Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g173.t1
Gene name
Location	scaffold_01:451562..453944
Strand	-
Gene length (bp)	2382
Transcript length (bp)	2271
Coding sequence length (bp)	2271
Protein length (aa)	757

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	1.2E-23	644	721
PF04408	HA2	Helicase associated domain (HA2)	9.0E-18	491	579
PF00271	Helicase_C	Helicase conserved C-terminal domain	7.1E-10	290	428
PF00270	DEAD	DEAD/DEAH box helicase	5.6E-07	101	249

GO

GO Term	Description	Terminal node
GO:0005524	ATP binding	Yes
GO:0003676	nucleic acid binding	Yes
GO:0004386	helicase activity	Yes
GO:0003824	catalytic activity	No
GO:1901265	nucleoside phosphate binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0043167	ion binding	No
GO:0017076	purine nucleotide binding	No
GO:0097367	carbohydrate derivative binding	No
GO:0140657	ATP-dependent activity	No
GO:0030554	adenyl nucleotide binding	No
GO:0000166	nucleotide binding	No
GO:0005488	binding	No
GO:0036094	small molecule binding	No
GO:0003674	molecular_function	No
GO:0097159	organic cyclic compound binding	No
GO:0032553	ribonucleotide binding	No
GO:0032555	purine ribonucleotide binding	No
GO:1901363	heterocyclic compound binding	No
GO:0043168	anion binding	No
GO:0140640	catalytic activity, acting on a nucleic acid	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 30	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	21.77	12.34	31.21
5d_25C	Five days - 25 degrees Celsius	12.37	6.17	18.56
7d_25C	Seven days - 25 degrees Celsius	10.68	5.10	16.26
10d_25C	Ten days - 25 degrees Celsius	5.73	2.25	9.20
7d_15C	Seven days - 15 degrees Celsius	11.78	5.78	17.77
7d_30C	Seven days - 30 degrees Celsius	10.91	5.19	16.62

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.024170	yes
3d_25C	7d_25C	0.003197	yes
3d_25C	7d_15C	0.007779	yes
3d_25C	7d_30C	0.006742	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.690997	no
5d_25C	7d_15C	0.909237	no
5d_25C	7d_30C	0.740967	no
5d_25C	10d_25C	0.010411	yes
7d_25C	7d_15C	0.803925	no
7d_25C	7d_30C	0.963910	no
7d_25C	10d_25C	0.044177	yes
7d_15C	7d_30C	0.847870	no
7d_15C	10d_25C	0.015833	yes
7d_30C	10d_25C	0.035449	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g173.t1 MADNRSDSEGGARAKRQKMDAGDPKNNPYLAHMYENNNGSDNTALAKFKRHQTTAAMAKKAEDGDINPFSGRPFS SKYFSILKTRRDLPVHTQRDEFLQLYQQSQILVFVGETGSGKTTQIPQFVLYDDLPQTQGKMIACTQPRRVAAMS VAQRVAAEMDVKLGEEVGYSIRFEDMTGPKTIMKYMTDGMLLREAMNDPNMSRYSTIILDEAHERTMATDILMGL LKEVVVRRPDLKIIIMSATLDAQKFQRYFMDAPLLAVPGRTHPVEIFYTPEPEQDYVEAAVRTVLQIHATEGEGD ILLFLTGEEEIEDASRKIALEGDEMVREADAGPIKVYPLYGSLPPHMQQRIFDPAPPPRRPGGRPGRKVIVSTNI AETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEGAFKKELIEST YPEILRSNLSSTVLELKKLGVDDLVHFDLMDPPAPETLMRALEELNYLACLDDDGNLTQLGRLASDFPLDPALAV MLISSPEFYCSNEILSITALLSVPQVFVRPPAQRKRADEMKNLFAHPDGDHLTMLNVYHAYRSSDAQANPKQWCH DHFLSQRALQSADNVRSQLLRIMERQDLEMISTAFDDKKYYENIRRALCAGFFMQVAKKDTGGKSQYLTIKDNQN VLLHPSTVLAHEAEWVLYNEFVLTTKNYIRTVTAVKPEWLLDIAPTYYDINSFPKGDIRSALTRAADRLARKEKM RAEKRR*
Coding	>Pro_DTO377G3_2\|g173.t1 ATGGCTGATAACCGATCCGATTCCGAAGGGGGCGCGCGAGCGAAGCGCCAGAAGATGGACGCTGGGGACCCAAAG AACAACCCCTACCTCGCTCACATGTACGAGAACAACAATGGCTCCGACAACACGGCCCTGGCCAAGTTCAAGCGA CACCAGACAACCGCAGCGATGGCGAAAAAGGCCGAAGATGGCGATATCAACCCTTTCAGTGGCCGACCTTTTTCC AGCAAATATTTCTCAATCCTGAAGACCCGTCGCGATCTGCCTGTCCATACGCAACGTGATGAGTTCCTACAACTC TACCAACAGTCCCAGATCCTTGTCTTTGTTGGTGAGACTGGTTCCGGAAAGACTACGCAGATCCCGCAATTCGTC CTCTACGATGATCTCCCTCAAACTCAGGGCAAAATGATTGCTTGTACGCAGCCCCGACGAGTGGCTGCCATGTCC GTCGCCCAACGTGTCGCGGCTGAGATGGATGTCAAGCTTGGAGAGGAAGTTGGTTACAGTATCCGTTTCGAAGAC ATGACCGGCCCGAAGACCATCATGAAGTACATGACTGATGGTATGCTTCTTCGAGAGGCTATGAACGATCCCAAC ATGTCGCGCTACAGCACAATCATTCTTGACGAGGCTCACGAGAGAACCATGGCGACAGATATCCTGATGGGTCTT TTGAAGGAAGTTGTGGTGCGTCGGCCAGACTTGAAGATTATTATCATGTCGGCTACTTTGGATGCGCAAAAGTTC CAGCGGTACTTCATGGACGCGCCCCTTCTCGCAGTCCCTGGTCGTACCCACCCGGTCGAGATCTTCTACACCCCT GAACCTGAGCAAGATTACGTCGAGGCCGCAGTTCGGACTGTGCTGCAAATCCACGCCACTGAAGGTGAGGGAGAT ATTCTTCTTTTCTTGACTGGTGAGGAAGAGATTGAAGATGCTTCACGAAAAATCGCGCTTGAGGGAGATGAGATG GTTCGCGAGGCAGACGCTGGTCCTATCAAGGTCTACCCTTTGTACGGTAGTCTTCCTCCTCACATGCAACAGCGC ATCTTCGACCCTGCACCACCTCCTCGCCGACCAGGCGGCCGCCCCGGGCGCAAGGTCATCGTGTCGACCAACATC GCCGAAACATCTCTTACCATCGATGGTATTGTGTACGTCGTGGATCCTGGATTCTCCAAGCAAAAGATTTACAAC CCCCGCATTCGTGTCGAGTCACTCCTCGTTTCCCCTATCTCCAAGGCCTCCGCGCAGCAGCGAGCTGGTCGTGCC GGTCGTACACGTCCCGGAAAGTGCTTCCGTCTTTACACCGAGGGCGCATTCAAGAAGGAATTGATTGAGTCAACT TACCCCGAGATCCTGCGGTCAAACTTGTCATCAACCGTGCTCGAACTGAAGAAGCTTGGTGTTGATGATCTCGTC CACTTCGATTTGATGGACCCGCCTGCGCCAGAGACTCTGATGAGAGCATTGGAAGAACTGAACTATTTGGCCTGT CTGGATGATGATGGAAACCTTACTCAGCTAGGTCGTCTGGCCTCCGACTTCCCTCTCGACCCTGCCCTTGCTGTT ATGTTGATCAGCTCTCCCGAATTCTACTGCTCTAATGAAATCCTTTCCATCACCGCCCTTCTGTCTGTACCGCAG GTCTTCGTTCGTCCTCCTGCCCAGCGCAAGCGTGCCGATGAGATGAAGAACCTGTTTGCCCACCCCGACGGAGAC CATCTGACAATGCTGAACGTCTACCACGCATACCGAAGCAGTGACGCCCAGGCAAACCCCAAGCAGTGGTGCCAC GACCACTTCCTCTCCCAGCGGGCTCTCCAATCCGCTGATAATGTCCGCTCCCAGCTGCTCCGCATCATGGAACGC CAGGATCTCGAGATGATCTCCACTGCCTTCGATGACAAGAAGTACTACGAGAACATCCGCCGCGCCCTTTGCGCC GGTTTCTTTATGCAAGTCGCGAAGAAGGACACAGGCGGCAAGAGCCAATACCTTACCATCAAGGACAACCAGAAT GTGCTCCTGCACCCGTCCACCGTCCTGGCCCACGAGGCCGAATGGGTTTTGTATAACGAATTCGTTCTCACAACC AAGAACTACATCCGTACTGTCACTGCCGTCAAGCCAGAATGGCTTTTGGATATCGCCCCTACATACTACGATATC AACAGCTTCCCCAAGGGTGACATCCGCTCCGCCCTTACTCGGGCTGCTGATCGCCTCGCTCGCAAGGAGAAGATG CGCGCCGAGAAGCGTCGATAG
Transcript	>Pro_DTO377G3_2\|g173.t1 ATGGCTGATAACCGATCCGATTCCGAAGGGGGCGCGCGAGCGAAGCGCCAGAAGATGGACGCTGGGGACCCAAAG AACAACCCCTACCTCGCTCACATGTACGAGAACAACAATGGCTCCGACAACACGGCCCTGGCCAAGTTCAAGCGA CACCAGACAACCGCAGCGATGGCGAAAAAGGCCGAAGATGGCGATATCAACCCTTTCAGTGGCCGACCTTTTTCC AGCAAATATTTCTCAATCCTGAAGACCCGTCGCGATCTGCCTGTCCATACGCAACGTGATGAGTTCCTACAACTC TACCAACAGTCCCAGATCCTTGTCTTTGTTGGTGAGACTGGTTCCGGAAAGACTACGCAGATCCCGCAATTCGTC CTCTACGATGATCTCCCTCAAACTCAGGGCAAAATGATTGCTTGTACGCAGCCCCGACGAGTGGCTGCCATGTCC GTCGCCCAACGTGTCGCGGCTGAGATGGATGTCAAGCTTGGAGAGGAAGTTGGTTACAGTATCCGTTTCGAAGAC ATGACCGGCCCGAAGACCATCATGAAGTACATGACTGATGGTATGCTTCTTCGAGAGGCTATGAACGATCCCAAC ATGTCGCGCTACAGCACAATCATTCTTGACGAGGCTCACGAGAGAACCATGGCGACAGATATCCTGATGGGTCTT TTGAAGGAAGTTGTGGTGCGTCGGCCAGACTTGAAGATTATTATCATGTCGGCTACTTTGGATGCGCAAAAGTTC CAGCGGTACTTCATGGACGCGCCCCTTCTCGCAGTCCCTGGTCGTACCCACCCGGTCGAGATCTTCTACACCCCT GAACCTGAGCAAGATTACGTCGAGGCCGCAGTTCGGACTGTGCTGCAAATCCACGCCACTGAAGGTGAGGGAGAT ATTCTTCTTTTCTTGACTGGTGAGGAAGAGATTGAAGATGCTTCACGAAAAATCGCGCTTGAGGGAGATGAGATG GTTCGCGAGGCAGACGCTGGTCCTATCAAGGTCTACCCTTTGTACGGTAGTCTTCCTCCTCACATGCAACAGCGC ATCTTCGACCCTGCACCACCTCCTCGCCGACCAGGCGGCCGCCCCGGGCGCAAGGTCATCGTGTCGACCAACATC GCCGAAACATCTCTTACCATCGATGGTATTGTGTACGTCGTGGATCCTGGATTCTCCAAGCAAAAGATTTACAAC CCCCGCATTCGTGTCGAGTCACTCCTCGTTTCCCCTATCTCCAAGGCCTCCGCGCAGCAGCGAGCTGGTCGTGCC GGTCGTACACGTCCCGGAAAGTGCTTCCGTCTTTACACCGAGGGCGCATTCAAGAAGGAATTGATTGAGTCAACT TACCCCGAGATCCTGCGGTCAAACTTGTCATCAACCGTGCTCGAACTGAAGAAGCTTGGTGTTGATGATCTCGTC CACTTCGATTTGATGGACCCGCCTGCGCCAGAGACTCTGATGAGAGCATTGGAAGAACTGAACTATTTGGCCTGT CTGGATGATGATGGAAACCTTACTCAGCTAGGTCGTCTGGCCTCCGACTTCCCTCTCGACCCTGCCCTTGCTGTT ATGTTGATCAGCTCTCCCGAATTCTACTGCTCTAATGAAATCCTTTCCATCACCGCCCTTCTGTCTGTACCGCAG GTCTTCGTTCGTCCTCCTGCCCAGCGCAAGCGTGCCGATGAGATGAAGAACCTGTTTGCCCACCCCGACGGAGAC CATCTGACAATGCTGAACGTCTACCACGCATACCGAAGCAGTGACGCCCAGGCAAACCCCAAGCAGTGGTGCCAC GACCACTTCCTCTCCCAGCGGGCTCTCCAATCCGCTGATAATGTCCGCTCCCAGCTGCTCCGCATCATGGAACGC CAGGATCTCGAGATGATCTCCACTGCCTTCGATGACAAGAAGTACTACGAGAACATCCGCCGCGCCCTTTGCGCC GGTTTCTTTATGCAAGTCGCGAAGAAGGACACAGGCGGCAAGAGCCAATACCTTACCATCAAGGACAACCAGAAT GTGCTCCTGCACCCGTCCACCGTCCTGGCCCACGAGGCCGAATGGGTTTTGTATAACGAATTCGTTCTCACAACC AAGAACTACATCCGTACTGTCACTGCCGTCAAGCCAGAATGGCTTTTGGATATCGCCCCTACATACTACGATATC AACAGCTTCCCCAAGGGTGACATCCGCTCCGCCCTTACTCGGGCTGCTGATCGCCTCGCTCGCAAGGAGAAGATG CGCGCCGAGAAGCGTCGATAG
Gene	>Pro_DTO377G3_2\|g173.t1 ATGGCTGATAACCGATCCGATTCCGAAGGGGGCGCGCGAGCGAAGCGCCAGAAGATGGACGCTGGGGACCCAAAG AACAACCCCTACCTCGCTCACATGTACGAGAACAACAATGGCTCCGACAACACGGCCCTGGCCAAGTTCAAGCGA CACCAGACAACCGCAGCGATGGCGAAAAAGGCCGAAGATGGCGATATCAACCCTTTCAGTGGCCGACCTTTTTCC AGCAAATATTTCTCAATCCTGAAGACCCGTCGCGATCTGCCTGTCCATACGCAACGGTGAGTGCTGCCCGACAGC CATTCCGGAAGAAATATATATACTGACCATTTTATTCAGTGATGAGTTCCTACAACTCTACCAACAGTCCCAGAT CCTTGTCTTTGTTGGTGAGACTGGTTCCGGAAAGACTACGCAGATCCCGCAATTCGTCCTCTACGATGATCTCCC TCAAACTCAGGGCAAAATGATTGCTTGTACGCAGCCCCGACGAGTGGCTGCCATGTCCGTCGCCCAACGTGTCGC GGCTGAGATGGATGTCAAGCTTGGAGAGGAAGTTGGTTACAGTATCCGTTTCGAAGACATGACCGGCCCGAAGAC CATCATGAAGTACATGACTGATGGTATGCTTCTTCGAGAGGCTATGAACGATCCCAACATGTCGCGCTACAGCAC AATCATTCTTGACGAGGCTCACGAGAGAACCATGGCGACAGATATCCTGATGGGTCTTTTGAAGGAAGTTGTGGT GCGTCGGCCAGACTTGAAGATTATTATCATGTCGGCTACTTTGGATGCGCAAAAGTTCCAGCGGTACTTCATGGA CGCGCCCCTTCTCGCAGTCCCTGGTCGTACCCACCCGGTCGAGATCTTCTACACCCCTGAACCTGAGCAAGATTA CGTCGAGGCCGCAGTTCGGACTGTGCTGCAAATCCACGCCACTGAAGGTGAGGGAGATATTCTTCTTTTCTTGAC TGGTGAGGAAGAGATTGAAGATGCTTCACGAAAAATCGCGCTTGAGGGAGATGAGATGGTTCGCGAGGCAGACGC TGGTCCTATCAAGGTCTACCCTTTGTACGGTAGTCTTCCTCCTCACATGCAACAGCGCATCTTCGACCCTGCACC ACCTCCTCGCCGACCAGGCGGCCGCCCCGGGCGCAAGGTCATCGTGTCGACCAACATCGCCGAAACATCTCTTAC CATCGATGGTATTGTGTACGTCGTGGATCCTGGATTCTCCAAGCAAAAGATTTACAACCCCCGCATTCGTGTCGA GTCACTCCTCGTTTCCCCTATCTCCAAGGCCTCCGCGCAGCAGCGAGCTGGTCGTGCCGGTCGTACACGTCCCGG AAAGTGCTTCCGTCTTTACACCGAGGGCGCATTCAAGAAGGAATTGATTGAGTCAACTTACCCCGAGATCCTGCG GTCAAACTTGTCATCAACCGTGCTCGAACTGAAGAAGCTTGGTGTTGATGATCTCGTCCACTTCGATTTGATGGA CCCGCCTGCGCCAGAGACTCTGATGAGAGCATTGGAAGAACTGAACTATTTGGCCTGTCTGGATGATGATGGAAA CCTTACTCAGCTAGGTCGTCTGGCCTCCGACTTCCCTCTCGACCCTGCCCTTGCTGTTATGTTGATCAGCTCTCC CGAATTCTACTGCTCTAATGAAATCCTTTCCATCACCGCCCTTCTGTCTGTACCGCAGGTCTTCGTTCGTCCTCC TGCCCAGCGCAAGCGTGCCGATGAGATGAAGAACCTGTTTGCCCACCCCGACGGAGACCATCTGACAATGCTGAA CGTCTACCACGCATACCGAAGCAGTGACGCCCAGGCAAACCCCAAGCAGTGGTGCCACGACCACTTCCTCTCCCA GCGGGCTCTCCAATCCGCTGATAATGTCCGCTCCCAGCTGCTCCGCATCATGGAACGCCAGGATCTCGAGATGAT CTCCACTGCCTTCGATGACAAGAAGTACTACGAGAACATCCGCCGCGCCCTTTGCGCCGGTTTCTTTATGCAAGT CGCGAAGAAGGACACAGGCGGCAAGAGCCAATACCTTACCATCAAGGACAACCAGAATGTGCTCCTGCACCCGTC CACCGTCCTGGCCCACGAGGCCGAATGGGTTTTGTATAACGAATTCGTTCTCACAACCAAGAACTACATCCGTAC TGTCACTGCCGTCAAGCCAGAATGGCTTTTGGTATGTTCCCCATTCCTGTCTTATAACCAGTAGATTTACTAACT GTTGTCCAGGATATCGCCCCTACATACTACGATATCAACAGCTTCCCCAAGGGTGACATCCGCTCCGCCCTTACT CGGGCTGCTGATCGCCTCGCTCGCAAGGAGAAGATGCGCGCCGAGAAGCGTCGATAG

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences