© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1722.t1 |
| Gene name | |
| Location | scaffold_02:683572..686092 |
| Strand | + |
| Gene length (bp) | 2520 |
| Transcript length (bp) | 2196 |
| Coding sequence length (bp) | 2196 |
| Protein length (aa) | 732 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13424 | TPR_12 | Tetratricopeptide repeat | 2.3E-11 | 427 | 496 |
| PF13374 | TPR_10 | Tetratricopeptide repeat | 8.6E-04 | 432 | 465 |
| PF07819 | PGAP1 | PGAP1-like protein | 1.1E-05 | 79 | 217 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.18 | 1.04 | 5.32 |
| 5d_25C | Five days - 25 degrees Celsius | 12.39 | 6.16 | 18.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.96 | 9.85 | 26.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 35.16 | 21.10 | 49.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.87 | 1.39 | 6.34 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.26 | 16.11 | 38.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.679871 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.176901 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.073139 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.292842 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1722.t1 MDTGEYEFPFLQEVFSPRESHKIDFVFVHGLNPSGRNDHPFQTWTHSNGKFWPRDFLAEDIPYARVFVYGYNSSI THPQTMSTASIKDHANTLLNLLDMERGPQMGSVPPKVIFIGHSLGGLVIKQALLNAKEDPKYTSIRSATSGLVFF GTPHRGAKAVELGKIAARVARFVSKGHASNDLLNCLEFNSLFTRQMTDRFRHQLEDYRVVSFIEGKEVQIGGVGP ASISHLVVDEESAVLGLSGLRETQLKLDADHSQMCKVSSRGPMYRLIKGNIKQLVDQALLSEQGFIPPSIPSSTA SSPPPVPPRLHSNSSTPYHGQGRPSPSTQRVTGMIFNALDNDPRSVRSAELKNRARWDEARTVEYEIFQEHLRSL GPDHFSTLSVAYNLAEVEMESGYLDKANEWCHWVSGNAQRVFGTKHPLALKTESLTAEVLCQQGKYQEAESVCAN VLARQQMTIGEDHLDTCDTRRRLGMTYNGLGRRENAVMTAEKLTDTLKRLLGETHIRVFVIALDALEYIVSNHSG NENTLIVMRFQPDVQQAVGISLQVYQELRNALGHGHPVTIRALCLHGRAQNFMQQSIEASETLRRALASAEETLG PDHPLTLEIVGNIGIMYAAQNSYAQGSLTNSPAEAFPWLIRYLNWVEQRKGKNNHEAQATLELLASLHFNAREYE PAQNYYERLVANIRGADSAMTERVNTRLQLCRANTMYTRRGLGSGLGGFLSSLQRY* |
| Coding | >Pro_DTO377G3_2|g1722.t1 ATGGATACGGGGGAGTATGAGTTTCCCTTCTTGCAGGAGGTCTTCTCTCCTCGTGAATCGCACAAGATCGATTTT GTTTTCGTCCATGGCCTGAACCCAAGCGGTCGCAATGACCATCCTTTCCAGACATGGACGCATAGCAATGGCAAG TTTTGGCCGAGGGACTTCCTGGCCGAGGACATACCATATGCGCGCGTCTTTGTTTATGGATACAATTCAAGCATC ACCCATCCACAGACCATGTCTACGGCTAGCATCAAGGACCATGCGAATACGCTGTTGAATTTATTGGACATGGAA CGCGGCCCTCAGATGGGATCTGTTCCACCGAAAGTGATATTTATCGGTCATAGTTTGGGAGGATTAGTGATCAAA CAGGCACTGCTCAATGCTAAAGAAGATCCAAAATATACCTCTATTCGTTCGGCAACTTCTGGTCTTGTCTTCTTC GGTACACCTCATCGTGGCGCGAAAGCTGTGGAACTGGGGAAAATTGCAGCCCGGGTTGCTCGCTTTGTCTCCAAA GGGCATGCCAGCAATGACCTTCTTAACTGCCTGGAGTTCAATTCCCTTTTTACCCGACAGATGACCGATCGATTC CGACATCAACTAGAAGATTATCGTGTTGTTAGCTTTATCGAAGGGAAGGAGGTGCAGATAGGGGGAGTTGGACCA GCATCTATCAGCCATCTTGTGGTTGATGAAGAGTCTGCAGTTCTTGGGTTGTCCGGGTTACGCGAAACTCAACTC AAGCTCGACGCAGATCACTCGCAGATGTGCAAGGTGAGCTCTCGGGGTCCGATGTATCGCTTGATAAAAGGCAAC ATCAAACAACTGGTCGATCAGGCGCTTTTGTCGGAGCAAGGCTTCATTCCCCCATCGATACCTTCAAGTACCGCG TCATCCCCACCGCCAGTCCCACCACGCCTTCATTCAAATAGTAGCACGCCATACCATGGGCAGGGCCGCCCATCT CCTTCGACACAAAGGGTGACAGGAATGATTTTCAACGCTCTGGATAATGACCCACGGTCTGTTCGCTCCGCAGAA CTCAAGAATCGGGCTCGATGGGACGAAGCCCGAACCGTCGAATATGAGATTTTCCAGGAGCACTTGCGCAGCCTT GGTCCGGATCATTTCAGTACACTATCAGTGGCATACAATCTAGCTGAGGTGGAAATGGAGTCCGGCTACCTAGAT AAAGCAAATGAATGGTGTCATTGGGTATCCGGAAATGCCCAACGCGTCTTTGGGACAAAACATCCCCTGGCACTG AAGACGGAAAGTTTGACTGCAGAGGTCTTGTGTCAACAGGGCAAGTACCAAGAGGCCGAGTCGGTCTGCGCCAAC GTGTTGGCCCGTCAGCAAATGACTATCGGCGAAGACCACCTGGACACCTGTGACACTCGGCGCCGACTGGGAATG ACCTACAATGGGCTAGGTCGCCGGGAAAATGCCGTTATGACTGCGGAAAAGCTGACAGACACCCTAAAGCGTCTG CTTGGAGAAACCCACATTCGTGTATTTGTCATTGCGTTGGATGCTTTGGAATACATCGTGAGCAACCATTCTGGG AACGAAAATACCTTAATTGTGATGCGTTTTCAACCCGATGTACAACAAGCAGTGGGTATATCGTTACAGGTCTAC CAAGAGCTTCGGAATGCCTTGGGTCATGGACACCCGGTTACCATTCGCGCTCTCTGTCTCCACGGCCGAGCACAA AACTTTATGCAGCAGAGTATAGAGGCCTCAGAGACCCTGCGCCGGGCTTTGGCCAGTGCCGAAGAAACATTAGGA CCCGATCATCCGCTGACATTAGAAATCGTGGGCAACATTGGCATTATGTACGCTGCGCAAAATAGCTATGCCCAA GGTTCACTCACCAACAGTCCTGCGGAAGCCTTCCCCTGGTTGATACGATATTTGAACTGGGTTGAACAGCGCAAA GGCAAAAACAACCACGAAGCGCAAGCCACTTTGGAGCTTCTGGCCAGTCTACATTTCAACGCTAGAGAGTACGAA CCCGCCCAGAATTACTATGAGCGCCTCGTGGCGAATATTCGCGGGGCCGACTCAGCAATGACCGAGCGCGTCAAC ACTCGGCTTCAACTGTGCCGGGCGAACACCATGTACACCCGTCGGGGCCTGGGATCGGGACTAGGAGGGTTTTTG TCCAGCTTGCAGCGATACTGA |
| Transcript | >Pro_DTO377G3_2|g1722.t1 ATGGATACGGGGGAGTATGAGTTTCCCTTCTTGCAGGAGGTCTTCTCTCCTCGTGAATCGCACAAGATCGATTTT GTTTTCGTCCATGGCCTGAACCCAAGCGGTCGCAATGACCATCCTTTCCAGACATGGACGCATAGCAATGGCAAG TTTTGGCCGAGGGACTTCCTGGCCGAGGACATACCATATGCGCGCGTCTTTGTTTATGGATACAATTCAAGCATC ACCCATCCACAGACCATGTCTACGGCTAGCATCAAGGACCATGCGAATACGCTGTTGAATTTATTGGACATGGAA CGCGGCCCTCAGATGGGATCTGTTCCACCGAAAGTGATATTTATCGGTCATAGTTTGGGAGGATTAGTGATCAAA CAGGCACTGCTCAATGCTAAAGAAGATCCAAAATATACCTCTATTCGTTCGGCAACTTCTGGTCTTGTCTTCTTC GGTACACCTCATCGTGGCGCGAAAGCTGTGGAACTGGGGAAAATTGCAGCCCGGGTTGCTCGCTTTGTCTCCAAA GGGCATGCCAGCAATGACCTTCTTAACTGCCTGGAGTTCAATTCCCTTTTTACCCGACAGATGACCGATCGATTC CGACATCAACTAGAAGATTATCGTGTTGTTAGCTTTATCGAAGGGAAGGAGGTGCAGATAGGGGGAGTTGGACCA GCATCTATCAGCCATCTTGTGGTTGATGAAGAGTCTGCAGTTCTTGGGTTGTCCGGGTTACGCGAAACTCAACTC AAGCTCGACGCAGATCACTCGCAGATGTGCAAGGTGAGCTCTCGGGGTCCGATGTATCGCTTGATAAAAGGCAAC ATCAAACAACTGGTCGATCAGGCGCTTTTGTCGGAGCAAGGCTTCATTCCCCCATCGATACCTTCAAGTACCGCG TCATCCCCACCGCCAGTCCCACCACGCCTTCATTCAAATAGTAGCACGCCATACCATGGGCAGGGCCGCCCATCT CCTTCGACACAAAGGGTGACAGGAATGATTTTCAACGCTCTGGATAATGACCCACGGTCTGTTCGCTCCGCAGAA CTCAAGAATCGGGCTCGATGGGACGAAGCCCGAACCGTCGAATATGAGATTTTCCAGGAGCACTTGCGCAGCCTT GGTCCGGATCATTTCAGTACACTATCAGTGGCATACAATCTAGCTGAGGTGGAAATGGAGTCCGGCTACCTAGAT AAAGCAAATGAATGGTGTCATTGGGTATCCGGAAATGCCCAACGCGTCTTTGGGACAAAACATCCCCTGGCACTG AAGACGGAAAGTTTGACTGCAGAGGTCTTGTGTCAACAGGGCAAGTACCAAGAGGCCGAGTCGGTCTGCGCCAAC GTGTTGGCCCGTCAGCAAATGACTATCGGCGAAGACCACCTGGACACCTGTGACACTCGGCGCCGACTGGGAATG ACCTACAATGGGCTAGGTCGCCGGGAAAATGCCGTTATGACTGCGGAAAAGCTGACAGACACCCTAAAGCGTCTG CTTGGAGAAACCCACATTCGTGTATTTGTCATTGCGTTGGATGCTTTGGAATACATCGTGAGCAACCATTCTGGG AACGAAAATACCTTAATTGTGATGCGTTTTCAACCCGATGTACAACAAGCAGTGGGTATATCGTTACAGGTCTAC CAAGAGCTTCGGAATGCCTTGGGTCATGGACACCCGGTTACCATTCGCGCTCTCTGTCTCCACGGCCGAGCACAA AACTTTATGCAGCAGAGTATAGAGGCCTCAGAGACCCTGCGCCGGGCTTTGGCCAGTGCCGAAGAAACATTAGGA CCCGATCATCCGCTGACATTAGAAATCGTGGGCAACATTGGCATTATGTACGCTGCGCAAAATAGCTATGCCCAA GGTTCACTCACCAACAGTCCTGCGGAAGCCTTCCCCTGGTTGATACGATATTTGAACTGGGTTGAACAGCGCAAA GGCAAAAACAACCACGAAGCGCAAGCCACTTTGGAGCTTCTGGCCAGTCTACATTTCAACGCTAGAGAGTACGAA CCCGCCCAGAATTACTATGAGCGCCTCGTGGCGAATATTCGCGGGGCCGACTCAGCAATGACCGAGCGCGTCAAC ACTCGGCTTCAACTGTGCCGGGCGAACACCATGTACACCCGTCGGGGCCTGGGATCGGGACTAGGAGGGTTTTTG TCCAGCTTGCAGCGATACTGA |
| Gene | >Pro_DTO377G3_2|g1722.t1 ATGGTAAGGCTTGGGTTCTATCTATACAGATCTATGGCCAAGCACAACTCTAAGTGAAGTCTAGGATACGGGGGA GTATGAGTTTCCCTTCTTGCAGGAGGTCTTCTCTCCTCGTGAATCGCACAAGATCGAGTATGAATACTAGGGCCC TATATTTTATACGGAAATTATTTCTAAGACCTGTTCTTTAGTTTTGTTTTCGTCCATGGCCTGAACCCAAGCGGT CGCAATGACCATCCTTTCCAGACATGGACGCATAGCAATGGCAAGTTTTGGCCGAGGGACTTCCTGGCCGAGGAC ATACCATATGCGCGCGTCTTTGTTTATGGATACAATTCAAGCATCACCCATCCACAGACCATGTCTACGGCTAGC ATCAAGGACCATGCGAATACGCTGTTGAATTTATTGGACATGGAACGCGGCCCTCAGATGGTAAATCGTGGGACC CAACAAGCTTCATTTGAATAATCAATTAACGTATCACAGGGATCTGTTCCACCGAAAGTGATATTTATCGGTCAT AGTTTGGGAGGATTAGTGATCAAACAGGTCAGATATATATCCCATGACCTTTTCCTATGGCATCTTCCTGACAGT CTATGAATCAACGGTATAGGCACTGCTCAATGCTAAAGAAGATCCAAAATATACCTCTATTCGTTCGGCAACTTC TGGTCTTGTCTTCTTCGGTACACCTCATCGTGGCGCGAAAGCTGTGGAACTGGGGAAAATTGCAGCCCGGGTTGC TCGCTTTGTCTCCAAAGGGCATGCCAGCAATGACCTTCTTAACTGCCTGGAGTTCAATTCCCTTTTTACCCGACA GATGACCGATCGATTCCGACATCAACTAGAAGATTATCGTGTTGTTAGCTTTATCGAAGGGAAGGAGGTGCAGAT AGGGGGAGTTGGACCAGCATCTATCAGCCATGTAAGCAGATTTTCCTTCACTAATTATGTGTTCCCCCGGTCCCC GTATACTTTTGTCCTGGAAGAGTGACTGATATTGAAAAGCTTGTGGTTGATGAAGAGTCTGCAGTTCTTGGGTTG TCCGGGTTACGCGAAACTCAACTCAAGCTCGACGCAGATCACTCGCAGATGTGCAAGGTGAGCTCTCGGGGTCCG ATGTATCGCTTGATAAAAGGCAACATCAAACAACTGGTCGATCAGGCGCTTTTGTCGGAGCAAGGCTTCATTCCC CCATCGATACCTTCAAGTACCGCGTCATCCCCACCGCCAGTCCCACCACGCCTTCATTCAAATAGTAGCACGCCA TACCATGGGCAGGGCCGCCCATCTCCTTCGACACAAAGGGTGACAGGAATGATTTTCAACGCTCTGGATAATGAC CCACGGTCTGTTCGCTCCGCAGAACTCAAGAATCGGGCTCGATGGGACGAAGCCCGAACCGTCGAATATGAGATT TTCCAGGAGCACTTGCGCAGCCTTGGTCCGGATCATTTCAGTACACTATCAGTGGCATACAATCTAGCTGAGGTG GAAATGGAGTCCGGCTACCTAGATAAAGCAAATGAATGGTGTCATTGGGTATCCGGAAATGCCCAACGCGTCTTT GGGACAAAACATCCCCTGGCACTGAAGACGGAAAGTTTGACTGCAGAGGTCTTGTGTCAACAGGGCAAGTACCAA GAGGCCGAGTCGGTCTGCGCCAACGTGTTGGCCCGTCAGCAAATGACTATCGGCGAAGACCACCTGGACACCTGT GACACTCGGCGCCGACTGGGAATGACCTACAATGGGCTAGGTCGCCGGGAAAATGCCGTTATGACTGCGGAAAAG CTGACAGACACCCTAAAGCGTCTGCTTGGAGAAACCCACATTCGTGTATTTGTCATTGCGTTGGATGCTTTGGAA TACATCGTGAGCAACCATTCTGGGAACGAAAATACCTTAATTGTGATGCGTTTTCAACCCGATGTACAACAAGCA GTGGGTATATCGTTACAGGTCTACCAAGAGCTTCGGAATGCCTTGGGTCATGGACACCCGGTTACCATTCGCGCT CTCTGTCTCCACGGCCGAGCACAAAACTTTATGCAGCAGAGTATAGAGGCCTCAGAGACCCTGCGCCGGGCTTTG GCCAGTGCCGAAGAAACATTAGGACCCGATCATCCGCTGACATTAGAAATCGTGGGCAACATTGGCATTATGTAC GCTGCGCAAAATAGCTATGCCCAAGGTTCACTCACCAACAGTCCTGCGGAAGCCTTCCCCTGGTTGATACGATAT TTGAACTGGGTTGAACAGCGCAAAGGCAAAAACAACCACGAAGCGCAAGCCACTTTGGAGCTTCTGGCCAGTCTA CATTTCAACGCTAGAGAGTACGAACCCGCCCAGAATTACTATGAGCGCCTCGTGGCGAATATTCGCGGGGCCGAC TCAGCAATGACCGAGCGCGTCAACACTCGGCTTCAACTGTGCCGGGCGAACACCATGTACACCCGTCGGGGCCTG GGATCGGGACTAGGAGGGTTTTTGTCCAGCTTGCAGCGATACTGA |