© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g175.t1 |
| Gene name | |
| Location | scaffold_01:457781..458813 |
| Strand | + |
| Gene length (bp) | 1032 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01764 | Lipase_3 | Lipase (class 3) | 7.7E-30 | 103 | 233 |
| PF03893 | Lipase3_N | Lipase 3 N-terminal region | 2.5E-19 | 5 | 77 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016042 | lipid catabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.52 | 0.95 | 8.09 |
| 5d_25C | Five days - 25 degrees Celsius | 3.36 | 0.49 | 6.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.56 | 0.25 | 4.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.34 | 0.25 | 4.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.76 | 0.00 | 3.54 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.94 | 0.35 | 5.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.600453 | no |
| 3d_25C | 7d_25C | 0.246593 | no |
| 3d_25C | 7d_15C | 0.053684 | no |
| 3d_25C | 7d_30C | 0.423395 | no |
| 3d_25C | 10d_25C | 0.184643 | no |
| 5d_25C | 7d_25C | 0.656974 | no |
| 5d_25C | 7d_15C | 0.228456 | no |
| 5d_25C | 7d_30C | 0.850908 | no |
| 5d_25C | 10d_25C | 0.541765 | no |
| 7d_25C | 7d_15C | 0.530254 | no |
| 7d_25C | 7d_30C | 0.844721 | no |
| 7d_25C | 10d_25C | 0.905637 | no |
| 7d_15C | 7d_30C | 0.382816 | no |
| 7d_15C | 10d_25C | 0.666238 | no |
| 7d_30C | 10d_25C | 0.739277 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g175.t1 MRFSLFTALSAAASLGHALPGQLQARDVSTSELNQFDFWVQYAAAAYYADDYTAQVGAKISCSKGNCPQVEEAGA TVFYDFSNATITDTSGFIAVDHANEAVVLSFRGSYSVRNWVSDAIFVYTNPDLCDGCLADLGFWGSWVLVRDDII KELKEAVSQNPGYELAVVGHSLGAAVATLAVADLRGKGYPSAKLYAYASPRVANVPLAKHITAQGNNYRFTHTDD PVPKLPLLAMGYVHISPEYWITSPNNVTVGASDIKVIDGDISFAGNTGTGLPSLEDFEAHKWYFMKTDAGKNDGR PFKRV* |
| Coding | >Pro_DTO377G3_2|g175.t1 ATGCGTTTCTCTTTATTCACAGCGCTATCTGCAGCAGCATCGTTGGGTCATGCCCTCCCCGGTCAACTGCAAGCT CGAGATGTTTCGACTAGCGAACTGAACCAGTTCGACTTCTGGGTCCAGTATGCCGCCGCGGCATACTATGCCGAT GACTACACAGCTCAAGTGGGCGCCAAGATCAGTTGTTCGAAAGGAAACTGCCCCCAAGTGGAGGAAGCTGGTGCG ACTGTATTCTATGACTTCTCCAACGCCACCATCACAGATACTTCCGGCTTCATCGCAGTAGACCACGCCAACGAG GCAGTCGTTCTCTCCTTCCGCGGATCCTACTCAGTGCGCAACTGGGTCAGCGATGCCATATTCGTATACACAAAC CCTGATCTCTGTGATGGATGCCTGGCCGACCTCGGCTTCTGGGGCTCCTGGGTGCTTGTCCGCGACGACATCATC AAAGAACTGAAAGAAGCCGTCTCCCAGAACCCCGGTTACGAGCTGGCCGTAGTGGGCCACAGTCTCGGTGCCGCT GTCGCAACCCTTGCGGTGGCTGATCTCCGGGGCAAAGGCTACCCGTCGGCTAAGCTGTATGCGTATGCCTCGCCT CGGGTGGCGAACGTGCCTTTGGCTAAGCATATCACGGCTCAGGGGAACAACTACCGCTTCACTCACACCGATGAC CCGGTGCCTAAGCTGCCGTTGCTGGCCATGGGCTATGTTCATATCAGCCCTGAGTATTGGATCACCTCGCCTAAC AATGTGACTGTCGGTGCTTCTGATATCAAGGTTATTGACGGAGATATCTCATTTGCTGGAAACACTGGAACTGGT CTCCCATCATTGGAGGATTTCGAGGCGCATAAGTGGTACTTTATGAAGACTGATGCAGGAAAGAATGATGGGAGG CCGTTCAAGAGGGTTTGA |
| Transcript | >Pro_DTO377G3_2|g175.t1 ATGCGTTTCTCTTTATTCACAGCGCTATCTGCAGCAGCATCGTTGGGTCATGCCCTCCCCGGTCAACTGCAAGCT CGAGATGTTTCGACTAGCGAACTGAACCAGTTCGACTTCTGGGTCCAGTATGCCGCCGCGGCATACTATGCCGAT GACTACACAGCTCAAGTGGGCGCCAAGATCAGTTGTTCGAAAGGAAACTGCCCCCAAGTGGAGGAAGCTGGTGCG ACTGTATTCTATGACTTCTCCAACGCCACCATCACAGATACTTCCGGCTTCATCGCAGTAGACCACGCCAACGAG GCAGTCGTTCTCTCCTTCCGCGGATCCTACTCAGTGCGCAACTGGGTCAGCGATGCCATATTCGTATACACAAAC CCTGATCTCTGTGATGGATGCCTGGCCGACCTCGGCTTCTGGGGCTCCTGGGTGCTTGTCCGCGACGACATCATC AAAGAACTGAAAGAAGCCGTCTCCCAGAACCCCGGTTACGAGCTGGCCGTAGTGGGCCACAGTCTCGGTGCCGCT GTCGCAACCCTTGCGGTGGCTGATCTCCGGGGCAAAGGCTACCCGTCGGCTAAGCTGTATGCGTATGCCTCGCCT CGGGTGGCGAACGTGCCTTTGGCTAAGCATATCACGGCTCAGGGGAACAACTACCGCTTCACTCACACCGATGAC CCGGTGCCTAAGCTGCCGTTGCTGGCCATGGGCTATGTTCATATCAGCCCTGAGTATTGGATCACCTCGCCTAAC AATGTGACTGTCGGTGCTTCTGATATCAAGGTTATTGACGGAGATATCTCATTTGCTGGAAACACTGGAACTGGT CTCCCATCATTGGAGGATTTCGAGGCGCATAAGTGGTACTTTATGAAGACTGATGCAGGAAAGAATGATGGGAGG CCGTTCAAGAGGGTTTGA |
| Gene | >Pro_DTO377G3_2|g175.t1 ATGCGTTTCTCTTTATTCACAGCGCTATCTGCAGCAGCATCGTTGGGTCATGCCCTCCCCGGTCAACTGCAAGCT CGAGGTACCATGCCACAAACATTGATCAGTGCATCTTGACCACCTCGCTCACACCCGGTTAGATGTTTCGACTAG CGAACTGAACCAGTTCGACTTCTGGGTCCAGTATGCCGCCGCGGCATACTATGCCGATGACTACACAGCTCAAGT GGGCGCCAAGATCAGTTGTTCGAAAGGAAACTGCCCCCAAGTGGAGGAAGCTGGTGCGACTGTATTCTATGACTT CTCCAAGTAAGCGACGTCCCCGATACAATACCCGACAAAACAATTTACTTACACATGCACAGCGCCACCATCACA GATACTTCCGGCTTCATCGCAGTAGACCACGCCAACGAGGCAGTCGTTCTCTCCTTCCGCGGATCCTACTCAGTG CGCAACTGGGTCAGCGATGCCATATTCGTATACACAAACCCTGATCTCTGTGATGGATGCCTGGCCGACCTCGGC TTCTGGGGCTCCTGGGTGCTTGTCCGCGACGACATCATCAAAGAACTGAAAGAAGCCGTCTCCCAGAACCCCGGT TACGAGCTGGCCGTAGTGGGCCACAGTCTCGGTGCCGCTGTCGCAACCCTTGCGGTGGCTGATCTCCGGGGCAAA GGCTACCCGTCGGCTAAGCTGTATGCGTATGCCTCGCCTCGGGTGGCGAACGTGCCTTTGGCTAAGCATATCACG GCTCAGGGGAACAACTACCGCTTCACTCACACCGATGACCCGGTGCCTAAGCTGCCGTTGCTGGCCATGGGCTAT GTTCATATCAGCCCTGAGTATTGGATCACCTCGCCTAACAATGTGACTGTCGGTGCTTCTGATATCAAGGTTATT GACGGAGATATCTCATTTGCTGGAAACACTGGAACTGGTCTCCCATCATTGGAGGATTTCGAGGCGCATAAGTGG TACTTTATGAAGACTGATGCAGGAAAGAATGATGGGAGGCCGTTCAAGAGGGTTTGA |