© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1740.t1 |
| Gene name | |
| Location | scaffold_02:718768..719908 |
| Strand | + |
| Gene length (bp) | 1140 |
| Transcript length (bp) | 1140 |
| Coding sequence length (bp) | 1140 |
| Protein length (aa) | 380 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09463 | Opy2 | Opy2 protein | 4.4E-08 | 20 | 54 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 71 | 93 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 23.05 | 10.96 | 35.14 |
| 5d_25C | Five days - 25 degrees Celsius | 20.83 | 9.50 | 32.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.74 | 11.94 | 37.55 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.01 | 12.26 | 37.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.08 | 5.79 | 26.37 |
| 7d_30C | Seven days - 30 degrees Celsius | 42.71 | 23.23 | 62.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.805733 | no |
| 3d_25C | 7d_25C | 0.871330 | no |
| 3d_25C | 7d_15C | 0.299702 | no |
| 3d_25C | 7d_30C | 0.016098 | yes |
| 3d_25C | 10d_25C | 0.842083 | no |
| 5d_25C | 7d_25C | 0.641931 | no |
| 5d_25C | 7d_15C | 0.492281 | no |
| 5d_25C | 7d_30C | 0.008807 | yes |
| 5d_25C | 10d_25C | 0.606758 | no |
| 7d_25C | 7d_15C | 0.200317 | no |
| 7d_25C | 7d_30C | 0.041216 | yes |
| 7d_25C | 10d_25C | 0.981105 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.177919 | no |
| 7d_30C | 10d_25C | 0.029538 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1740.t1 MSFEPMDSAFSPARSVFKRCKQCETTSPACPACPDGSICTMTAPSCDACATTKCVSTGAAPSNSGGTDTGAIAGG VVGGVAAIAIVVFLIWWFIIRKKRLERQEAEKNGSFAAARSERRSIASTVLTRASNVIQIAYIPGVTNRSPPQTP STLMPPIPPLPGATPDQHFFMPGDLRDSSWTTTTGHQSISPTLRSSVATTIYRNDAIVSAVPAQQIQRTRAAVVS IHNGGPGSANAPGDDSPVTVTITPADAPAVPAITPAQLARAEAVKGNSSCIARSVTAKPVMVRGPSVKNKQANNA PAANRVEELSGNSKSNDTSPTVSTTNSNQSSPFSSVEDEAADSSIRDARRASGLSDGRNSPRTPPARVESPFSDA NEVK* |
| Coding | >Pro_DTO377G3_2|g1740.t1 ATGTCTTTCGAACCCATGGATTCCGCCTTCTCCCCCGCCCGCTCCGTCTTCAAGCGCTGCAAGCAGTGTGAAACC ACATCCCCCGCCTGTCCCGCATGTCCCGATGGATCAATATGTACCATGACCGCCCCGAGCTGTGATGCATGCGCC ACCACTAAGTGCGTTTCAACGGGCGCCGCGCCCTCGAACTCCGGGGGCACCGACACTGGCGCTATTGCTGGTGGT GTTGTCGGAGGCGTGGCTGCCATCGCCATCGTTGTATTCTTGATATGGTGGTTCATCATCCGAAAGAAGCGCCTG GAGCGCCAGGAGGCGGAGAAGAACGGTTCATTCGCAGCAGCTCGCAGTGAACGCCGGTCCATCGCCTCTACAGTC CTAACCCGTGCCTCCAATGTAATCCAAATCGCTTACATTCCTGGTGTCACCAACCGCTCTCCACCGCAGACCCCA TCCACCCTTATGCCTCCTATTCCACCGCTTCCTGGTGCGACACCCGATCAACACTTCTTCATGCCGGGTGACCTG CGTGACTCGTCATGGACGACCACTACCGGCCACCAGAGCATCTCCCCCACTTTGCGCAGCAGTGTGGCCACCACC ATCTACCGCAACGATGCCATTGTCAGTGCCGTTCCTGCGCAGCAGATCCAGCGGACTCGGGCAGCCGTCGTGAGT ATCCACAACGGAGGACCTGGGTCAGCGAATGCCCCTGGAGACGACTCGCCCGTTACTGTCACGATTACCCCTGCA GACGCACCCGCTGTCCCAGCCATTACCCCGGCGCAACTCGCTCGGGCGGAGGCTGTCAAGGGCAACAGTTCATGT ATTGCTCGCAGTGTAACCGCCAAGCCAGTGATGGTGCGTGGCCCTTCGGTGAAGAACAAGCAAGCCAACAACGCG CCCGCTGCCAACCGAGTCGAAGAGCTGTCCGGGAACAGTAAAAGCAATGACACCAGCCCGACAGTATCAACCACA AACAGCAACCAGTCCAGTCCGTTCTCATCGGTCGAAGATGAAGCTGCTGATTCTTCGATTCGCGACGCACGTCGC GCTTCCGGCTTGAGTGACGGACGTAACTCCCCTCGGACGCCACCCGCACGGGTAGAAAGTCCATTCTCGGATGCC AATGAGGTGAAATGA |
| Transcript | >Pro_DTO377G3_2|g1740.t1 ATGTCTTTCGAACCCATGGATTCCGCCTTCTCCCCCGCCCGCTCCGTCTTCAAGCGCTGCAAGCAGTGTGAAACC ACATCCCCCGCCTGTCCCGCATGTCCCGATGGATCAATATGTACCATGACCGCCCCGAGCTGTGATGCATGCGCC ACCACTAAGTGCGTTTCAACGGGCGCCGCGCCCTCGAACTCCGGGGGCACCGACACTGGCGCTATTGCTGGTGGT GTTGTCGGAGGCGTGGCTGCCATCGCCATCGTTGTATTCTTGATATGGTGGTTCATCATCCGAAAGAAGCGCCTG GAGCGCCAGGAGGCGGAGAAGAACGGTTCATTCGCAGCAGCTCGCAGTGAACGCCGGTCCATCGCCTCTACAGTC CTAACCCGTGCCTCCAATGTAATCCAAATCGCTTACATTCCTGGTGTCACCAACCGCTCTCCACCGCAGACCCCA TCCACCCTTATGCCTCCTATTCCACCGCTTCCTGGTGCGACACCCGATCAACACTTCTTCATGCCGGGTGACCTG CGTGACTCGTCATGGACGACCACTACCGGCCACCAGAGCATCTCCCCCACTTTGCGCAGCAGTGTGGCCACCACC ATCTACCGCAACGATGCCATTGTCAGTGCCGTTCCTGCGCAGCAGATCCAGCGGACTCGGGCAGCCGTCGTGAGT ATCCACAACGGAGGACCTGGGTCAGCGAATGCCCCTGGAGACGACTCGCCCGTTACTGTCACGATTACCCCTGCA GACGCACCCGCTGTCCCAGCCATTACCCCGGCGCAACTCGCTCGGGCGGAGGCTGTCAAGGGCAACAGTTCATGT ATTGCTCGCAGTGTAACCGCCAAGCCAGTGATGGTGCGTGGCCCTTCGGTGAAGAACAAGCAAGCCAACAACGCG CCCGCTGCCAACCGAGTCGAAGAGCTGTCCGGGAACAGTAAAAGCAATGACACCAGCCCGACAGTATCAACCACA AACAGCAACCAGTCCAGTCCGTTCTCATCGGTCGAAGATGAAGCTGCTGATTCTTCGATTCGCGACGCACGTCGC GCTTCCGGCTTGAGTGACGGACGTAACTCCCCTCGGACGCCACCCGCACGGGTAGAAAGTCCATTCTCGGATGCC AATGAGGTGAAATGA |
| Gene | >Pro_DTO377G3_2|g1740.t1 ATGTCTTTCGAACCCATGGATTCCGCCTTCTCCCCCGCCCGCTCCGTCTTCAAGCGCTGCAAGCAGTGTGAAACC ACATCCCCCGCCTGTCCCGCATGTCCCGATGGATCAATATGTACCATGACCGCCCCGAGCTGTGATGCATGCGCC ACCACTAAGTGCGTTTCAACGGGCGCCGCGCCCTCGAACTCCGGGGGCACCGACACTGGCGCTATTGCTGGTGGT GTTGTCGGAGGCGTGGCTGCCATCGCCATCGTTGTATTCTTGATATGGTGGTTCATCATCCGAAAGAAGCGCCTG GAGCGCCAGGAGGCGGAGAAGAACGGTTCATTCGCAGCAGCTCGCAGTGAACGCCGGTCCATCGCCTCTACAGTC CTAACCCGTGCCTCCAATGTAATCCAAATCGCTTACATTCCTGGTGTCACCAACCGCTCTCCACCGCAGACCCCA TCCACCCTTATGCCTCCTATTCCACCGCTTCCTGGTGCGACACCCGATCAACACTTCTTCATGCCGGGTGACCTG CGTGACTCGTCATGGACGACCACTACCGGCCACCAGAGCATCTCCCCCACTTTGCGCAGCAGTGTGGCCACCACC ATCTACCGCAACGATGCCATTGTCAGTGCCGTTCCTGCGCAGCAGATCCAGCGGACTCGGGCAGCCGTCGTGAGT ATCCACAACGGAGGACCTGGGTCAGCGAATGCCCCTGGAGACGACTCGCCCGTTACTGTCACGATTACCCCTGCA GACGCACCCGCTGTCCCAGCCATTACCCCGGCGCAACTCGCTCGGGCGGAGGCTGTCAAGGGCAACAGTTCATGT ATTGCTCGCAGTGTAACCGCCAAGCCAGTGATGGTGCGTGGCCCTTCGGTGAAGAACAAGCAAGCCAACAACGCG CCCGCTGCCAACCGAGTCGAAGAGCTGTCCGGGAACAGTAAAAGCAATGACACCAGCCCGACAGTATCAACCACA AACAGCAACCAGTCCAGTCCGTTCTCATCGGTCGAAGATGAAGCTGCTGATTCTTCGATTCGCGACGCACGTCGC GCTTCCGGCTTGAGTGACGGACGTAACTCCCCTCGGACGCCACCCGCACGGGTAGAAAGTCCATTCTCGGATGCC AATGAGGTGAAATGA |