© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1746.t1 |
| Gene name | |
| Location | scaffold_02:730694..732064 |
| Strand | - |
| Gene length (bp) | 1370 |
| Transcript length (bp) | 1263 |
| Coding sequence length (bp) | 1263 |
| Protein length (aa) | 421 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03114 | BAR | BAR domain | 8.4E-63 | 6 | 246 |
| PF00018 | SH3_1 | SH3 domain | 2.2E-13 | 367 | 414 |
| PF14604 | SH3_9 | Variant SH3 domain | 8.1E-12 | 368 | 418 |
| PF07653 | SH3_2 | Variant SH3 domain | 4.1E-09 | 368 | 418 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005737 | cytoplasm | Yes |
| GO:0005488 | binding | No |
| GO:0044424 | intracellular part | No |
| GO:0005575 | cellular_component | No |
| GO:0044464 | cell part | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1746.t1 MSFKGFQKSIARAPQQFKVKFNIGEHSKDAVYTDAERRFDELERETKKLHDESKKYFSAINGMLSHQIEFSKAVA EIYKPISGRASDPTSYQFEGNAEGIQACEEYEVIVQELQEALAPELEMINSRIISPADQLLEVIKVIRKVAVKRD HKKLDFDRRNATLKKLEEKKDKSLKDEKALYKAENDVEVATQEFNYYNDLLKDELPKLFALEAEFIRPLFQSFYY MQLNVFYTLHERMQGMNIAYFNLELDVEEAFEQKRGNIQEQAEALTIVHFKTQGVRRSGSKLGPPGKAGDIKRSD SKRSDTKGSIGRGRSASTATDDNPPPPYSSAGASPTGSFSSAAKSKAAPPPPKAKPSHLSKPVETVTALYDYEAQ AHGDLGFSAGDVIEITQRSENTNEWWSGRIGGREGQFPANYVELN* |
| Coding | >Pro_DTO377G3_2|g1746.t1 ATGAGTTTTAAAGGCTTCCAGAAGAGTATTGCGCGTGCGCCACAGCAGTTCAAGGTCAAGTTCAACATCGGTGAG CATTCCAAGGATGCTGTCTATACCGATGCCGAACGCCGCTTTGATGAGCTCGAGCGAGAGACCAAGAAGCTCCAC GATGAGTCCAAGAAATACTTTTCTGCCATTAATGGCATGTTGAGCCACCAAATTGAATTCTCCAAAGCAGTCGCC GAAATCTACAAACCCATCTCCGGTCGCGCCTCCGATCCCACCTCCTACCAATTCGAAGGAAATGCCGAGGGCATC CAGGCCTGTGAGGAATATGAAGTCATTGTCCAGGAACTCCAAGAGGCCCTAGCCCCCGAGCTGGAGATGATCAAC AGCCGCATTATCAGCCCGGCCGACCAGCTGCTCGAGGTGATCAAGGTGATCCGGAAGGTCGCGGTTAAGCGTGAT CACAAGAAGCTGGACTTTGATCGCCGCAACGCGACACTGAAAAAGCTCGAAGAGAAAAAGGACAAATCGCTCAAA GACGAGAAAGCACTATACAAAGCCGAGAACGATGTTGAGGTGGCAACCCAGGAGTTTAACTATTACAACGATTTA CTAAAGGACGAACTGCCCAAGCTGTTCGCCCTCGAAGCCGAGTTCATCCGCCCGCTCTTCCAGTCTTTCTACTAT ATGCAACTCAACGTCTTCTACACCCTCCACGAACGAATGCAGGGTATGAACATCGCCTATTTCAATCTTGAACTC GACGTGGAAGAGGCCTTTGAGCAGAAGCGCGGCAATATCCAGGAACAAGCTGAAGCCCTTACCATCGTGCACTTT AAAACCCAAGGCGTCCGCCGCTCTGGATCCAAACTAGGCCCTCCGGGCAAGGCAGGCGATATCAAGAGATCCGAT AGCAAGAGATCCGATACCAAAGGCTCCATCGGCCGAGGCCGTTCCGCCTCCACCGCCACCGATGACAACCCTCCA CCACCTTATTCGTCTGCCGGCGCTAGCCCGACAGGCAGCTTCTCTTCCGCCGCCAAGAGCAAGGCCGCCCCGCCT CCTCCAAAGGCGAAGCCGTCCCATCTCAGTAAGCCGGTTGAGACTGTCACCGCTCTTTATGACTACGAGGCTCAG GCACACGGTGATCTGGGATTCTCAGCTGGTGATGTTATTGAGATTACCCAGCGCTCTGAAAATACCAATGAATGG TGGTCTGGGCGAATTGGAGGTCGGGAGGGCCAGTTTCCGGCCAACTATGTGGAACTGAATTAG |
| Transcript | >Pro_DTO377G3_2|g1746.t1 ATGAGTTTTAAAGGCTTCCAGAAGAGTATTGCGCGTGCGCCACAGCAGTTCAAGGTCAAGTTCAACATCGGTGAG CATTCCAAGGATGCTGTCTATACCGATGCCGAACGCCGCTTTGATGAGCTCGAGCGAGAGACCAAGAAGCTCCAC GATGAGTCCAAGAAATACTTTTCTGCCATTAATGGCATGTTGAGCCACCAAATTGAATTCTCCAAAGCAGTCGCC GAAATCTACAAACCCATCTCCGGTCGCGCCTCCGATCCCACCTCCTACCAATTCGAAGGAAATGCCGAGGGCATC CAGGCCTGTGAGGAATATGAAGTCATTGTCCAGGAACTCCAAGAGGCCCTAGCCCCCGAGCTGGAGATGATCAAC AGCCGCATTATCAGCCCGGCCGACCAGCTGCTCGAGGTGATCAAGGTGATCCGGAAGGTCGCGGTTAAGCGTGAT CACAAGAAGCTGGACTTTGATCGCCGCAACGCGACACTGAAAAAGCTCGAAGAGAAAAAGGACAAATCGCTCAAA GACGAGAAAGCACTATACAAAGCCGAGAACGATGTTGAGGTGGCAACCCAGGAGTTTAACTATTACAACGATTTA CTAAAGGACGAACTGCCCAAGCTGTTCGCCCTCGAAGCCGAGTTCATCCGCCCGCTCTTCCAGTCTTTCTACTAT ATGCAACTCAACGTCTTCTACACCCTCCACGAACGAATGCAGGGTATGAACATCGCCTATTTCAATCTTGAACTC GACGTGGAAGAGGCCTTTGAGCAGAAGCGCGGCAATATCCAGGAACAAGCTGAAGCCCTTACCATCGTGCACTTT AAAACCCAAGGCGTCCGCCGCTCTGGATCCAAACTAGGCCCTCCGGGCAAGGCAGGCGATATCAAGAGATCCGAT AGCAAGAGATCCGATACCAAAGGCTCCATCGGCCGAGGCCGTTCCGCCTCCACCGCCACCGATGACAACCCTCCA CCACCTTATTCGTCTGCCGGCGCTAGCCCGACAGGCAGCTTCTCTTCCGCCGCCAAGAGCAAGGCCGCCCCGCCT CCTCCAAAGGCGAAGCCGTCCCATCTCAGTAAGCCGGTTGAGACTGTCACCGCTCTTTATGACTACGAGGCTCAG GCACACGGTGATCTGGGATTCTCAGCTGGTGATGTTATTGAGATTACCCAGCGCTCTGAAAATACCAATGAATGG TGGTCTGGGCGAATTGGAGGTCGGGAGGGCCAGTTTCCGGCCAACTATGTGGAACTGAATTAG |
| Gene | >Pro_DTO377G3_2|g1746.t1 ATGAGTTTTAAAGGCTTCCAGAAGAGTATTGCGCGTGCGCCACAGCAGTTCAAGGTCAAGTTCAACATCGGTGAG CATTCCAAGGATGCTGTCTATACCGATGCCGAACGCCGCTTTGATGAGCTCGAGCGAGAGACCAAGAAGCTCCAC GATGAGTCCAAGAAATACTTTTCTGCCATTAATGGTAACTCTTTGATCTCTCCACTCTATACCTCTCCCTACTGA TCGCGTGCGCAGGCATGTTGAGCCACCAAATTGAATTCTCCAAAGCAGTCGCCGAAATCTACAAACCCATCTCCG GTCGCGCCTCCGATCCCACCTCCTACCAATTCGAAGGAAATGCCGAGGGCATCCAGGCCTGTGAGGAATATGAAG TCATTGTCCAGGAACTCCAAGAGGCCCTAGCCCCCGAGCTGGAGATGATCAACAGCCGCATTATCAGCCCGGCCG ACCAGCTGCTCGAGGTGATCAAGGTGATCCGGAAGGTCGCGGTTAAGCGTGATCACAAGAAGCTGGACTTTGATC GCCGCAACGCGACACTGAAAAAGCTCGAAGAGAAAAAGGACAAATCGCTCAAAGACGAGAAAGCACTATACAAAG CCGAGAACGATGTTGAGGTGGCAACCCAGGAGTTTAACTATTACAACGATTTACTAAAGGACGAACTGCCCAAGC TGTTCGCCCTCGAAGCCGAGTTCATCCGCCCGCTCTTCCAGTCTTTCTACTATATGCAACTCAACGTCTTCTACA CCCTCCACGAACGAATGCAGGGTATGAACATCGCCTATTTCAATCTTGAACTCGACGTGGAAGAGGCCTTTGAGC AGAAGCGCGGCAATATCCAGGAACAAGCTGAAGCCCTTACCATCGTGCACTTTAAAACCCAAGGCGTCCGCCGCT CTGGATCCAAACTAGGCCCTCCGGGCAAGGCAGGCGATATCAAGAGATCCGATAGCAAGAGATCCGATACCAAAG GCTCCATCGGCCGAGGCCGTTCCGCCTCCACCGCCACCGATGACAACCCTCCACCACCTTATTCGTCTGCCGGCG CTAGCCCGACAGGCAGCTTCTCTTCCGCCGCCAAGAGCAAGGCCGCCCCGCCTCCTCCAAAGGCGAAGCCGTCCC ATCTCAGTAAGCCGGTTGAGACTGTCACCGCTCTTTATGACTACGAGGCTCAGGCACACGGTGATCTGGGATTCT CAGCTGGTGATGTTATTGAGATTACCCAGCGCTCTGAAAATACCAATGAATGGTGGTCTGGGCGAATTGGAGGTC GGGAGGGCCAGTTTCCGGGTAAGTGTTTCAAGTCTTTCTTGTTCAATTTATTACGTTTTCTAACATTCCTAGCCA ACTATGTGGAACTGAATTAG |