACGATAAATCAACCGCTCGTTCTAGCATTTCCATGGCCGGCTCCTCCCGCCGCTCTGGC TCCCCCTTTGCCATGCTCACGCGGTCCCGCAGCAGTGGTGCGGCCGTTCCAAACCTAAGCCGCTCACGTCCCAAG GCTCAGCTTGAGGATGAAATTCATATCACTGTTCATATTGCCGAGCTTCTGTCTCGACAACGGTACTTGATCCAG CTTTGTCGCGCTTTGATGAAGTATGGAGCTCCAACTCATCGATTGGAGGAATATATGCGCATGACAGCTCGCGTC ATCCAAATAGATGGCCAGTTTTTGTACATACCCGGCTGCATGATCATCTCCTTTGACGACGCCTCCACACACACA ACAGAGGTCAAAGTCGTCCGATCCAGTCAAGGCATTGACCTGGGTAAGCTGGCTGATGTGCATGAGATTTATAAG GAAGTGATTCACGATGTTATTGGGGTTGAAGAGGCAATACAGCGGCTCGATGAGGTCATGAAGAAGCAGAGCAAA TTCCACATTATGTTCCTCATCTTCGCCCACGGCTGTGCTAGCGCATCAGTCGGGCCCTTTGCCTTCAACGCCCGA CCGGTGGATATCCCCGTGGCGTTTCTACTGGGATGTCTCCTCGGCGTGTTACAATTGATCCTGTCAACCAAATCG AGCCTATATTCGAACGTGTTTGAGATCTCCGCCGCAGTCCTGACGTCTTTCCTTGCCCGTGCCTTTGGAAGCATC AGGTTCAATGGGGAACCTCTGTTCTGCTTTTCTGCCCTCGCACAGTCGGCCATCGCCCTCATCCTGCCAGGATAC ACTGTATTATGTGCTAGTCTGGAGCTCCAGTCACGCAGTATCGTTGCAGGTTCTGTTCGCATGGTCTATGCTATC ATATACTCGCTGTTCCTCGGATTTGGAATTACCATCGGCACTGCCGTTTACGGGCTCCTCGACTCTCAAGCTTCA ACGGCGTATACATGTCCCGCCAGCCCCATCCACAACGAGTACCTGCAACGGTTTCCGTTCGTCATCCTATTCACT GTGTGCCTGGCGATCGTCAACCGCGCCAAGTGGAAGCAAATGCCGATTATGATAGTGATCTCCCTGGCTGGCTAC GTGACCAACTACTTCAGCGCCAAGCGCTTCTATTCCAACACCCAGGTGTCCAATGCCCTGGGCGCCTTTGTCATT GGTGTGATGGGCAATTTCTACAGCCGCTTACAGCATGGGCTCGCCGCTGCGGCAATGCTGCCGGCAATCTTTGTC CTCGTTCCCTCCGGTCTTGCCGCTAGTGGGTCTCTGATATCTGGTATTACTTCTGCTGAGGAAATGACCCGGTCT CCATATGCGGTTGTGAACAATGGGACACAAGGATTTGTCGACGCGGCAAAGAAGCTATCAGCCGACGAGGCGAGA AGCCAAAGCTACGGGGTTGTTTTCGATATCGGATATGGCATGGTTCAAGTTGCTATTGGAACGACAGTTGGTCTC TTCCTAGCCGCTTTGGTGGTTTATCCGCTAGGCAAGAAGCGAAGCGGATTGTTCAGTTTCTAG |
| Gene | >Pro_DTO377G3_2|g1780.t1 ATGGCGGGAGGTTATTTTGACCTTCCGATCTCCCGCAGCGCCTCTGAGGAAGGATCGTCCAGTCTATCAAGGTCG CGTTCCTTTACATCATCACTGCTCATTGATAGCTTCCAAGGCCAGCCAGTGTCTCAGGTGCGGAGCTTCAGTGAC GCTAGCGCACAGGACAAGTATCGGAATGCCGGCATTCTGAAAAACACAAATCGCGTCAAGCTTACGGACAGCGAA TCCGATTTGAGAGAACAACCCACTGGGCCTATGGTCGAATTCCGACTGGATCAAAGGGGCACCGAGCTGCCGCAA AGACCATTACCCACTGCCAACATTCCGGGCTTTCAGGAGAAAGTATCCTCAAGCTCCCCACTGGCACCACAGGTG GAAGACGATCATTTTAGCGCGTCAGCGGGTGTTACCGGTTTGACGATCAGCACCAGGACTAGCTCACCAGGAACT TCAGCAGAGTATGAGCTTGGTCAGGGTACGAACGACAAGGGGCGGGCCATCTGCTTTGCACATGAAAGGGCCCAC AGGCTCACATCCCTTCTCAATTGCCCGCATAATTGTCCGAAGCAAAGCCCCCAGTGCAGTCTAGTGTCTGAGATT GGATCCACCCCCACCGAAGTGGTGTGCCAGACTGCAGATGAAGATAAATTTCCTGTGATAAGCTTCCCCGAGAAA CAACAACTCTTCGACAACCTAATAGATGAACATGAAGCGGAATTCTTAGACGGGCGATCAACACCGTGCAACTCC GGAGCACATTATCTAGTGCATCAAATGTCACCTCGAGACCTGAACTTTCTGACTCGCCTTCGCCCTCAGTCTCCC GGGTTGCACTCCAGTGACCAAGACACCGTCAGCGAGGACAGGAACTCATACGAGTCTGCTGAACGGACGACAAGT TATCACGGAGGAATTCTCTCATCGCTGCTCAAGCTCTACGAGAAGCCTCGTTATAACCACAACCAAGGTCGAGGA CGGTATGGGCGGTCTCGACAGGGGAGCTCTTCCGAGTTCAGTGGACGTGGCCTGTCTCCAGACTCCGTTTGGAAA CCGCAAAGGAAGTGGTACGATAAATCAACCGCTCGTTCTAGCATTTCCATGGCCGGCTCCTCCCGCCGCTCTGGC TCCCCCTTTGCCATGCTCACGCGGTCCCGCAGCAGTGGTGCGGCCGTTCCAAACCTAAGCCGCTCACGTCCCAAG GCTCAGCTTGAGGATGAAATTCATATCACTGTTCATATTGCCGAGCTTCTGTCTCGACAACGGTACTTGATCCAG CTTTGTCGCGCTTTGATGAAGTATGGAGCTCCAACTCATCGATTGGAGGAATATATGCGCATGACAGCTCGCGTC ATCCAAATAGATGGCCAGTTTTTGTACATACCCGGCTGCATGATCATCTCCTTTGACGACGCCTCCACACACACA ACAGAGGTCAAAGTCGTCCGATCCAGTCAAGGCATTGACCTGGGTAAGCTGGCTGATGTGCATGAGATTTATAAG GAAGTGATTCACGATGTTATTGGGGTTGAAGAGGCAATACAGCGGCTCGATGAGGTCATGAAGAAGCAGAGCAAA TTCCACATTATGTTCCTCATCTTCGCCCACGGCTGTGCTAGCGCATCAGTCGGGCCCTTTGCCTTCAACGCCCGA CCGGTGGATATCCCCGTGGCGTTTCTACTGGGATGTCTCCTCGGCGTGTTACAATTGATCCTGTCAACCAAATCG AGCCTATATTCGAACGTGTTTGAGATCTCCGCCGCAGTCCTGACGTCTTTCCTTGCCCGTGCCTTTGGAAGCATC AGGTTCAATGGGGAACCTCTGTTCTGCTTTTCTGCCCTCGCACAGTCGGCCATCGCCCTCATCCTGCCAGGATAC ACTGTATTATGTGCTAGTCTGGAGCTCCAGTCACGCAGTATCGTTGCAGGTTCTGTTCGCATGGTCTATGCTATC ATATACTCGCTGTTCCTCGGATTTGGAATTACCATCGGCACTGCCGTTTACGGGCTCCTCGACTCTCAAGCTTCA ACGGCGTATACATGTCCCGCCAGCCCCATCCACAACGAGTACCTGCAACGGTTTCCGTTCGTCATCCTATTCACT GTGTGCCTGGCGATCGTCAACCGCGCCAAGTGGAAGCAAATGCCGATTATGATAGTGATCTCCCTGGCTGGCTAC GTGACCAACTACTTCAGCGCCAAGCGCTTCTATTCCAACACCCAGGTGTCCAATGCCCTGGGCGCCTTTGTCATT GGTGTGATGGGCAATTTCTACAGCCGCTTACAGCATGGGCTCGCCGCTGCGGCAATGCTGCCGGCAATCTTTGTC CTCGTTCCCTCCGGTCTTGCCGCTAGTGGGTCTCTGATATCTGGTATTACTTCTGCTGAGGAAATGACCCGGTCT CCATATGCGGTTGTGAACAATGGGACACAAGGATTTGTCGACGCGGCAAAGAAGCTATCAGCCGACGAGGCGAGA AGCCAAAGCTACGGGGTTGTTTTCGATATCGGATATGGCATGGTTCAAGTTGCTATTGGAACGACAGTTGGTCTC TTCCTAGCCGCTTTGGTGGTTTATCCGCTAGGCAAGAAGCGAAGCGGATTGTTCAGTTTCTAG |