Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g1707.t1
Gene name
Location	scaffold_02:649991..652253
Strand	-
Gene length (bp)	2262
Transcript length (bp)	2088
Coding sequence length (bp)	2088
Protein length (aa)	696

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01756	ACOX	Acyl-CoA oxidase	3.6E-46	511	679
PF14749	Acyl-CoA_ox_N	Acyl-coenzyme A oxidase N-terminal	5.4E-27	33	147
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	3.8E-11	149	259

GO

GO Term	Description	Terminal node
GO:0005777	peroxisome	Yes
GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	Yes
GO:0006635	fatty acid beta-oxidation	Yes
GO:0003997	acyl-CoA oxidase activity	Yes
GO:0042579	microbody	No
GO:0016042	lipid catabolic process	No
GO:0003674	molecular_function	No
GO:0044248	cellular catabolic process	No
GO:0043229	intracellular organelle	No
GO:0006631	fatty acid metabolic process	No
GO:0043227	membrane-bounded organelle	No
GO:0009056	catabolic process	No
GO:0008152	metabolic process	No
GO:0044282	small molecule catabolic process	No
GO:0003824	catalytic activity	No
GO:0005575	cellular_component	No
GO:0006082	organic acid metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0008150	biological_process	No
GO:0016054	organic acid catabolic process	No
GO:0019395	fatty acid oxidation	No
GO:0019752	carboxylic acid metabolic process	No
GO:0006629	lipid metabolic process	No
GO:1901575	organic substance catabolic process	No
GO:0044238	primary metabolic process	No
GO:0009987	cellular process	No
GO:0044237	cellular metabolic process	No
GO:0043226	organelle	No
GO:0030258	lipid modification	No
GO:0034440	lipid oxidation	No
GO:0043436	oxoacid metabolic process	No
GO:0110165	cellular anatomical entity	No
GO:0072329	monocarboxylic acid catabolic process	No
GO:0044281	small molecule metabolic process	No
GO:0016491	oxidoreductase activity	No
GO:0046395	carboxylic acid catabolic process	No
GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	No
GO:0044242	cellular lipid catabolic process	No
GO:0032787	monocarboxylic acid metabolic process	No
GO:0044255	cellular lipid metabolic process	No
GO:0009062	fatty acid catabolic process	No
GO:0043231	intracellular membrane-bounded organelle	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 13	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	66.17	40.60	91.74
5d_25C	Five days - 25 degrees Celsius	54.12	33.16	75.08
7d_25C	Seven days - 25 degrees Celsius	47.75	29.04	66.46
10d_25C	Ten days - 25 degrees Celsius	40.30	24.32	56.27
7d_15C	Seven days - 15 degrees Celsius	43.04	26.06	60.02
7d_30C	Seven days - 30 degrees Celsius	35.91	21.42	50.40

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.400246	no
3d_25C	7d_25C	0.132302	no
3d_25C	7d_15C	0.034125	yes
3d_25C	7d_30C	0.001278	yes
3d_25C	10d_25C	0.012303	yes
5d_25C	7d_25C	0.655521	no
5d_25C	7d_15C	0.333990	no
5d_25C	7d_30C	0.049955	yes
5d_25C	10d_25C	0.184643	no
7d_25C	7d_15C	0.716937	no
7d_25C	7d_30C	0.220375	no
7d_25C	10d_25C	0.505017	no
7d_15C	7d_30C	0.480080	no
7d_15C	10d_25C	0.828731	no
7d_30C	10d_25C	0.683366	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g1707.t1 MPSPPPDWVKALKPAGPQGSELLQQERAQSNVNVERLSELLHTKETLERRASILALLKPEKVFDKSQNHTLGRVE RLQRSLGKAKRLQQLAEEHKWSMEELHAANDLIGEPTPYGLHASMFLVTLREQGTPEQRKLFLERAEKYEIIGCY AQTELGHGSNVRGLETTATWNSDDKTFTINSPTLTSSKWWIGSLGRTANHAVVMAQLFIDGKNYGPHPFIVQVRD LETHQPLDNVYVGDIGPKFGYNTMDNGFLLFNNVKIPHVNMLARFCQVDKETNRYTKPAVPSLVFGTMTWVRANI VLDAGGVLARGVTIATRYCAVRRQFQDRDSDPNAGETQVLNYKMVQVRLLPLLASMYALHFTGRGMMRLYEENQS RMKAASSPDQESRGAGPEQLRAGANLLADLHATSCGLKALASTTAGEGLEVCRRACGGHGYSSYSGIGPAYADYL PTLTWEGDNYMLTQQVAQYLLKSARAVLAGKPADNDTSRILQTYLDRRDKGASFDVLDEDKDIVAAFAWRTAHLT FEALKHRDAEKRSWNSLLVDFWRLSTSHSQYLVVKNFYEAVSSPELSAALDPETKGLLHQLFRLFSLHTLEREAA EFFSSGAVTVRQITLTRTTAVLKLLDAIRPHAVRLVDAWAIPDWHLDSSLGRYDGKVYEDLFRRASEENPVNDLV FDPYPWNSALLKNEPAKSKL*
Coding	>Pro_DTO377G3_2\|g1707.t1 ATGCCGTCACCTCCTCCTGATTGGGTTAAAGCCCTGAAGCCGGCAGGTCCGCAAGGATCTGAGCTCCTCCAGCAA GAGCGTGCTCAATCGAATGTCAACGTCGAAAGATTATCCGAGTTGCTACACACAAAGGAAACTTTGGAGCGACGA GCGTCCATCCTAGCTCTTTTGAAGCCCGAGAAAGTATTTGATAAGTCTCAGAACCATACTTTGGGCCGCGTAGAG CGGCTCCAGCGATCGCTGGGCAAGGCCAAGCGCCTCCAGCAGCTTGCCGAAGAGCACAAATGGTCGATGGAAGAG CTCCATGCGGCTAATGACTTGATTGGTGAACCTACCCCTTACGGTTTGCACGCTAGTATGTTCCTAGTGACTCTT CGCGAGCAAGGAACTCCTGAGCAGCGCAAGCTGTTCCTTGAACGCGCAGAAAAATACGAGATTATCGGTTGCTAC GCGCAAACAGAGCTGGGCCATGGATCGAACGTGCGCGGTTTGGAAACCACCGCCACCTGGAACTCCGACGATAAG ACATTCACCATCAACTCTCCAACATTGACTTCTTCGAAGTGGTGGATTGGATCTCTCGGTCGCACGGCCAATCAC GCTGTGGTTATGGCCCAGCTTTTTATTGATGGCAAGAACTATGGTCCTCACCCATTCATCGTGCAGGTCCGTGAC CTCGAAACCCATCAACCATTGGATAATGTATATGTGGGCGATATTGGCCCCAAATTTGGCTACAACACTATGGAT AATGGTTTCCTGCTGTTCAACAACGTCAAGATACCCCATGTGAACATGCTGGCCCGCTTCTGTCAGGTCGACAAA GAGACGAACCGCTATACTAAGCCTGCTGTGCCATCTCTTGTCTTTGGTACTATGACCTGGGTGCGCGCCAACATT GTTCTAGATGCCGGTGGTGTTCTGGCTCGCGGTGTGACTATCGCGACCCGTTACTGTGCGGTTCGGAGGCAGTTC CAGGATCGCGATTCGGACCCGAACGCGGGTGAGACCCAAGTACTGAACTATAAGATGGTCCAGGTGCGCTTGCTT CCACTTTTGGCATCTATGTATGCTCTTCATTTCACTGGTCGCGGTATGATGCGTCTGTATGAGGAGAATCAAAGC CGCATGAAGGCAGCCAGTTCGCCCGACCAGGAGTCGCGGGGCGCTGGACCCGAGCAACTCCGTGCCGGTGCGAAC CTCCTGGCGGATCTGCACGCCACCTCATGTGGTCTTAAGGCTCTCGCCAGTACCACTGCCGGTGAGGGTCTGGAG GTCTGCCGCCGCGCCTGTGGTGGTCACGGATACAGCAGCTACAGCGGCATTGGACCGGCTTACGCAGATTATCTG CCCACACTGACTTGGGAAGGTGATAACTATATGTTGACCCAGCAGGTTGCACAATATCTTCTCAAATCTGCCCGT GCCGTCCTGGCCGGTAAGCCGGCTGATAACGACACTAGCCGCATTCTTCAGACATACCTCGACCGTCGCGACAAG GGAGCTTCATTCGATGTGCTCGATGAAGACAAGGACATTGTGGCTGCCTTTGCCTGGCGCACAGCTCATCTGACC TTCGAGGCCCTCAAGCATCGGGATGCTGAGAAGCGCTCCTGGAACAGCCTTTTGGTTGACTTCTGGCGCTTGTCT ACGTCTCATTCTCAGTACCTGGTGGTGAAGAACTTCTACGAGGCGGTTTCCTCCCCTGAACTCTCAGCGGCCTTG GATCCAGAGACCAAGGGCCTCCTGCATCAATTATTCAGACTCTTCTCGCTGCACACTCTAGAGCGTGAAGCCGCC GAGTTCTTCTCTTCCGGTGCGGTTACTGTGCGACAAATTACCTTGACTCGTACTACTGCCGTATTAAAGCTACTC GACGCGATCCGCCCGCACGCTGTCCGATTGGTCGATGCTTGGGCGATTCCCGACTGGCACCTGGACAGCAGCCTG GGTCGCTATGACGGCAAGGTGTACGAGGATCTGTTCCGCCGCGCAAGCGAGGAGAACCCTGTTAACGACTTGGTG TTTGACCCTTACCCATGGAACTCGGCATTGCTCAAGAATGAGCCAGCCAAGAGCAAGCTGTAA
Transcript	>Pro_DTO377G3_2\|g1707.t1 ATGCCGTCACCTCCTCCTGATTGGGTTAAAGCCCTGAAGCCGGCAGGTCCGCAAGGATCTGAGCTCCTCCAGCAA GAGCGTGCTCAATCGAATGTCAACGTCGAAAGATTATCCGAGTTGCTACACACAAAGGAAACTTTGGAGCGACGA GCGTCCATCCTAGCTCTTTTGAAGCCCGAGAAAGTATTTGATAAGTCTCAGAACCATACTTTGGGCCGCGTAGAG CGGCTCCAGCGATCGCTGGGCAAGGCCAAGCGCCTCCAGCAGCTTGCCGAAGAGCACAAATGGTCGATGGAAGAG CTCCATGCGGCTAATGACTTGATTGGTGAACCTACCCCTTACGGTTTGCACGCTAGTATGTTCCTAGTGACTCTT CGCGAGCAAGGAACTCCTGAGCAGCGCAAGCTGTTCCTTGAACGCGCAGAAAAATACGAGATTATCGGTTGCTAC GCGCAAACAGAGCTGGGCCATGGATCGAACGTGCGCGGTTTGGAAACCACCGCCACCTGGAACTCCGACGATAAG ACATTCACCATCAACTCTCCAACATTGACTTCTTCGAAGTGGTGGATTGGATCTCTCGGTCGCACGGCCAATCAC GCTGTGGTTATGGCCCAGCTTTTTATTGATGGCAAGAACTATGGTCCTCACCCATTCATCGTGCAGGTCCGTGAC CTCGAAACCCATCAACCATTGGATAATGTATATGTGGGCGATATTGGCCCCAAATTTGGCTACAACACTATGGAT AATGGTTTCCTGCTGTTCAACAACGTCAAGATACCCCATGTGAACATGCTGGCCCGCTTCTGTCAGGTCGACAAA GAGACGAACCGCTATACTAAGCCTGCTGTGCCATCTCTTGTCTTTGGTACTATGACCTGGGTGCGCGCCAACATT GTTCTAGATGCCGGTGGTGTTCTGGCTCGCGGTGTGACTATCGCGACCCGTTACTGTGCGGTTCGGAGGCAGTTC CAGGATCGCGATTCGGACCCGAACGCGGGTGAGACCCAAGTACTGAACTATAAGATGGTCCAGGTGCGCTTGCTT CCACTTTTGGCATCTATGTATGCTCTTCATTTCACTGGTCGCGGTATGATGCGTCTGTATGAGGAGAATCAAAGC CGCATGAAGGCAGCCAGTTCGCCCGACCAGGAGTCGCGGGGCGCTGGACCCGAGCAACTCCGTGCCGGTGCGAAC CTCCTGGCGGATCTGCACGCCACCTCATGTGGTCTTAAGGCTCTCGCCAGTACCACTGCCGGTGAGGGTCTGGAG GTCTGCCGCCGCGCCTGTGGTGGTCACGGATACAGCAGCTACAGCGGCATTGGACCGGCTTACGCAGATTATCTG CCCACACTGACTTGGGAAGGTGATAACTATATGTTGACCCAGCAGGTTGCACAATATCTTCTCAAATCTGCCCGT GCCGTCCTGGCCGGTAAGCCGGCTGATAACGACACTAGCCGCATTCTTCAGACATACCTCGACCGTCGCGACAAG GGAGCTTCATTCGATGTGCTCGATGAAGACAAGGACATTGTGGCTGCCTTTGCCTGGCGCACAGCTCATCTGACC TTCGAGGCCCTCAAGCATCGGGATGCTGAGAAGCGCTCCTGGAACAGCCTTTTGGTTGACTTCTGGCGCTTGTCT ACGTCTCATTCTCAGTACCTGGTGGTGAAGAACTTCTACGAGGCGGTTTCCTCCCCTGAACTCTCAGCGGCCTTG GATCCAGAGACCAAGGGCCTCCTGCATCAATTATTCAGACTCTTCTCGCTGCACACTCTAGAGCGTGAAGCCGCC GAGTTCTTCTCTTCCGGTGCGGTTACTGTGCGACAAATTACCTTGACTCGTACTACTGCCGTATTAAAGCTACTC GACGCGATCCGCCCGCACGCTGTCCGATTGGTCGATGCTTGGGCGATTCCCGACTGGCACCTGGACAGCAGCCTG GGTCGCTATGACGGCAAGGTGTACGAGGATCTGTTCCGCCGCGCAAGCGAGGAGAACCCTGTTAACGACTTGGTG TTTGACCCTTACCCATGGAACTCGGCATTGCTCAAGAATGAGCCAGCCAAGAGCAAGCTGTAA
Gene	>Pro_DTO377G3_2\|g1707.t1 ATGCCGTCACCTCCTCCTGATTGGGTTAAAGCCCTGAAGCCGGCAGGTCCGCAAGGATCTGAGCTCCTCCAGCAA GAGCGTGCTCAATCGAATGTCAACGTCGAAAGATTATCCGAGTTGCTACACACAAAGGAAACTTTGGAGCGACGA GCGTCCATCCTAGCTCTTTTGAAGCCCGAGAAAGTATTTGATAAGTCTCAGAACCATACTTTGGGCCGCGTAGAG CGGCTCCAGCGATCGCTGGGCAAGGCCAAGCGCCTCCAGCAGCTTGCCGAAGAGCACAAATGGTCGATGGAAGAG CTCCATGCGGCTAATGACTTGATTGGTGAACCTACCCCTTACGGTTTGCACGCTAGTATGTTCCTAGTAAGTGAA TTAGACCCTTGTCAATAATCCAACTCTCCAACTAAACTAACCACTTTGGTCGTTATCTAGGTGACTCTTCGCGAG CAAGGAACTCCTGAGCAGCGCAAGCTGTTCCTTGAACGCGCAGAAAAATACGAGATTATCGGTTGCTACGCGCAA ACAGAGCTGGGCCATGGATCGAACGTGCGCGGTTTGGAAACCACCGCCACCTGGAACTCCGACGATAAGACATTC ACCATCAACTCTCCAACATTGACTTCTTCGAAGTGGTGGATTGGATCTCTCGGTCGCACGGCCAATCACGCTGTG GTTATGGCCCAGCTTTTTATTGATGGCAAGAACTATGGTCCTCACCCATTCATCGTGCAGGTCCGTGACCTCGAA ACCCATCAACCATTGGATAATGTATATGTGGGCGATATTGGCCCCAAATTTGGCTACAAGTAAGTCGGCTCTCAT TTTTTGGCCGGTATCAGCACTAATGACTACTTAGCACTATGGATAATGGTTTCCTGCTGTTCAACAACGTCAAGA TACCCCATGTGAACATGCTGGCCCGCTTCTGTCAGGTCGACAAAGAGACGAACCGCTATACTAAGCCTGCTGTGC CATCTCTTGTCTTTGGTACTATGACCTGGGTGCGCGCCAACATTGTTCTAGATGCCGGTGGTGTTCTGGCTCGCG GTGTGACTATCGCGACCCGTTACTGTGCGGTTCGGAGGCAGTTCCAGGATCGCGATTCGGACCCGAACGCGGGTG AGACCCAAGTACTGAACTATAAGATGGTCCAGGTGCGCTTGCTTCCACTTTTGGCATCTATGTATGCTCTTCATT TCACTGGTCGCGGTATGATGCGTCTGTATGAGGAGAATCAAAGCCGCATGAAGGCAGCCAGTTCGCCCGACCAGG AGTCGCGGGGCGCTGGACCCGAGCAACTCCGTGCCGGTGCGAACCTCCTGGCGGATCTGCACGCCACCTCATGTG GTCTTAAGGCTCTCGCCAGTACCACTGCCGGTGAGGGTCTGGAGGTCTGCCGCCGCGCCTGTGGTGGTCACGGAT ACAGCAGCTACAGCGGCATTGGACCGGCTTACGCAGATTATCTGCCCACACTGACTTGGGAAGGTGATAACTATA TGTTGACCCAGCAGGTTGCACAATATGTATGTCGCAGTTCTTTCTTCCATTCTATTTACTCCTAACTGACCGTAT TAATAGCTTCTCAAATCTGCCCGTGCCGTCCTGGCCGGTAAGCCGGCTGATAACGACACTAGCCGCATTCTTCAG ACATACCTCGACCGTCGCGACAAGGGAGCTTCATTCGATGTGCTCGATGAAGACAAGGACATTGTGGCTGCCTTT GCCTGGCGCACAGCTCATCTGACCTTCGAGGCCCTCAAGCATCGGGATGCTGAGAAGCGCTCCTGGAACAGCCTT TTGGTTGACTTCTGGCGCTTGTCTACGTCTCATTCTCAGTACCTGGTGGTGAAGAACTTCTACGAGGCGGTTTCC TCCCCTGAACTCTCAGCGGCCTTGGATCCAGAGACCAAGGGCCTCCTGCATCAATTATTCAGACTCTTCTCGCTG CACACTCTAGAGCGTGAAGCCGCCGAGTTCTTCTCTTCCGGTGCGGTTACTGTGCGACAAATTACCTTGACTCGT ACTACTGCCGTATTAAAGCTACTCGACGCGATCCGCCCGCACGCTGTCCGATTGGTCGATGCTTGGGCGATTCCC GACTGGCACCTGGACAGCAGCCTGGGTCGCTATGACGGCAAGGTGTACGAGGATCTGTTCCGCCGCGCAAGCGAG GAGAACCCTGTTAACGACTTGGTGTTTGACCCTTACCCATGGAACTCGGCATTGCTCAAGAATGAGCCAGCCAAG AGCAAGCTGTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences