© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1731.t1 |
| Gene name | |
| Location | scaffold_02:700403..701206 |
| Strand | + |
| Gene length (bp) | 803 |
| Transcript length (bp) | 753 |
| Coding sequence length (bp) | 753 |
| Protein length (aa) | 251 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00657 | Lipase_GDSL | GDSL-like Lipase/Acylhydrolase | 5.8E-12 | 19 | 225 |
| PF13472 | Lipase_GDSL_2 | GDSL-like Lipase/Acylhydrolase family | 3.3E-11 | 23 | 218 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 26.57 | 11.81 | 41.34 |
| 5d_25C | Five days - 25 degrees Celsius | 26.08 | 11.56 | 40.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.20 | 7.62 | 30.78 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.79 | 8.69 | 32.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 27.52 | 12.42 | 42.62 |
| 7d_30C | Seven days - 30 degrees Celsius | 33.24 | 15.85 | 50.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.969854 | no |
| 3d_25C | 7d_25C | 0.372593 | no |
| 3d_25C | 7d_15C | 0.942250 | no |
| 3d_25C | 7d_30C | 0.535998 | no |
| 3d_25C | 10d_25C | 0.507695 | no |
| 5d_25C | 7d_25C | 0.407970 | no |
| 5d_25C | 7d_15C | 0.910217 | no |
| 5d_25C | 7d_30C | 0.501951 | no |
| 5d_25C | 10d_25C | 0.554031 | no |
| 7d_25C | 7d_15C | 0.318540 | no |
| 7d_25C | 7d_30C | 0.081384 | no |
| 7d_25C | 10d_25C | 0.874698 | no |
| 7d_15C | 7d_30C | 0.620675 | no |
| 7d_15C | 10d_25C | 0.436871 | no |
| 7d_30C | 10d_25C | 0.134199 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1731.t1 MKSAILLSAVIPSALGATIYLAGDSTMAKGGTGSGTAGWGEYVTPYTSLTVSNQAVAGRSARSYTREGRFDAIAA VVQSGDWVIIEFGHNDGGSLTPTDNGRTDCSGTGSETCSTTYDGVAETVLTFPAYVENATKVFKAKGANVIISSQ TPNNPWETGTFTYAPSRFVGYAQVAAAAAGVPYVDHGAYVADQFQTLGLTAVDAYFPLDHTHTSPTGASVVAQAF FKAVVCGDVALKSSLTTTSFPGSCL* |
| Coding | >Pro_DTO377G3_2|g1731.t1 ATGAAATCTGCTATTCTTCTCTCCGCGGTCATCCCCAGTGCGCTAGGTGCGACCATCTACCTCGCTGGTGACTCA ACTATGGCAAAGGGTGGGACTGGATCTGGCACAGCGGGTTGGGGTGAATATGTTACGCCCTATACCTCACTCACC GTGTCCAATCAAGCTGTCGCCGGCCGCAGCGCACGGTCATACACGCGTGAAGGTCGGTTCGATGCAATTGCAGCA GTGGTTCAATCAGGAGATTGGGTGATCATCGAGTTCGGCCACAACGACGGTGGCTCTTTGACTCCCACCGACAAC GGGCGCACCGATTGTTCTGGCACAGGAAGCGAGACTTGTAGCACAACCTACGACGGGGTCGCCGAGACAGTGTTG ACGTTCCCGGCATATGTCGAGAATGCCACCAAGGTGTTCAAGGCCAAGGGTGCGAATGTGATCATCTCGAGCCAA ACACCCAACAACCCCTGGGAAACTGGAACCTTCACCTATGCCCCCTCGCGGTTTGTGGGCTATGCGCAGGTGGCA GCTGCAGCCGCCGGAGTGCCCTATGTTGACCACGGGGCCTATGTGGCCGACCAGTTCCAGACGCTGGGCCTGACT GCTGTCGATGCCTACTTCCCCTTGGACCACACGCACACCAGTCCTACCGGTGCATCGGTAGTGGCCCAGGCCTTT TTCAAGGCTGTGGTTTGTGGTGATGTTGCGCTGAAGAGTTCCCTGACCACCACATCTTTCCCTGGTTCGTGTCTC TAA |
| Transcript | >Pro_DTO377G3_2|g1731.t1 ATGAAATCTGCTATTCTTCTCTCCGCGGTCATCCCCAGTGCGCTAGGTGCGACCATCTACCTCGCTGGTGACTCA ACTATGGCAAAGGGTGGGACTGGATCTGGCACAGCGGGTTGGGGTGAATATGTTACGCCCTATACCTCACTCACC GTGTCCAATCAAGCTGTCGCCGGCCGCAGCGCACGGTCATACACGCGTGAAGGTCGGTTCGATGCAATTGCAGCA GTGGTTCAATCAGGAGATTGGGTGATCATCGAGTTCGGCCACAACGACGGTGGCTCTTTGACTCCCACCGACAAC GGGCGCACCGATTGTTCTGGCACAGGAAGCGAGACTTGTAGCACAACCTACGACGGGGTCGCCGAGACAGTGTTG ACGTTCCCGGCATATGTCGAGAATGCCACCAAGGTGTTCAAGGCCAAGGGTGCGAATGTGATCATCTCGAGCCAA ACACCCAACAACCCCTGGGAAACTGGAACCTTCACCTATGCCCCCTCGCGGTTTGTGGGCTATGCGCAGGTGGCA GCTGCAGCCGCCGGAGTGCCCTATGTTGACCACGGGGCCTATGTGGCCGACCAGTTCCAGACGCTGGGCCTGACT GCTGTCGATGCCTACTTCCCCTTGGACCACACGCACACCAGTCCTACCGGTGCATCGGTAGTGGCCCAGGCCTTT TTCAAGGCTGTGGTTTGTGGTGATGTTGCGCTGAAGAGTTCCCTGACCACCACATCTTTCCCTGGTTCGTGTCTC TAA |
| Gene | >Pro_DTO377G3_2|g1731.t1 ATGAAATCTGCTATTCTTCTCTCCGCGGTCATCCCCAGTGCGCTAGGTGCGACCATCTACCTCGCTGGTGACTCA ACTATGGCAAAGGGTGGGACTGGATCTGGCACAGCGGGTACGTGTTTTCCTTGAAGCTTCCGGATAGCATCATGC TAATACTCCCAGGTTGGGGTGAATATGTTACGCCCTATACCTCACTCACCGTGTCCAATCAAGCTGTCGCCGGCC GCAGCGCACGGTCATACACGCGTGAAGGTCGGTTCGATGCAATTGCAGCAGTGGTTCAATCAGGAGATTGGGTGA TCATCGAGTTCGGCCACAACGACGGTGGCTCTTTGACTCCCACCGACAACGGGCGCACCGATTGTTCTGGCACAG GAAGCGAGACTTGTAGCACAACCTACGACGGGGTCGCCGAGACAGTGTTGACGTTCCCGGCATATGTCGAGAATG CCACCAAGGTGTTCAAGGCCAAGGGTGCGAATGTGATCATCTCGAGCCAAACACCCAACAACCCCTGGGAAACTG GAACCTTCACCTATGCCCCCTCGCGGTTTGTGGGCTATGCGCAGGTGGCAGCTGCAGCCGCCGGAGTGCCCTATG TTGACCACGGGGCCTATGTGGCCGACCAGTTCCAGACGCTGGGCCTGACTGCTGTCGATGCCTACTTCCCCTTGG ACCACACGCACACCAGTCCTACCGGTGCATCGGTAGTGGCCCAGGCCTTTTTCAAGGCTGTGGTTTGTGGTGATG TTGCGCTGAAGAGTTCCCTGACCACCACATCTTTCCCTGGTTCGTGTCTCTAA |