© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1707.t1 |
| Gene name | |
| Location | scaffold_02:649991..652253 |
| Strand | - |
| Gene length (bp) | 2262 |
| Transcript length (bp) | 2088 |
| Coding sequence length (bp) | 2088 |
| Protein length (aa) | 696 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01756 | ACOX | Acyl-CoA oxidase | 3.6E-46 | 511 | 679 |
| PF14749 | Acyl-CoA_ox_N | Acyl-coenzyme A oxidase N-terminal | 5.4E-27 | 33 | 147 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 3.8E-11 | 149 | 259 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005777 | peroxisome | Yes |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0006635 | fatty acid beta-oxidation | Yes |
| GO:0003997 | acyl-CoA oxidase activity | Yes |
| GO:0042579 | microbody | No |
| GO:0016042 | lipid catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006631 | fatty acid metabolic process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0009056 | catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044282 | small molecule catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016054 | organic acid catabolic process | No |
| GO:0019395 | fatty acid oxidation | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0030258 | lipid modification | No |
| GO:0034440 | lipid oxidation | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0072329 | monocarboxylic acid catabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046395 | carboxylic acid catabolic process | No |
| GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | No |
| GO:0044242 | cellular lipid catabolic process | No |
| GO:0032787 | monocarboxylic acid metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0009062 | fatty acid catabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 66.17 | 40.60 | 91.74 |
| 5d_25C | Five days - 25 degrees Celsius | 54.12 | 33.16 | 75.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 47.75 | 29.04 | 66.46 |
| 10d_25C | Ten days - 25 degrees Celsius | 40.30 | 24.32 | 56.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 43.04 | 26.06 | 60.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 35.91 | 21.42 | 50.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.400246 | no |
| 3d_25C | 7d_25C | 0.132302 | no |
| 3d_25C | 7d_15C | 0.034125 | yes |
| 3d_25C | 7d_30C | 0.001278 | yes |
| 3d_25C | 10d_25C | 0.012303 | yes |
| 5d_25C | 7d_25C | 0.655521 | no |
| 5d_25C | 7d_15C | 0.333990 | no |
| 5d_25C | 7d_30C | 0.049955 | yes |
| 5d_25C | 10d_25C | 0.184643 | no |
| 7d_25C | 7d_15C | 0.716937 | no |
| 7d_25C | 7d_30C | 0.220375 | no |
| 7d_25C | 10d_25C | 0.505017 | no |
| 7d_15C | 7d_30C | 0.480080 | no |
| 7d_15C | 10d_25C | 0.828731 | no |
| 7d_30C | 10d_25C | 0.683366 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 1590 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1707.t1 MPSPPPDWVKALKPAGPQGSELLQQERAQSNVNVERLSELLHTKETLERRASILALLKPEKVFDKSQNHTLGRVE RLQRSLGKAKRLQQLAEEHKWSMEELHAANDLIGEPTPYGLHASMFLVTLREQGTPEQRKLFLERAEKYEIIGCY AQTELGHGSNVRGLETTATWNSDDKTFTINSPTLTSSKWWIGSLGRTANHAVVMAQLFIDGKNYGPHPFIVQVRD LETHQPLDNVYVGDIGPKFGYNTMDNGFLLFNNVKIPHVNMLARFCQVDKETNRYTKPAVPSLVFGTMTWVRANI VLDAGGVLARGVTIATRYCAVRRQFQDRDSDPNAGETQVLNYKMVQVRLLPLLASMYALHFTGRGMMRLYEENQS RMKAASSPDQESRGAGPEQLRAGANLLADLHATSCGLKALASTTAGEGLEVCRRACGGHGYSSYSGIGPAYADYL PTLTWEGDNYMLTQQVAQYLLKSARAVLAGKPADNDTSRILQTYLDRRDKGASFDVLDEDKDIVAAFAWRTAHLT FEALKHRDAEKRSWNSLLVDFWRLSTSHSQYLVVKNFYEAVSSPELSAALDPETKGLLHQLFRLFSLHTLEREAA EFFSSGAVTVRQITLTRTTAVLKLLDAIRPHAVRLVDAWAIPDWHLDSSLGRYDGKVYEDLFRRASEENPVNDLV FDPYPWNSALLKNEPAKSKL* |
| Coding | >Pro_DTO377G3_2|g1707.t1 ATGCCGTCACCTCCTCCTGATTGGGTTAAAGCCCTGAAGCCGGCAGGTCCGCAAGGATCTGAGCTCCTCCAGCAA GAGCGTGCTCAATCGAATGTCAACGTCGAAAGATTATCCGAGTTGCTACACACAAAGGAAACTTTGGAGCGACGA GCGTCCATCCTAGCTCTTTTGAAGCCCGAGAAAGTATTTGATAAGTCTCAGAACCATACTTTGGGCCGCGTAGAG CGGCTCCAGCGATCGCTGGGCAAGGCCAAGCGCCTCCAGCAGCTTGCCGAAGAGCACAAATGGTCGATGGAAGAG CTCCATGCGGCTAATGACTTGATTGGTGAACCTACCCCTTACGGTTTGCACGCTAGTATGTTCCTAGTGACTCTT CGCGAGCAAGGAACTCCTGAGCAGCGCAAGCTGTTCCTTGAACGCGCAGAAAAATACGAGATTATCGGTTGCTAC GCGCAAACAGAGCTGGGCCATGGATCGAACGTGCGCGGTTTGGAAACCACCGCCACCTGGAACTCCGACGATAAG ACATTCACCATCAACTCTCCAACATTGACTTCTTCGAAGTGGTGGATTGGATCTCTCGGTCGCACGGCCAATCAC GCTGTGGTTATGGCCCAGCTTTTTATTGATGGCAAGAACTATGGTCCTCACCCATTCATCGTGCAGGTCCGTGAC CTCGAAACCCATCAACCATTGGATAATGTATATGTGGGCGATATTGGCCCCAAATTTGGCTACAACACTATGGAT AATGGTTTCCTGCTGTTCAACAACGTCAAGATACCCCATGTGAACATGCTGGCCCGCTTCTGTCAGGTCGACAAA GAGACGAACCGCTATACTAAGCCTGCTGTGCCATCTCTTGTCTTTGGTACTATGACCTGGGTGCGCGCCAACATT GTTCTAGATGCCGGTGGTGTTCTGGCTCGCGGTGTGACTATCGCGACCCGTTACTGTGCGGTTCGGAGGCAGTTC CAGGATCGCGATTCGGACCCGAACGCGGGTGAGACCCAAGTACTGAACTATAAGATGGTCCAGGTGCGCTTGCTT CCACTTTTGGCATCTATGTATGCTCTTCATTTCACTGGTCGCGGTATGATGCGTCTGTATGAGGAGAATCAAAGC CGCATGAAGGCAGCCAGTTCGCCCGACCAGGAGTCGCGGGGCGCTGGACCCGAGCAACTCCGTGCCGGTGCGAAC CTCCTGGCGGATCTGCACGCCACCTCATGTGGTCTTAAGGCTCTCGCCAGTACCACTGCCGGTGAGGGTCTGGAG GTCTGCCGCCGCGCCTGTGGTGGTCACGGATACAGCAGCTACAGCGGCATTGGACCGGCTTACGCAGATTATCTG CCCACACTGACTTGGGAAGGTGATAACTATATGTTGACCCAGCAGGTTGCACAATATCTTCTCAAATCTGCCCGT GCCGTCCTGGCCGGTAAGCCGGCTGATAACGACACTAGCCGCATTCTTCAGACATACCTCGACCGTCGCGACAAG GGAGCTTCATTCGATGTGCTCGATGAAGACAAGGACATTGTGGCTGCCTTTGCCTGGCGCACAGCTCATCTGACC TTCGAGGCCCTCAAGCATCGGGATGCTGAGAAGCGCTCCTGGAACAGCCTTTTGGTTGACTTCTGGCGCTTGTCT ACGTCTCATTCTCAGTACCTGGTGGTGAAGAACTTCTACGAGGCGGTTTCCTCCCCTGAACTCTCAGCGGCCTTG GATCCAGAGACCAAGGGCCTCCTGCATCAATTATTCAGACTCTTCTCGCTGCACACTCTAGAGCGTGAAGCCGCC GAGTTCTTCTCTTCCGGTGCGGTTACTGTGCGACAAATTACCTTGACTCGTACTACTGCCGTATTAAAGCTACTC GACGCGATCCGCCCGCACGCTGTCCGATTGGTCGATGCTTGGGCGATTCCCGACTGGCACCTGGACAGCAGCCTG GGTCGCTATGACGGCAAGGTGTACGAGGATCTGTTCCGCCGCGCAAGCGAGGAGAACCCTGTTAACGACTTGGTG TTTGACCCTTACCCATGGAACTCGGCATTGCTCAAGAATGAGCCAGCCAAGAGCAAGCTGTAA |
| Transcript | >Pro_DTO377G3_2|g1707.t1 ATGCCGTCACCTCCTCCTGATTGGGTTAAAGCCCTGAAGCCGGCAGGTCCGCAAGGATCTGAGCTCCTCCAGCAA GAGCGTGCTCAATCGAATGTCAACGTCGAAAGATTATCCGAGTTGCTACACACAAAGGAAACTTTGGAGCGACGA GCGTCCATCCTAGCTCTTTTGAAGCCCGAGAAAGTATTTGATAAGTCTCAGAACCATACTTTGGGCCGCGTAGAG CGGCTCCAGCGATCGCTGGGCAAGGCCAAGCGCCTCCAGCAGCTTGCCGAAGAGCACAAATGGTCGATGGAAGAG CTCCATGCGGCTAATGACTTGATTGGTGAACCTACCCCTTACGGTTTGCACGCTAGTATGTTCCTAGTGACTCTT CGCGAGCAAGGAACTCCTGAGCAGCGCAAGCTGTTCCTTGAACGCGCAGAAAAATACGAGATTATCGGTTGCTAC GCGCAAACAGAGCTGGGCCATGGATCGAACGTGCGCGGTTTGGAAACCACCGCCACCTGGAACTCCGACGATAAG ACATTCACCATCAACTCTCCAACATTGACTTCTTCGAAGTGGTGGATTGGATCTCTCGGTCGCACGGCCAATCAC GCTGTGGTTATGGCCCAGCTTTTTATTGATGGCAAGAACTATGGTCCTCACCCATTCATCGTGCAGGTCCGTGAC CTCGAAACCCATCAACCATTGGATAATGTATATGTGGGCGATATTGGCCCCAAATTTGGCTACAACACTATGGAT AATGGTTTCCTGCTGTTCAACAACGTCAAGATACCCCATGTGAACATGCTGGCCCGCTTCTGTCAGGTCGACAAA GAGACGAACCGCTATACTAAGCCTGCTGTGCCATCTCTTGTCTTTGGTACTATGACCTGGGTGCGCGCCAACATT GTTCTAGATGCCGGTGGTGTTCTGGCTCGCGGTGTGACTATCGCGACCCGTTACTGTGCGGTTCGGAGGCAGTTC CAGGATCGCGATTCGGACCCGAACGCGGGTGAGACCCAAGTACTGAACTATAAGATGGTCCAGGTGCGCTTGCTT CCACTTTTGGCATCTATGTATGCTCTTCATTTCACTGGTCGCGGTATGATGCGTCTGTATGAGGAGAATCAAAGC CGCATGAAGGCAGCCAGTTCGCCCGACCAGGAGTCGCGGGGCGCTGGACCCGAGCAACTCCGTGCCGGTGCGAAC CTCCTGGCGGATCTGCACGCCACCTCATGTGGTCTTAAGGCTCTCGCCAGTACCACTGCCGGTGAGGGTCTGGAG GTCTGCCGCCGCGCCTGTGGTGGTCACGGATACAGCAGCTACAGCGGCATTGGACCGGCTTACGCAGATTATCTG CCCACACTGACTTGGGAAGGTGATAACTATATGTTGACCCAGCAGGTTGCACAATATCTTCTCAAATCTGCCCGT GCCGTCCTGGCCGGTAAGCCGGCTGATAACGACACTAGCCGCATTCTTCAGACATACCTCGACCGTCGCGACAAG GGAGCTTCATTCGATGTGCTCGATGAAGACAAGGACATTGTGGCTGCCTTTGCCTGGCGCACAGCTCATCTGACC TTCGAGGCCCTCAAGCATCGGGATGCTGAGAAGCGCTCCTGGAACAGCCTTTTGGTTGACTTCTGGCGCTTGTCT ACGTCTCATTCTCAGTACCTGGTGGTGAAGAACTTCTACGAGGCGGTTTCCTCCCCTGAACTCTCAGCGGCCTTG GATCCAGAGACCAAGGGCCTCCTGCATCAATTATTCAGACTCTTCTCGCTGCACACTCTAGAGCGTGAAGCCGCC GAGTTCTTCTCTTCCGGTGCGGTTACTGTGCGACAAATTACCTTGACTCGTACTACTGCCGTATTAAAGCTACTC GACGCGATCCGCCCGCACGCTGTCCGATTGGTCGATGCTTGGGCGATTCCCGACTGGCACCTGGACAGCAGCCTG GGTCGCTATGACGGCAAGGTGTACGAGGATCTGTTCCGCCGCGCAAGCGAGGAGAACCCTGTTAACGACTTGGTG TTTGACCCTTACCCATGGAACTCGGCATTGCTCAAGAATGAGCCAGCCAAGAGCAAGCTGTAA |
| Gene | >Pro_DTO377G3_2|g1707.t1 ATGCCGTCACCTCCTCCTGATTGGGTTAAAGCCCTGAAGCCGGCAGGTCCGCAAGGATCTGAGCTCCTCCAGCAA GAGCGTGCTCAATCGAATGTCAACGTCGAAAGATTATCCGAGTTGCTACACACAAAGGAAACTTTGGAGCGACGA GCGTCCATCCTAGCTCTTTTGAAGCCCGAGAAAGTATTTGATAAGTCTCAGAACCATACTTTGGGCCGCGTAGAG CGGCTCCAGCGATCGCTGGGCAAGGCCAAGCGCCTCCAGCAGCTTGCCGAAGAGCACAAATGGTCGATGGAAGAG CTCCATGCGGCTAATGACTTGATTGGTGAACCTACCCCTTACGGTTTGCACGCTAGTATGTTCCTAGTAAGTGAA TTAGACCCTTGTCAATAATCCAACTCTCCAACTAAACTAACCACTTTGGTCGTTATCTAGGTGACTCTTCGCGAG CAAGGAACTCCTGAGCAGCGCAAGCTGTTCCTTGAACGCGCAGAAAAATACGAGATTATCGGTTGCTACGCGCAA ACAGAGCTGGGCCATGGATCGAACGTGCGCGGTTTGGAAACCACCGCCACCTGGAACTCCGACGATAAGACATTC ACCATCAACTCTCCAACATTGACTTCTTCGAAGTGGTGGATTGGATCTCTCGGTCGCACGGCCAATCACGCTGTG GTTATGGCCCAGCTTTTTATTGATGGCAAGAACTATGGTCCTCACCCATTCATCGTGCAGGTCCGTGACCTCGAA ACCCATCAACCATTGGATAATGTATATGTGGGCGATATTGGCCCCAAATTTGGCTACAAGTAAGTCGGCTCTCAT TTTTTGGCCGGTATCAGCACTAATGACTACTTAGCACTATGGATAATGGTTTCCTGCTGTTCAACAACGTCAAGA TACCCCATGTGAACATGCTGGCCCGCTTCTGTCAGGTCGACAAAGAGACGAACCGCTATACTAAGCCTGCTGTGC CATCTCTTGTCTTTGGTACTATGACCTGGGTGCGCGCCAACATTGTTCTAGATGCCGGTGGTGTTCTGGCTCGCG GTGTGACTATCGCGACCCGTTACTGTGCGGTTCGGAGGCAGTTCCAGGATCGCGATTCGGACCCGAACGCGGGTG AGACCCAAGTACTGAACTATAAGATGGTCCAGGTGCGCTTGCTTCCACTTTTGGCATCTATGTATGCTCTTCATT TCACTGGTCGCGGTATGATGCGTCTGTATGAGGAGAATCAAAGCCGCATGAAGGCAGCCAGTTCGCCCGACCAGG AGTCGCGGGGCGCTGGACCCGAGCAACTCCGTGCCGGTGCGAACCTCCTGGCGGATCTGCACGCCACCTCATGTG GTCTTAAGGCTCTCGCCAGTACCACTGCCGGTGAGGGTCTGGAGGTCTGCCGCCGCGCCTGTGGTGGTCACGGAT ACAGCAGCTACAGCGGCATTGGACCGGCTTACGCAGATTATCTGCCCACACTGACTTGGGAAGGTGATAACTATA TGTTGACCCAGCAGGTTGCACAATATGTATGTCGCAGTTCTTTCTTCCATTCTATTTACTCCTAACTGACCGTAT TAATAGCTTCTCAAATCTGCCCGTGCCGTCCTGGCCGGTAAGCCGGCTGATAACGACACTAGCCGCATTCTTCAG ACATACCTCGACCGTCGCGACAAGGGAGCTTCATTCGATGTGCTCGATGAAGACAAGGACATTGTGGCTGCCTTT GCCTGGCGCACAGCTCATCTGACCTTCGAGGCCCTCAAGCATCGGGATGCTGAGAAGCGCTCCTGGAACAGCCTT TTGGTTGACTTCTGGCGCTTGTCTACGTCTCATTCTCAGTACCTGGTGGTGAAGAACTTCTACGAGGCGGTTTCC TCCCCTGAACTCTCAGCGGCCTTGGATCCAGAGACCAAGGGCCTCCTGCATCAATTATTCAGACTCTTCTCGCTG CACACTCTAGAGCGTGAAGCCGCCGAGTTCTTCTCTTCCGGTGCGGTTACTGTGCGACAAATTACCTTGACTCGT ACTACTGCCGTATTAAAGCTACTCGACGCGATCCGCCCGCACGCTGTCCGATTGGTCGATGCTTGGGCGATTCCC GACTGGCACCTGGACAGCAGCCTGGGTCGCTATGACGGCAAGGTGTACGAGGATCTGTTCCGCCGCGCAAGCGAG GAGAACCCTGTTAACGACTTGGTGTTTGACCCTTACCCATGGAACTCGGCATTGCTCAAGAATGAGCCAGCCAAG AGCAAGCTGTAA |