© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1765.t1 |
| Gene name | |
| Location | scaffold_02:770736..771708 |
| Strand | + |
| Gene length (bp) | 972 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02089 | Palm_thioest | Palmitoyl protein thioesterase | 2.7E-89 | 34 | 289 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 111.44 | 67.80 | 155.07 |
| 5d_25C | Five days - 25 degrees Celsius | 110.29 | 66.86 | 153.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 112.00 | 67.33 | 156.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 148.93 | 91.12 | 206.74 |
| 7d_15C | Seven days - 15 degrees Celsius | 135.66 | 82.84 | 188.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 117.90 | 71.51 | 164.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.977802 | no |
| 3d_25C | 7d_25C | 0.989804 | no |
| 3d_25C | 7d_15C | 0.428908 | no |
| 3d_25C | 7d_30C | 0.860706 | no |
| 3d_25C | 10d_25C | 0.190465 | no |
| 5d_25C | 7d_25C | 0.966105 | no |
| 5d_25C | 7d_15C | 0.406227 | no |
| 5d_25C | 7d_30C | 0.833843 | no |
| 5d_25C | 10d_25C | 0.173334 | no |
| 7d_25C | 7d_15C | 0.447943 | no |
| 7d_25C | 7d_30C | 0.877126 | no |
| 7d_25C | 10d_25C | 0.202897 | no |
| 7d_15C | 7d_30C | 0.606714 | no |
| 7d_15C | 10d_25C | 0.745252 | no |
| 7d_30C | 10d_25C | 0.312568 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1765.t1 MRSITLLAALATNALSIALPWQSAPDTTSGTQLPLVIWHGLGDDFEREGLAEVANLAEATNPGTYVHLIRLANDG SGDRSAAFFGNVTEQIALVCEQLATDPILSTAPAVNALGFSQGGQFLRGYIERCNTPPVHNLVTFGSQHNGISAF ESCAYDNWFCKGAEQLLRSGRWTSFAQSRVVPAQYFRDPEDLDSYLEHSNFLADINNERAVKNETYKKNLAALNR FAMFMFEDDTVAVPKESALFSEVNATTGEVTALRERPIYKEDWVGLKQLDEQGKLDFNTAPGEHMDLSEKTLRKA FTQYFGPLEKSRPSPGLVVQPVF* |
| Coding | >Pro_DTO377G3_2|g1765.t1 ATGCGTTCTATCACACTGTTGGCCGCACTGGCCACCAACGCACTCTCAATCGCGCTCCCGTGGCAATCCGCCCCA GATACAACCAGCGGAACCCAACTCCCGCTCGTGATCTGGCACGGTCTAGGCGATGACTTCGAACGCGAAGGGCTG GCCGAAGTTGCCAATCTAGCCGAAGCCACCAACCCCGGCACCTACGTGCACCTCATCCGCCTAGCCAACGACGGC AGCGGCGACCGCTCCGCAGCCTTTTTCGGCAACGTAACAGAGCAAATCGCGCTAGTCTGCGAGCAGCTCGCCACA GACCCAATCCTCAGCACAGCGCCCGCCGTCAACGCACTAGGCTTCTCACAGGGCGGCCAATTCCTCCGCGGGTAC ATCGAGCGGTGCAACACGCCGCCCGTGCACAACCTCGTCACATTCGGCAGCCAGCACAACGGCATCTCGGCGTTC GAGTCGTGCGCCTACGACAATTGGTTCTGCAAGGGCGCGGAGCAGCTCCTGCGGTCGGGACGGTGGACGAGCTTT GCGCAGTCGCGCGTCGTGCCGGCGCAGTACTTCCGCGATCCGGAAGACCTGGATTCGTACCTCGAGCACAGCAAT TTTCTGGCGGATATCAACAACGAGCGGGCGGTCAAGAACGAGACGTATAAGAAGAATCTGGCGGCGCTGAATCGG TTTGCCATGTTTATGTTTGAGGATGATACGGTTGCTGTTCCGAAGGAGAGTGCTTTGTTCTCGGAGGTTAATGCT ACTACTGGTGAGGTGACGGCTCTGCGCGAGAGGCCGATCTATAAGGAGGATTGGGTCGGGCTGAAGCAGCTGGAT GAGCAGGGGAAGCTGGACTTCAATACTGCCCCTGGAGAGCATATGGATCTGTCTGAAAAGACGCTGCGCAAGGCT TTCACTCAGTACTTTGGTCCGCTGGAGAAGTCGCGTCCTTCGCCGGGTCTAGTTGTGCAGCCCGTGTTCTGA |
| Transcript | >Pro_DTO377G3_2|g1765.t1 ATGCGTTCTATCACACTGTTGGCCGCACTGGCCACCAACGCACTCTCAATCGCGCTCCCGTGGCAATCCGCCCCA GATACAACCAGCGGAACCCAACTCCCGCTCGTGATCTGGCACGGTCTAGGCGATGACTTCGAACGCGAAGGGCTG GCCGAAGTTGCCAATCTAGCCGAAGCCACCAACCCCGGCACCTACGTGCACCTCATCCGCCTAGCCAACGACGGC AGCGGCGACCGCTCCGCAGCCTTTTTCGGCAACGTAACAGAGCAAATCGCGCTAGTCTGCGAGCAGCTCGCCACA GACCCAATCCTCAGCACAGCGCCCGCCGTCAACGCACTAGGCTTCTCACAGGGCGGCCAATTCCTCCGCGGGTAC ATCGAGCGGTGCAACACGCCGCCCGTGCACAACCTCGTCACATTCGGCAGCCAGCACAACGGCATCTCGGCGTTC GAGTCGTGCGCCTACGACAATTGGTTCTGCAAGGGCGCGGAGCAGCTCCTGCGGTCGGGACGGTGGACGAGCTTT GCGCAGTCGCGCGTCGTGCCGGCGCAGTACTTCCGCGATCCGGAAGACCTGGATTCGTACCTCGAGCACAGCAAT TTTCTGGCGGATATCAACAACGAGCGGGCGGTCAAGAACGAGACGTATAAGAAGAATCTGGCGGCGCTGAATCGG TTTGCCATGTTTATGTTTGAGGATGATACGGTTGCTGTTCCGAAGGAGAGTGCTTTGTTCTCGGAGGTTAATGCT ACTACTGGTGAGGTGACGGCTCTGCGCGAGAGGCCGATCTATAAGGAGGATTGGGTCGGGCTGAAGCAGCTGGAT GAGCAGGGGAAGCTGGACTTCAATACTGCCCCTGGAGAGCATATGGATCTGTCTGAAAAGACGCTGCGCAAGGCT TTCACTCAGTACTTTGGTCCGCTGGAGAAGTCGCGTCCTTCGCCGGGTCTAGTTGTGCAGCCCGTGTTCTGA |
| Gene | >Pro_DTO377G3_2|g1765.t1 ATGCGTTCTATCACACTGTTGGCCGCACTGGCCACCAACGCACTCTCAATCGCGCTCCCGTGGCAATCCGCCCCA GATACAACCAGCGGAACCCAACTCCCGCTCGTGATCTGGCACGGTCTAGGCGATGACTTCGAACGCGAAGGGCTG GCCGAAGTTGCCAATCTAGCCGAAGCCACCAACCCCGGCACCTACGTGCACCTCATCCGCCTAGCCAACGACGGC AGCGGCGACCGCTCCGCAGCCTTTTTCGGCAACGTAACAGAGCAAATCGCGCTAGTCTGCGAGCAGCTCGCCACA GACCCAATCCTCAGCACAGCGCCCGCCGTCAACGCACTAGGCTTCTCACAGGGCGGCCAATTCCTCCGCGGGTAC ATCGAGCGGTGCAACACGCCGCCCGTGCACAACCTCGTCACATTCGGCAGCCAGCACAACGGCATCTCGGCGTTC GAGTCGTGCGCCTACGACAATTGGTTCTGCAAGGGCGCGGAGCAGCTCCTGCGGTCGGGACGGTGGACGAGCTTT GCGCAGTCGCGCGTCGTGCCGGCGCAGTACTTCCGCGATCCGGAAGACCTGGATTCGTACCTCGAGCACAGCAAT TTTCTGGCGGATATCAACAACGAGCGGGCGGTCAAGAACGAGACGTATAAGAAGAATCTGGCGGCGCTGAATCGG TTTGCCATGTTTATGTTTGAGGATGATACGGTTGCTGTTCCGAAGGAGAGTGCTTTGTTCTCGGAGGTTAATGCT ACTACTGGTGAGGTGACGGCTCTGCGCGAGAGGCCGATCTATAAGGAGGATTGGGTCGGGCTGAAGCAGCTGGAT GAGCAGGGGAAGCTGGACTTCAATACTGCCCCTGGAGAGCATATGGATCTGTCTGAAAAGACGCTGCGCAAGGCT TTCACTCAGTACTTTGGTCCGCTGGAGAAGTCGCGTCCTTCGCCGGGTCTAGTTGTGCAGCCCGTGTTCTGA |