© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1774.t1 |
| Gene name | |
| Location | scaffold_02:788264..789680 |
| Strand | - |
| Gene length (bp) | 1416 |
| Transcript length (bp) | 1308 |
| Coding sequence length (bp) | 1308 |
| Protein length (aa) | 436 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.2E-20 | 59 | 324 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 69 | 19 |
| 2 | 84 | 101 | 17 |
| 3 | 108 | 130 | 22 |
| 4 | 140 | 162 | 22 |
| 5 | 169 | 191 | 22 |
| 6 | 201 | 223 | 22 |
| 7 | 244 | 266 | 22 |
| 8 | 281 | 303 | 22 |
| 9 | 310 | 332 | 22 |
| 10 | 337 | 359 | 22 |
| 11 | 372 | 394 | 22 |
| 12 | 404 | 426 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.56 | 0.0 | 1.20 |
| 5d_25C | Five days - 25 degrees Celsius | 0.39 | 0.0 | 0.90 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.14 | 0.0 | 2.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.71 | 0.0 | 1.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.79 | 0.0 | 1.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.26 | 0.1 | 2.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 0.303367 | no |
| 3d_25C | 7d_15C | 0.666646 | no |
| 3d_25C | 7d_30C | 0.190552 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 0.159178 | no |
| 5d_25C | 7d_15C | 0.377369 | no |
| 5d_25C | 7d_30C | 0.113255 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.639853 | no |
| 7d_25C | 7d_30C | 0.911386 | no |
| 7d_25C | 10d_25C | 0.525886 | no |
| 7d_15C | 7d_30C | 0.484021 | no |
| 7d_15C | 10d_25C | 0.910570 | no |
| 7d_30C | 10d_25C | 0.383303 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1774.t1 MTAYESSGAIASGEEKGNNTQTPNAPVRDTSNAPLPPPPDGGFHAWAQVVAGHLVVALTWGYASSFGVFQNYYES TLPQAPSDISWIGGFQVFCLLFISTLSGRATDAGLARPVVALGGLLLVIGTFMTSLATDYWQIFLAQGLCIGIGQ GLMWLPTVTLISTYFVRYRVFAVTAAATGTSTGGMIFPAMIQYLTPKIGFPWAVRCMGFVVLIMVIITLALLRPR LPPRKAGPLIEWSAFKEPAYMLFTLGVFLLYWTLYFAFFYVQVYATEKLRLSQEAGVNLIIVTNALGIPIRAPCG YLADRYIGPLNLLIPWVALCGILMFCWAAVHTVAELYIFAVFYGLASAAAMGLFAGTIPSLTKDLDKIGTRVGMS LSMISFGPLTGPSVAGALIARTGGGYLAGQIWAGSALLVGVLALGGARVIISGPHLRAKL* |
| Coding | >Pro_DTO377G3_2|g1774.t1 ATGACAGCCTACGAGTCTTCCGGAGCAATTGCGAGCGGGGAAGAGAAAGGGAACAATACCCAAACACCAAATGCG CCAGTGAGAGATACGTCAAATGCACCATTGCCCCCACCTCCAGATGGCGGATTTCATGCCTGGGCTCAGGTCGTT GCAGGACACTTGGTCGTAGCCCTGACTTGGGGCTACGCCTCCAGCTTCGGGGTGTTCCAAAATTATTATGAGTCT ACGCTACCACAAGCCCCCTCCGATATTTCGTGGATCGGTGGATTCCAAGTCTTCTGTCTTTTGTTTATCTCAACG CTCTCCGGCCGCGCAACAGATGCTGGATTGGCAAGGCCGGTGGTAGCCCTAGGTGGGCTGCTGTTAGTTATCGGG ACCTTTATGACGAGTCTGGCCACGGATTACTGGCAGATCTTTCTGGCTCAGGGACTTTGTATTGGCATCGGCCAG GGTCTCATGTGGCTGCCTACTGTGACATTGATCTCGACATACTTTGTCCGCTATCGGGTCTTTGCCGTCACAGCT GCTGCCACGGGAACAAGTACGGGGGGCATGATTTTCCCTGCAATGATCCAGTATCTTACCCCGAAGATCGGGTTT CCATGGGCTGTCAGGTGTATGGGATTTGTCGTGCTCATCATGGTCATAATCACCTTAGCACTTTTGCGTCCTCGA CTACCACCACGCAAAGCGGGACCACTGATTGAATGGAGCGCTTTCAAGGAACCGGCCTACATGCTTTTTACCTTG GGGGTATTCCTTCTATACTGGACCCTTTATTTTGCCTTCTTCTACGTGCAAGTCTATGCGACTGAAAAGCTCAGA TTGTCCCAAGAAGCCGGAGTGAATTTAATTATCGTCACCAACGCCCTTGGGATACCCATTCGCGCCCCTTGTGGC TATCTGGCCGATCGTTATATCGGGCCGCTCAACCTACTGATTCCTTGGGTAGCGCTGTGCGGCATTCTGATGTTC TGCTGGGCCGCCGTTCATACTGTGGCCGAGTTATATATCTTTGCTGTGTTTTATGGACTGGCATCGGCGGCCGCT ATGGGCTTGTTCGCTGGCACTATTCCTTCATTGACCAAAGACCTGGACAAGATCGGCACTCGGGTCGGCATGTCG CTCTCTATGATAAGCTTCGGACCCTTGACCGGGCCATCCGTGGCGGGAGCGTTGATCGCGCGCACGGGAGGTGGC TATTTGGCTGGGCAAATATGGGCAGGATCAGCCTTGCTCGTGGGAGTATTGGCTCTTGGGGGAGCACGGGTCATA ATATCCGGGCCACATCTCCGAGCAAAACTATGA |
| Transcript | >Pro_DTO377G3_2|g1774.t1 ATGACAGCCTACGAGTCTTCCGGAGCAATTGCGAGCGGGGAAGAGAAAGGGAACAATACCCAAACACCAAATGCG CCAGTGAGAGATACGTCAAATGCACCATTGCCCCCACCTCCAGATGGCGGATTTCATGCCTGGGCTCAGGTCGTT GCAGGACACTTGGTCGTAGCCCTGACTTGGGGCTACGCCTCCAGCTTCGGGGTGTTCCAAAATTATTATGAGTCT ACGCTACCACAAGCCCCCTCCGATATTTCGTGGATCGGTGGATTCCAAGTCTTCTGTCTTTTGTTTATCTCAACG CTCTCCGGCCGCGCAACAGATGCTGGATTGGCAAGGCCGGTGGTAGCCCTAGGTGGGCTGCTGTTAGTTATCGGG ACCTTTATGACGAGTCTGGCCACGGATTACTGGCAGATCTTTCTGGCTCAGGGACTTTGTATTGGCATCGGCCAG GGTCTCATGTGGCTGCCTACTGTGACATTGATCTCGACATACTTTGTCCGCTATCGGGTCTTTGCCGTCACAGCT GCTGCCACGGGAACAAGTACGGGGGGCATGATTTTCCCTGCAATGATCCAGTATCTTACCCCGAAGATCGGGTTT CCATGGGCTGTCAGGTGTATGGGATTTGTCGTGCTCATCATGGTCATAATCACCTTAGCACTTTTGCGTCCTCGA CTACCACCACGCAAAGCGGGACCACTGATTGAATGGAGCGCTTTCAAGGAACCGGCCTACATGCTTTTTACCTTG GGGGTATTCCTTCTATACTGGACCCTTTATTTTGCCTTCTTCTACGTGCAAGTCTATGCGACTGAAAAGCTCAGA TTGTCCCAAGAAGCCGGAGTGAATTTAATTATCGTCACCAACGCCCTTGGGATACCCATTCGCGCCCCTTGTGGC TATCTGGCCGATCGTTATATCGGGCCGCTCAACCTACTGATTCCTTGGGTAGCGCTGTGCGGCATTCTGATGTTC TGCTGGGCCGCCGTTCATACTGTGGCCGAGTTATATATCTTTGCTGTGTTTTATGGACTGGCATCGGCGGCCGCT ATGGGCTTGTTCGCTGGCACTATTCCTTCATTGACCAAAGACCTGGACAAGATCGGCACTCGGGTCGGCATGTCG CTCTCTATGATAAGCTTCGGACCCTTGACCGGGCCATCCGTGGCGGGAGCGTTGATCGCGCGCACGGGAGGTGGC TATTTGGCTGGGCAAATATGGGCAGGATCAGCCTTGCTCGTGGGAGTATTGGCTCTTGGGGGAGCACGGGTCATA ATATCCGGGCCACATCTCCGAGCAAAACTATGA |
| Gene | >Pro_DTO377G3_2|g1774.t1 ATGACAGCCTACGAGTCTTCCGGAGCAATTGCGAGCGGGGAAGAGAAAGGGAACAATACCCAAACACCAAATGCG CCAGTGAGAGATACGTCAAATGCACCATTGCCCCCACCTCCAGATGGCGGATTTCATGCCTGGGCTCAGGTCGTT GCAGGACACTTGGTCGTAGCCCTGACTTGGGGCTACGCCTCCAGCTTCGGGGTGTTCCAAAATTATTATGAGTCT ACGCTACCACAAGCCCCCTCCGATATTTCGTGGATCGGTGGATTCCAAGTCTTCTGTCTTTTGTTTATCTCAACG CTCTCCGGCCGCGCAACAGATGCTGGATTGGCAAGGCCGGTGGTAGCCCTAGGTGGGCTGCTGTTAGTTATCGGG ACCTTTATGACGAGTCTGGCCACGGATTACTGGCAGATCTTTCTGGCTCAGGGACTTTGTATTGGCATCGGCCAG GGTCTCATGTGGCTGCCTACTGTGACATTGATCTCGACATACTTTGTCCGCTATCGGGTCTTTGCCGTCACAGCT GCTGCCACGGGAACAAGTACGGGGGGCATGATTTTCCCTGCAATGATCCAGTATCTTACCCCGAAGATCGGTAAG TCTATTTCAGCCGCACTGGTTTTCATAGCTAATCAGATAAATACATAATCAGGGTTTCCATGGGCTGTCAGGTGT ATGGGATTTGTCGTGCTCATCATGGTCATAATCACCTTAGCACTTTTGCGTCCTCGACTACCACCACGCAAAGCG GGACCACTGATTGAATGGAGCGCTTTCAAGGAACCGGCCTACATGCTTTTTACCTTGGGGGTATTCCTTCTATAC TGGACCCTTTATTTTGCCTTCTTCTACGTACGCTGCCAAATCCAAGATCTATAATTAATTGGGCTGACGGTTTTC CAGGTGCAAGTCTATGCGACTGAAAAGCTCAGATTGTCCCAAGAAGCCGGAGTGAATTTAATTATCGTCACCAAC GCCCTTGGGATACCCATTCGCGCCCCTTGTGGCTATCTGGCCGATCGTTATATCGGGCCGCTCAACCTACTGATT CCTTGGGTAGCGCTGTGCGGCATTCTGATGTTCTGCTGGGCCGCCGTTCATACTGTGGCCGAGTTATATATCTTT GCTGTGTTTTATGGACTGGCATCGGCGGCCGCTATGGGCTTGTTCGCTGGCACTATTCCTTCATTGACCAAAGAC CTGGACAAGATCGGCACTCGGGTCGGCATGTCGCTCTCTATGATAAGCTTCGGACCCTTGACCGGGCCATCCGTG GCGGGAGCGTTGATCGCGCGCACGGGAGGTGGCTATTTGGCTGGGCAAATATGGGCAGGATCAGCCTTGCTCGTG GGAGTATTGGCTCTTGGGGGAGCACGGGTCATAATATCCGGGCCACATCTCCGAGCAAAACTATGA |