Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1676.t1
Gene name
Locationscaffold_02:569545..569896
Strand+
Gene length (bp)351
Transcript length (bp)351
Coding sequence length (bp)351
Protein length (aa) 117

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 165.00 80.27 249.72
5d_25C Five days - 25 degrees Celsius 287.55 154.36 420.74
7d_25C Seven days - 25 degrees Celsius 356.90 185.08 528.73
10d_25C Ten days - 25 degrees Celsius 184.10 85.86 282.34
7d_15C Seven days - 15 degrees Celsius 1001.99 374.78 1629.19
7d_30C Seven days - 30 degrees Celsius 546.04 311.84 780.24

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.027043 yes
3d_25C 7d_25C 0.001804 yes
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.779812 no
5d_25C 7d_25C 0.482767 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.005626 yes
5d_25C 10d_25C 0.112436 no
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.094678 no
7d_25C 10d_25C 0.012609 yes
7d_15C 7d_30C 0.044784 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1676.t1
MHFTTLLSLASLGLNILPVQSAAVPAADLARRAGQPISRVYLPNTVEKRHTYGVDEDEALEKRHTYGVDEDEALE
KRHTYGVDEDEALEKRHTYGVDEDEALEKRHTYGVDEDEVV*
Coding >Pro_DTO377G3_2|g1676.t1
ATGCATTTCACCACCCTGCTCAGCCTCGCCAGCCTCGGCCTGAATATCCTCCCTGTGCAGTCCGCAGCAGTTCCC
GCCGCTGATTTGGCTCGCCGCGCCGGGCAGCCAATCAGCCGTGTCTACCTTCCTAACACGGTCGAGAAGAGGCAC
ACCTACGGAGTGGATGAAGACGAGGCGCTCGAGAAGAGGCACACCTACGGGGTGGATGAAGATGAGGCACTCGAA
AAGAGGCACACCTACGGAGTGGATGAAGACGAGGCGCTCGAGAAGCGACACACCTACGGGGTGGATGAAGATGAG
GCACTCGAAAAGAGGCACACCTACGGAGTGGATGAAGACGAGGTCGTCTGA
Transcript >Pro_DTO377G3_2|g1676.t1
ATGCATTTCACCACCCTGCTCAGCCTCGCCAGCCTCGGCCTGAATATCCTCCCTGTGCAGTCCGCAGCAGTTCCC
GCCGCTGATTTGGCTCGCCGCGCCGGGCAGCCAATCAGCCGTGTCTACCTTCCTAACACGGTCGAGAAGAGGCAC
ACCTACGGAGTGGATGAAGACGAGGCGCTCGAGAAGAGGCACACCTACGGGGTGGATGAAGATGAGGCACTCGAA
AAGAGGCACACCTACGGAGTGGATGAAGACGAGGCGCTCGAGAAGCGACACACCTACGGGGTGGATGAAGATGAG
GCACTCGAAAAGAGGCACACCTACGGAGTGGATGAAGACGAGGTCGTCTGA
Gene >Pro_DTO377G3_2|g1676.t1
ATGCATTTCACCACCCTGCTCAGCCTCGCCAGCCTCGGCCTGAATATCCTCCCTGTGCAGTCCGCAGCAGTTCCC
GCCGCTGATTTGGCTCGCCGCGCCGGGCAGCCAATCAGCCGTGTCTACCTTCCTAACACGGTCGAGAAGAGGCAC
ACCTACGGAGTGGATGAAGACGAGGCGCTCGAGAAGAGGCACACCTACGGGGTGGATGAAGATGAGGCACTCGAA
AAGAGGCACACCTACGGAGTGGATGAAGACGAGGCGCTCGAGAAGCGACACACCTACGGGGTGGATGAAGATGAG
GCACTCGAAAAGAGGCACACCTACGGAGTGGATGAAGACGAGGTCGTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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