© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1720.t1 |
| Gene name | |
| Location | scaffold_02:680066..681213 |
| Strand | + |
| Gene length (bp) | 1147 |
| Transcript length (bp) | 963 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04616 | Glyco_hydro_43 | Glycosyl hydrolases family 43 | 2.0E-36 | 31 | 318 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.48 | 1.71 | 11.25 |
| 5d_25C | Five days - 25 degrees Celsius | 1.81 | 0.03 | 3.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.84 | 0.14 | 3.55 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.48 | 0.00 | 2.96 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.62 | 0.00 | 1.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.62 | 0.33 | 4.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.012609 | yes |
| 3d_25C | 7d_25C | 0.004840 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.044784 | yes |
| 3d_25C | 10d_25C | 0.004045 | yes |
| 5d_25C | 7d_25C | 0.983578 | no |
| 5d_25C | 7d_15C | 0.090767 | no |
| 5d_25C | 7d_30C | 0.562940 | no |
| 5d_25C | 10d_25C | 0.793415 | no |
| 7d_25C | 7d_15C | 0.079853 | no |
| 7d_25C | 7d_30C | 0.559702 | no |
| 7d_25C | 10d_25C | 0.757227 | no |
| 7d_15C | 7d_30C | 0.028409 | yes |
| 7d_15C | 10d_25C | 0.189892 | no |
| 7d_30C | 10d_25C | 0.319079 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1720.t1 MHFGNIIKPVLFAALVHGYANPGSCSGACNVHDPSLIQRSSDSRYFRFSTGNKISYASASSINGPWTTIGSILPS GSSIDLAGNDDLWAPDAQLVNGLYYVYYSVSTFGSQNSALGLATSATMDLGSWTDHGATGIASSSAKAYNAIDGN LFNAGGTYYMNFGSFWHDIYQAPMNSDATKVASSSYNLAYDSSGTHAVEGSYMYKYGNYYYLFYSAGICCGYDTS RPASGAEYKIKVCRSTSPTSGFVDASGTACTSGGGTVVLESHGTVYGPGGQGVFTDPSLGPVLYYHYVDTTVGYA DSQKLFGWNQIDFSSGWPVV* |
| Coding | >Pro_DTO377G3_2|g1720.t1 ATGCATTTTGGTAATATCATCAAGCCAGTGCTTTTCGCGGCCCTCGTGCACGGATATGCAAACCCTGGCAGTTGT TCAGGGGCGTGCAATGTGCACGACCCGTCGTTGATACAAAGATCATCGGACAGTCGTTATTTCCGATTTTCCACT GGCAACAAAATTTCTTATGCCAGCGCCTCATCTATCAACGGCCCATGGACTACGATTGGGTCCATCCTGCCTAGT GGGTCTTCTATCGATCTCGCCGGAAATGATGACCTATGGGCTCCCGATGCGCAGCTTGTGAATGGTCTTTACTAT GTTTATTACTCTGTGTCGACGTTTGGTTCACAGAATTCAGCCCTTGGACTAGCCACATCTGCAACCATGGATTTG GGCTCCTGGACTGACCATGGAGCAACTGGTATTGCTTCGTCATCTGCCAAGGCATATAATGCTATTGATGGCAAT TTGTTCAATGCTGGTGGTACTTACTATATGAATTTCGGCTCCTTTTGGCACGATATCTACCAGGCTCCAATGAAC TCGGATGCCACTAAAGTCGCGTCTTCGTCCTACAATCTGGCTTATGACTCCTCTGGAACACACGCTGTGGAGGGG TCCTACATGTATAAGTATGGAAACTACTACTATCTCTTTTACTCTGCCGGCATCTGTTGTGGCTACGACACATCT CGCCCTGCCAGCGGAGCAGAATACAAGATCAAGGTCTGCCGATCGACCTCGCCTACTAGCGGATTTGTTGATGCA TCGGGCACTGCTTGCACAAGCGGGGGAGGCACAGTTGTTCTAGAAAGCCACGGGACAGTCTATGGTCCTGGTGGA CAGGGCGTGTTTACCGATCCTAGCCTCGGCCCAGTGCTATACTACCACTATGTTGACACTACTGTAGGCTATGCC GATAGTCAGAAACTCTTTGGGTGGAATCAGATCGATTTCTCAAGCGGATGGCCAGTGGTTTAA |
| Transcript | >Pro_DTO377G3_2|g1720.t1 ATGCATTTTGGTAATATCATCAAGCCAGTGCTTTTCGCGGCCCTCGTGCACGGATATGCAAACCCTGGCAGTTGT TCAGGGGCGTGCAATGTGCACGACCCGTCGTTGATACAAAGATCATCGGACAGTCGTTATTTCCGATTTTCCACT GGCAACAAAATTTCTTATGCCAGCGCCTCATCTATCAACGGCCCATGGACTACGATTGGGTCCATCCTGCCTAGT GGGTCTTCTATCGATCTCGCCGGAAATGATGACCTATGGGCTCCCGATGCGCAGCTTGTGAATGGTCTTTACTAT GTTTATTACTCTGTGTCGACGTTTGGTTCACAGAATTCAGCCCTTGGACTAGCCACATCTGCAACCATGGATTTG GGCTCCTGGACTGACCATGGAGCAACTGGTATTGCTTCGTCATCTGCCAAGGCATATAATGCTATTGATGGCAAT TTGTTCAATGCTGGTGGTACTTACTATATGAATTTCGGCTCCTTTTGGCACGATATCTACCAGGCTCCAATGAAC TCGGATGCCACTAAAGTCGCGTCTTCGTCCTACAATCTGGCTTATGACTCCTCTGGAACACACGCTGTGGAGGGG TCCTACATGTATAAGTATGGAAACTACTACTATCTCTTTTACTCTGCCGGCATCTGTTGTGGCTACGACACATCT CGCCCTGCCAGCGGAGCAGAATACAAGATCAAGGTCTGCCGATCGACCTCGCCTACTAGCGGATTTGTTGATGCA TCGGGCACTGCTTGCACAAGCGGGGGAGGCACAGTTGTTCTAGAAAGCCACGGGACAGTCTATGGTCCTGGTGGA CAGGGCGTGTTTACCGATCCTAGCCTCGGCCCAGTGCTATACTACCACTATGTTGACACTACTGTAGGCTATGCC GATAGTCAGAAACTCTTTGGGTGGAATCAGATCGATTTCTCAAGCGGATGGCCAGTGGTTTAA |
| Gene | >Pro_DTO377G3_2|g1720.t1 ATGCATTTTGGTAATATCATCAAGCCAGTGCTTTTCGCGGCCCTCGTGCACGGATATGCAAACCCTGGCAGTTGT TCAGGGGCGTGCAATGTGCACGACCCGTCGTTGATACAAAGATCATCGGACAGTCGTTATTTCCGATTTTCCACT GGCAACAAAATTTCTTATGCCAGCGCCTCATCTATCAACGGCCCATGGACTACGATTGGGTCCATCCTGCCTAGT GGGTCTTCTATCGATCTCGCCGGAAATGATGACCTATGGGTAAGCATTACCCTTTCCGCAAAGCTTGTCCGCAAG TGATCAACATATTGGGTACTGACTTCCATGCTAGGCTCCCGATGCGCAGCTTGTGAATGGTCTTTACTATGTTTA TTACTCTGTGTCGACGTTTGGTTCACAGAATTCAGCCCTTGGACTAGCCACATCTGCAACCATGGATTTGGGCTC CTGGACTGACCATGGAGCAACTGGTATTGCTTCGTCATCTGCCAAGGCATATAATGCTATTGATGGCAATTTGTT CAATGCTGGTGGTACTTACTATATGAATTTCGGCTCCTTTTGGCACGATATCTACCAGGCTCCAATGAACTCGGA TGCCACTAAAGTCGCGTCTTCGTCCTACAATCTGGCTTATGACTCCTCTGGAACACACGCTGTGGAGGGGTCCTA CATGTATAAGTATGGAAACTACTACTATCTCTTTTACTCTGCCGGCATCTGTTGTGGCTACGACACATCTCGCCC TGCCAGCGGAGCAGAATACAAGATCAAGGTCTGCCGATCGACCTCGCCTACTAGCGGATTTGTATGTTACCCAAT TTCCCGCTTTAGACACTCGCCCTAACTCTTTTCCTATCCAAGGTTGATGCATCGGGCACTGCTTGCACAAGCGGG GGAGGCACAGTTGTTCTAGAAAGCCACGGGACAGTCTATGGTCCTGGTGGACAGTAAGTTTTTGATTTCGATCGT ATTCCAAACTCGAATATTAACCTGACCTTGCTCCAGGGGCGTGTTTACCGATCCTAGCCTCGGCCCAGTGCTATA CTACCACTATGTTGACACTACTGTAGGCTATGCCGATAGTCAGAAACTCTTTGGGTGGAATCAGATCGATTTCTC AAGCGGATGGCCAGTGGTTTAA |