© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1690.t1 |
| Gene name | |
| Location | scaffold_02:600599..601487 |
| Strand | - |
| Gene length (bp) | 888 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12352 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus | 1.5E-13 | 154 | 215 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 221 | 240 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 41.42 | 19.83 | 63.00 |
| 5d_25C | Five days - 25 degrees Celsius | 35.00 | 15.87 | 54.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 35.36 | 16.34 | 54.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 36.04 | 16.68 | 55.40 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.42 | 17.87 | 60.97 |
| 7d_30C | Seven days - 30 degrees Celsius | 39.09 | 17.76 | 60.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.654545 | no |
| 3d_25C | 7d_25C | 0.674448 | no |
| 3d_25C | 7d_15C | 0.913564 | no |
| 3d_25C | 7d_30C | 0.897239 | no |
| 3d_25C | 10d_25C | 0.720550 | no |
| 5d_25C | 7d_25C | 0.983657 | no |
| 5d_25C | 7d_15C | 0.766305 | no |
| 5d_25C | 7d_30C | 0.786317 | no |
| 5d_25C | 10d_25C | 0.951773 | no |
| 7d_25C | 7d_15C | 0.789602 | no |
| 7d_25C | 7d_30C | 0.810634 | no |
| 7d_25C | 10d_25C | 0.967859 | no |
| 7d_15C | 7d_30C | 0.986073 | no |
| 7d_15C | 10d_25C | 0.830245 | no |
| 7d_30C | 10d_25C | 0.851490 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1690.t1 MNSLFNSALKQSSSIRRDLDTFSQSPTTSSPALQGQLAASLASLSRTVDDYSALSKKELIPEKQQKAFDRVKNFR SELADYRVQFDRLRKEREDAQSVTNHNELLGRRPHHAATPENPYAQSSLPQSTSAFAPSSSGLGFGAGPADYDRE THALREQSFFSNTHNQLDDFLDRGRAVLADLGQQREVLKGTQRRLYSVANTLGVSGDTIRMVERRARQDKWIFWG GVVIFFLFCWAVLHFLR* |
| Coding | >Pro_DTO377G3_2|g1690.t1 ATGAACTCGCTATTCAACTCTGCTTTAAAGCAATCATCGTCGATCCGCCGTGATCTGGATACATTTTCACAGTCG CCAACCACCTCCTCACCCGCGCTACAAGGCCAGCTTGCTGCTTCCTTGGCATCGCTTTCCCGCACCGTCGATGAC TACTCCGCACTCTCCAAGAAGGAACTAATTCCGGAGAAACAACAAAAGGCGTTCGACCGCGTCAAGAACTTCCGA AGTGAGCTCGCGGACTATCGGGTACAATTCGATCGACTCCGCAAAGAACGCGAAGATGCACAATCGGTCACCAAC CACAATGAACTTCTAGGCCGTCGTCCACACCACGCCGCAACACCAGAGAACCCTTATGCGCAATCTTCACTCCCG CAGAGCACCTCAGCCTTCGCACCCTCATCATCCGGTCTCGGCTTTGGCGCTGGCCCCGCCGACTACGACCGCGAA ACCCACGCGCTACGCGAGCAGTCCTTCTTCTCCAACACACACAATCAACTCGATGATTTCCTAGACCGCGGAAGA GCGGTCCTCGCTGATCTAGGACAGCAGCGCGAAGTACTCAAGGGAACTCAGCGGCGACTATACAGCGTTGCGAAC ACGCTTGGTGTTAGCGGCGATACGATCCGGATGGTGGAGCGGCGGGCGCGCCAGGATAAGTGGATTTTCTGGGGT GGTGTGGTAATTTTCTTTTTGTTCTGCTGGGCAGTGCTACACTTCTTGCGGTAG |
| Transcript | >Pro_DTO377G3_2|g1690.t1 ATGAACTCGCTATTCAACTCTGCTTTAAAGCAATCATCGTCGATCCGCCGTGATCTGGATACATTTTCACAGTCG CCAACCACCTCCTCACCCGCGCTACAAGGCCAGCTTGCTGCTTCCTTGGCATCGCTTTCCCGCACCGTCGATGAC TACTCCGCACTCTCCAAGAAGGAACTAATTCCGGAGAAACAACAAAAGGCGTTCGACCGCGTCAAGAACTTCCGA AGTGAGCTCGCGGACTATCGGGTACAATTCGATCGACTCCGCAAAGAACGCGAAGATGCACAATCGGTCACCAAC CACAATGAACTTCTAGGCCGTCGTCCACACCACGCCGCAACACCAGAGAACCCTTATGCGCAATCTTCACTCCCG CAGAGCACCTCAGCCTTCGCACCCTCATCATCCGGTCTCGGCTTTGGCGCTGGCCCCGCCGACTACGACCGCGAA ACCCACGCGCTACGCGAGCAGTCCTTCTTCTCCAACACACACAATCAACTCGATGATTTCCTAGACCGCGGAAGA GCGGTCCTCGCTGATCTAGGACAGCAGCGCGAAGTACTCAAGGGAACTCAGCGGCGACTATACAGCGTTGCGAAC ACGCTTGGTGTTAGCGGCGATACGATCCGGATGGTGGAGCGGCGGGCGCGCCAGGATAAGTGGATTTTCTGGGGT GGTGTGGTAATTTTCTTTTTGTTCTGCTGGGCAGTGCTACACTTCTTGCGGTAG |
| Gene | >Pro_DTO377G3_2|g1690.t1 ATGGTATGTATATTGCAGTTCCTCGCGATAGGTTTACACAGCTAACATGAACAGAACTCGCTATTCAACTCTGCT TTAAAGCAATCATCGTCGATCCGCCGTGATCTGGATACATTTTCACAGTCGCCAACCACCTCCTCACCCGCGCTA CAAGGTGCGCTCCTACCACCGACTCTTCGCAACCTAAGATATTGACTTCTAGCTTCTAGGCCAGCTTGCTGCTTC CTTGGCATCGCTTTCCCGCACCGTCGATGACTACTCCGCACTCTCCAAGAAGGAACTAATTCCGGAGAAACAACA AAAGGCGTTCGACCGCGTCAAGAACTTCCGAAGTGAGCTCGCGGACTATCGGGTACAATTCGATCGACTCCGCAA AGAACGCGAAGATGCAGTATGTATACATCAATCCTGTCATGAGATACTCCAATACTGACCTCATACCAGCAATCG GTCACCAACCACAATGAACTTCTAGGCCGTCGTCCACACCACGCCGCAACACCAGAGAACCCTTATGCGCAATCT TCACTCCCGCAGAGCACCTCAGCCTTCGCACCCTCATCATCCGGTCTCGGCTTTGGCGCTGGCCCCGCCGACTAC GACCGCGAAACCCACGCGCTACGCGAGCAGTCCTTCTTCTCCAACACACACAATCAACTCGATGATTTCCTAGAC CGCGGAAGAGCGGTCCTCGCTGATCTAGGACAGCAGCGCGAAGTACTCAAGGGAACTCAGCGGCGACTATACAGC GTTGCGAACACGCTTGGTGTTAGCGGCGATACGATCCGGATGGTGGAGCGGCGGGCGCGCCAGGATAAGTGGATT TTCTGGGGTGGTGTGGTAATTTTCTTTTTGTTCTGCTGGGCAGTGCTACACTTCTTGCGGTAG |